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Report for Sequence Feature Glyma.17g010200

Feature Type:gene_model
Chromosome:Gm17
Start:827936
stop:833331
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g010200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G62360.1AT KNOX/ELK homeobox transcription factor JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003700GO-mf sequence-specific DNA binding transcription factor activity JGI N/AIEA
GO:0043565GO-mf sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0043565GO-mf sequence-specific DNA binding JGI N/AIEA
KOG0773 KOG Transcription factor MEIS1 and related HOX domain proteins JGI N/AIEA
PTHR11850Panther HOMEOBOX PROTEIN TRANSCRIPTION FACTORS JGI N/AIEA
PTHR11850:SF48Panther JGI N/AIEA
PF00046PFAM Homeobox domain JGI N/AIEA
PF03789PFAM ELK domain JGI N/AIEA
PF03790PFAM KNOX1 domain JGI N/AIEA
PF03791PFAM KNOX2 domain JGI N/AIEA

Expression Patterns of Glyma.17g010200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g010200
ParalogEvidenceComments
Glyma.07g263600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g010200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g01370 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g010200
>Glyma.17g010200.1 sequence-type=CDS polypeptide=Glyma.17g010200.1.p locus=Glyma.17g010200 ID=Glyma.17g010200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGATCCCCAACAACAACTATGGAGGCTCCTCTTCTTCCGCTATCAAGGCCAAGATCATGGCCCATCCTCACTATCACCGTCTCCTGGCAGCCTACGTCAATTGCCAAAAGGTTGGGGCTCCGCCTGAAGTGATGGGAAGGTTAGAAGAAGCATGTGCATCTGCTGCAGTGACAATGGCAGGTGGAACAGCTAGCATAGGCGAGGATCCAGAGCTGGATCAGTTCATGGAGGCTTACTGTGAGATGCTGATCAAGTACGAGCAAGAGCTCTCCAAACCCTTCAAGGAAGCCATGCTCTTTCTTCAAAGGATAGAGTGCCAGTTCAAATCTCTCACTATTTCTTCTTCGTTGGACACTACTGCTTGTAATGAAGCTATTGATAGGAATGGATCATCTGATGATGTTGATGTTCAGACCAACATAATAGATCCACAGGCAGAGGACCAAGAATTGAAAGGTCAACTCTTACGCAAGTACCGTGGATACCTAGGCAGTTTGAAGCAGGAATTCACCAAGAAGAGGAAAAAGGGCAAGCTGCCCAAAGAAGCAAGACAACAATTACTTGAATGGTGGAGCAGACACTACAAATGGCCTTACCCATCTGAATCTCAGAAGCTAGCTCTTGCAGAGTCAACAGGGCTGGATCAGAAGCAAATTAACAACTGGTTTATCAATCAAAGAAAGCGGCACTGGAAGCCTTCAGAGGACATGCAATTTGTGGTGGTTGATCCAAGCCATCCACACTACTACATGGAAAATGTTCTGGGCAATCCCTTTCCCATGAATCTCTCCCACACAATGCTCTAA
Predicted protein sequences of Glyma.17g010200
>Glyma.17g010200.1.p sequence-type=predicted peptide transcript=Glyma.17g010200.1 locus=Glyma.17g010200 ID=Glyma.17g010200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEIPNNNYGGSSSSAIKAKIMAHPHYHRLLAAYVNCQKVGAPPEVMGRLEEACASAAVTMAGGTASIGEDPELDQFMEAYCEMLIKYEQELSKPFKEAMLFLQRIECQFKSLTISSSLDTTACNEAIDRNGSSDDVDVQTNIIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMENVLGNPFPMNLSHTML*






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