Glyma.17g005300

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Report for Sequence Feature Glyma.17g005300

Feature Type:	gene_model
Chromosome:	Gm17
Start:	492754
stop:	497665
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.17g005300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G47720.2	AT	Thiolase family protein	JGI	N/A	IEA
GO:0006635	GO-bp	fatty acid beta-oxidation	EnsemblGenomes	N/A	IEA
GO:0008152	GO-bp	metabolic process	EnsemblGenomes	N/A	IEA
GO:0008152	GO-bp	metabolic process	JGI	N/A	IEA
GO:0005829	GO-cc	cytosol	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
GO:0003985	GO-mf	acetyl-CoA C-acetyltransferase activity	EnsemblGenomes	N/A	IEA
GO:0016740	GO-mf	transferase activity	EnsemblGenomes	N/A	IEA
GO:0016746	GO-mf	transferase activity, transferring acyl groups	EnsemblGenomes	N/A	IEA
GO:0016747	GO-mf	transferase activity, transferring acyl groups other than amino-acyl groups	EnsemblGenomes	N/A	IEA
GO:0016747	GO-mf	transferase activity, transferring acyl groups other than amino-acyl groups	JGI	N/A	IEA
KOG1390	KOG	Acetyl-CoA acetyltransferase	JGI	N/A	IEA
PTHR18919	Panther	ACETYL-COA C-ACYLTRANSFERASE	JGI	N/A	IEA
PTHR18919:SF7	Panther		JGI	N/A	IEA
PF00108	PFAM	Thiolase, N-terminal domain	JGI	N/A	IEA
PF02803	PFAM	Thiolase, C-terminal domain	JGI	N/A	IEA
LYSINE-DEG2-PWY	SoyCyc9	lysine degradation II	Plant Metabolic Network		ISS
PWY-5910	SoyCyc9	superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate)	Plant Metabolic Network		ISS
PWY-922	SoyCyc9	mevalonate pathway I	Plant Metabolic Network		ISS
GN7V-40728	SoyCyc9-rxn	acetyl-CoA C-acetyltransferase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.17g005300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g005300 not represented in the dataset	Glyma.17g005300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.17g005300

Paralog	Evidence	Comments
Glyma.07g268500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g005300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma17g00910	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.17g005300

