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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G28200.1 | AT | JGI | N/A | IEA | |
| GO:0000462 | GO-bp | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | EnsemblGenomes | N/A | IEA |
| GO:0006396 | GO-bp | RNA processing | EnsemblGenomes | N/A | IEA |
| GO:0032040 | GO-cc | small-subunit processome | EnsemblGenomes | N/A | IEA |
| GO:0034388 | GO-cc | Pwp2p-containing subcomplex of 90S preribosome | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
| GO:0030515 | GO-mf | snoRNA binding | EnsemblGenomes | N/A | IEA |
| KOG2396 | KOG | HAT (Half-A-TPR) repeat-containing protein | JGI | N/A | IEA |
| PTHR23271 | Panther | HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 66 | JGI | N/A | IEA |
| PTHR23271:SF1 | Panther | U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 HOMOLOG | JGI | N/A | IEA |
| PF08640 | PFAM | U3 small nucleolar RNA-associated protein 6 | JGI | N/A | IEA |
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Glyma.17g012200 not represented in the dataset |
Glyma.17g012200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.07g261900 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma17g01570 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g012200.1 sequence-type=CDS polypeptide=Glyma.17g012200.1.p locus=Glyma.17g012200 ID=Glyma.17g012200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGGACGTGGTGCAGTACCGGTTGGAGCGCATGGTGGATGAGCTCGACGACCTCGAGCAGCGTGGTCTCTTCAGCCGGCGCGAGATTGCGGAGATCGTAAAGCAGCGCCGAAAGTTCGAGTACCGGCTGAAGCGTCCGAGTCCTCTGAAGCAAGACTTCTTGGCCTACGTGGAGTACGAGACTCAGCTCGACGCCCTCCGCAGGCTTCGCAAGAAGTCCGTGGCGCGCGAATTGATGAAGCAAGGCAACAAGAAGCTCAAGAAGTCCAAGTCCGATTTCGCTGGATTGCTCAGGATTATGGACATTTACGAGCTAGCTTTGAAGCGCTACAAAGGCGATATCGATCTCTGGTTTTGCTACCTCGAGTTTTGCAGGCTCAGAAAGAATGGCAGGATGAAGAAGGCCTTGGCGAATGTTATTAGGTTTCATCCAAAGGTTCCGGGAGTTTGGATTTATGCTGCGGCTTGGGAATTTGATCATAACTTGAATGTTGCGGCTGCTCGTGCTTTGATGCAGGAAGGTCTCAGAGTTTGTCCAACTTCCGAAGACCTTTGGGTCGAGTATCTTCGGATGGAACTTACTTACCTTAATAAGTTGAAGGCACGCAAGGTTGCTTTAGGTGAGGATCAAGGAACTCTCACCCGTGATCCTAGGAGTTCTGATGAAAAACATTGGAGGGATGAAAACAGTGAGTTGTTTATGCCTCTTGGCAAAAGAGGGGATGATGATGGTGGAGCAAATGTTGGAAGTGATGAATCAGAAAAGAAGCAGGAACTGTTTGAAGAACATGGTATGAATATTTTTCAAACTGTCTATAGTGGAGCAGTTGAAGCTGTCCCCTCAAGTCTCAGTCTTAGGAAGCGGTTATTTGAAATATTGGAGGGTACAAACTTGTCACATTATGAAGATATGTGCAAGGAGATATTGAATGACATGAAGAGGGATTTTTCTACACAACCGGAATTTTGGGACTGGCTCGCAAGGCATGAATGTGATCTGGAGATAAGTGAGGAGGGCATAATTCCTCAGGTGGAAAAGGCAGTTCAGGTTTATGAGGAGGCTTTGAAAAATGTGCCATCAGGAACTATGTTTAGTTTGTATGCAAATTTTCTAACAGATATTATAGCTCCTAAGGAAGGAGAAACTGATATAAATGGGTCATCAGGTTGTGCTGTAAACTATATATCACATCTCCTGTCAATATACGAAAGGGCTGAAAGCATGGGGTGCATTACTGAAGATCTTGCATGCAAGCATGTGTCCTTACATTTGCAATTGAGACAGCTGGATGAGGCCCAAAAACTGGCAGCAAAGCTTTGCAGTGGAAAGCTTGCAGAATCGGTAGAGTTATGGGGATTAAGGATTACCATAGAAATTAGATGCATCACAGGAAGTTCTTCTTCACCAAGTGATGCTGATTTGCAATCCCTTTTTGAGCTCCTTCAACAAATTTTGATGAAAGTGTCTGTTTCAAGATCAGAGAACTTGTGGCTAAAGGCTCTTAAATTCTATGCAAATCAAAGACGATATTTTGATAAATTGGTGGAGATTTCTGTTGTTACCTTGGTCAGAGATGGTGGTAGTGAAAATGGATTTTCCCTTTCTTCTGCTATTGTAAGTTTTATACTTCAAAAGGATGGAATTCAGAAGACCAGAGATATCTATAAACGATTTCTAGCTTTACCGCTTCCTGGTCTTGCTTTATATAGACGTTGCATTGACCTGGAAACAAACCTTGCATCAATAGGAGATAAAGATGGTCTTATAAATGCCAGGAAATTATATGAATCTTCACTTGCAACATATGACCAAAATGTCAGCTTGTGGCAAGATTACTATCGCCTAGAGATCAAGATGGGAACATCAGAAAAGGCTACTGCTATCTATTGGCGTGCAAGGAAAGTACTCAAAGATGCTAGTGAATTTGTCACTGCCCCAGATATGTGA
>Glyma.17g012200.1.p sequence-type=predicted peptide transcript=Glyma.17g012200.1 locus=Glyma.17g012200 ID=Glyma.17g012200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MADVVQYRLERMVDELDDLEQRGLFSRREIAEIVKQRRKFEYRLKRPSPLKQDFLAYVEYETQLDALRRLRKKSVARELMKQGNKKLKKSKSDFAGLLRIMDIYELALKRYKGDIDLWFCYLEFCRLRKNGRMKKALANVIRFHPKVPGVWIYAAAWEFDHNLNVAAARALMQEGLRVCPTSEDLWVEYLRMELTYLNKLKARKVALGEDQGTLTRDPRSSDEKHWRDENSELFMPLGKRGDDDGGANVGSDESEKKQELFEEHGMNIFQTVYSGAVEAVPSSLSLRKRLFEILEGTNLSHYEDMCKEILNDMKRDFSTQPEFWDWLARHECDLEISEEGIIPQVEKAVQVYEEALKNVPSGTMFSLYANFLTDIIAPKEGETDINGSSGCAVNYISHLLSIYERAESMGCITEDLACKHVSLHLQLRQLDEAQKLAAKLCSGKLAESVELWGLRITIEIRCITGSSSSPSDADLQSLFELLQQILMKVSVSRSENLWLKALKFYANQRRYFDKLVEISVVTLVRDGGSENGFSLSSAIVSFILQKDGIQKTRDIYKRFLALPLPGLALYRRCIDLETNLASIGDKDGLINARKLYESSLATYDQNVSLWQDYYRLEIKMGTSEKATAIYWRARKVLKDASEFVTAPDM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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