Limit To All Plant Sequences

>Glyma.17g005300.2 sequence-type=transcript locus=Glyma.17g005300 ID=Glyma.17g005300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCATTGCATCGCATGCAAAAGACAGGACTAGACAAGGTGAAGATGGGCAAGTGGGTCCCTCCCTTAACACCACACCATACCATGTTTAGTTTTCCAACCAAAAACGTTGTCTTTGATTTCTTTTCTCTTTAGCTGCTTCTTTTGTCTCTCCAAACTAACATCCAGATTGCTCTGTTACTATCAAAAGGCCTTCTTTCCTCATTTCGGACGCACGCTCCCCATCCATGTCTACTTGTGTAAAATCCCGAGATGTTTGTATTGTTGGTGTTGCACGGACGCCAATAGGTGGTTTACTTGGCACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGACTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTTTTGGGAATGTTCTTAGTGCCAATTTAGGGCAGGCTCCTGCCAGACAGGCTGCATTAGGTGCAGGAATTCCTACATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAGCTACCATGCTTGCAGCACTCACCATACAATTCGGTCTCAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCAAATGCACCTAAGTACATTGCGGAGGCCAGGAAAGGGTCTCGGTATGGACATGATACCATCATTGATGGTATGGTCAAAGATGGCCTTTGGGATGTCTATAATAACTTCGGCATGGGAGTATGTGCCGAACTATGTGCAGATCAGCATGTCATAACAAGAGATGAGCAGGACTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCCCAAAATGCTGGTCATTTTGCTTGGGAGATAGTTCCGGTTGAAGTTTCCACTGGAAGAGGGAGGGCTTCCAAAATTGTTGATAAAGATGAAGGCCTGGGGAAGTTTGATGCTGCAAAGTTAAGGAAGCTTAGACCAAGCTTTAAAGAGGTCGGGGGTTCTGTGACTGCTGGCAATGCTTCTAGCATAAGTGATGGTGCTGCTGCATTAGTGCTAGTGAGCGAAGAGAAGGCACGTGAGCTTGGATTGCATGTAATTGCAAAGATAAAAGGATATGGGGATGCAGCTAAGGCGCCTGAATTATTTACAACTGCTCCTTCCCTTGCAATACCAAAAGCTATATCAAATGCTGGTCTTGATGCTTCTCAAATAGATTATTATGAAATAAATGAAGCTTTTTCGGTTGTAGCTCTTGCAAATCAGAAGCTTCTTGGTCTTGATCCTGAAAAAGTTAACGCGCACGGGGGAGCTGTGTCATTGGGGCATCCCTTGGGTTGCAGTGGAGCTCGCATCTTAGTTACATTATTAGGGGTATTGAGGCAGAAGAGAGGGAAGTATGGTGTTGCCGCCATCTGCAATGGGGGAGGAGGAGCATCTGCTCTTGTTCTTGAGCTCATGTAAGCCTTTTTAATTTGGTCAGCCATTGTTCAGTTCTAATAGTTTACAGTGTAGTTAATCCTGCTTGAACAATATGAGATCAGGTCCTTATTCTGGGGATGTCTACTTATTTCATTGTAGCTTAGAAAGTTCTCATTAATTAATTAATTAATTGTTGTTGCCACGGAATTAGTTTGGGGGATGTCGAAGATTAATGCTCAATAAATGTAGTTAGACATCATGTCTCCCAATAGTTGAAAATCATTGTCCCCTGTAGGCTATTGCTTGTTATTTTGAAGAATAATAGTCATAATGTAAATCAGTAAATATGAACAGTACGATATGACTGTATTATCTTTATTCTTTTAACAATAACATTTAACAGTAGTTGGCTCATGAAGTATGCTTTGTTTACATTAATTTATATTTGTGGATATCTTTACATTCTTTGTTTACAGACTTTTGTATATAAACTGTCAATTAGATACCTAAAATCGAACTCATTTGGCAGGTTGGAAACCTGAATCTTTTATAATTTTAGAAAATAAATGTGTTTTTTCTTTCTTTCTTTTTCCTGCTACATCCTGTTTTTCCAACCCCCAAATTATTGAGGTTTTTGCATTTTGCAGGCCGGTTGCTGTGGGACGTTCTTTATTATGACAAAGATCTCCTTACATCATACTACTTTGCAACACTTATACTTTTTATTTAAAATAACAAAACATGTAATAAGTTTAGTCATCAACAAAGTTTGAATGGTACTGGATTCGGTCTCTTTAAGCAAAGTCTCGGTAAGTCTTGTGGATAAAAAAAAAATGTGATTTGGAGAAAATATCAATCAAGTTTTTCGATGGAGATTAGTTATCAACAAAATTGATAGATGTTCCACACTAATACCATGGTGACAAAAAAAATTGTAATCTGTTCGGTCAAAGGAAAAAAATGATCTTTAGTAAAGCTCCACCTGCTATGATTGTTTGATGTTGTGTCTCTTTAC

Coding sequences of Glyma.17g005300

Limit To All Plant Sequences

>Glyma.17g005300.1 sequence-type=CDS polypeptide=Glyma.17g005300.1.p locus=Glyma.17g005300 ID=Glyma.17g005300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTACTTGTGTAAAATCCCGAGATGTTTGTATTGTTGGTGTTGCACGGACGCCAATAGGTGGTTTACTTGGCACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGACTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTTTTGGGAATGTTCTTAGTGCCAATTTAGGGCAGGCTCCTGCCAGACAGGCTGCATTAGGTGCAGGAATTCCTACATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAGCTACCATGCTTGCAGCACTCACCATACAATTCGGTCTCAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCAAATGCACCTAAGTACATTGCGGAGGCCAGGAAAGGGTCTCGGTATGGACATGATACCATCATTGATGGTATGGTCAAAGATGGCCTTTGGGATGTCTATAATAACTTCGGCATGGGAGTATGTGCCGAACTATGTGCAGATCAGCATGTCATAACAAGAGATGAGCAGGACTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCCCAAAATGCTGGTCATTTTGCTTGGGAGATAGTTCCGGTTGAAGTTTCCACTGGAAGAGGGAGGGCTTCCAAAATTGTTGATAAAGATGAAGGCCTGGGGAAGTTTGATGCTGCAAAGTTAAGGAAGCTTAGACCAAGCTTTAAAGAGGTCGGGGGTTCTGTGACTGCTGGCAATGCTTCTAGCATAAGTGATGGTGCTGCTGCATTAGTGCTAGTGAGCGAAGAGAAGGCACGTGAGCTTGGATTGCATGTAATTGCAAAGATAAAAGGATATGGGGATGCAGCTAAGGCGCCTGAATTATTTACAACTGCTCCTTCCCTTGCAATACCAAAAGCTATATCAAATGCTGGTCTTGATGCTTCTCAAATAGATTATTATGAAATAAATGAAGCTTTTTCGGTTGTAGCTCTTGCAAATCAGAAGCTTCTTGGTCTTGATCCTGAAAAAGTTAACGCGCACGGGGGAGCTGTGTCATTGGGGCATCCCTTGGGTTGCAGTGGAGCTCGCATCTTAGTTACATTATTAGGGGTATTGAGGCAGAAGAGAGGGAAGTATGGTGTTGCCGCCATCTGCAATGGGGGAGGAGGAGCATCTGCTCTTGTTCTTGAGCTCATGCCGGTTGCTGTGGGACGTTCTTTATTATGA

>Glyma.17g005300.2 sequence-type=CDS polypeptide=Glyma.17g005300.2.p locus=Glyma.17g005300 ID=Glyma.17g005300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTACTTGTGTAAAATCCCGAGATGTTTGTATTGTTGGTGTTGCACGGACGCCAATAGGTGGTTTACTTGGCACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGACTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTTTTGGGAATGTTCTTAGTGCCAATTTAGGGCAGGCTCCTGCCAGACAGGCTGCATTAGGTGCAGGAATTCCTACATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAGCTACCATGCTTGCAGCACTCACCATACAATTCGGTCTCAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCAAATGCACCTAAGTACATTGCGGAGGCCAGGAAAGGGTCTCGGTATGGACATGATACCATCATTGATGGTATGGTCAAAGATGGCCTTTGGGATGTCTATAATAACTTCGGCATGGGAGTATGTGCCGAACTATGTGCAGATCAGCATGTCATAACAAGAGATGAGCAGGACTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCCCAAAATGCTGGTCATTTTGCTTGGGAGATAGTTCCGGTTGAAGTTTCCACTGGAAGAGGGAGGGCTTCCAAAATTGTTGATAAAGATGAAGGCCTGGGGAAGTTTGATGCTGCAAAGTTAAGGAAGCTTAGACCAAGCTTTAAAGAGGTCGGGGGTTCTGTGACTGCTGGCAATGCTTCTAGCATAAGTGATGGTGCTGCTGCATTAGTGCTAGTGAGCGAAGAGAAGGCACGTGAGCTTGGATTGCATGTAATTGCAAAGATAAAAGGATATGGGGATGCAGCTAAGGCGCCTGAATTATTTACAACTGCTCCTTCCCTTGCAATACCAAAAGCTATATCAAATGCTGGTCTTGATGCTTCTCAAATAGATTATTATGAAATAAATGAAGCTTTTTCGGTTGTAGCTCTTGCAAATCAGAAGCTTCTTGGTCTTGATCCTGAAAAAGTTAACGCGCACGGGGGAGCTGTGTCATTGGGGCATCCCTTGGGTTGCAGTGGAGCTCGCATCTTAGTTACATTATTAGGGGTATTGAGGCAGAAGAGAGGGAAGTATGGTGTTGCCGCCATCTGCAATGGGGGAGGAGGAGCATCTGCTCTTGTTCTTGAGCTCATGTAA

Predicted protein sequences of Glyma.17g005300

Limit To All Plant Sequences

>Glyma.17g005300.1.p sequence-type=predicted peptide transcript=Glyma.17g005300.1 locus=Glyma.17g005300 ID=Glyma.17g005300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSTCVKSRDVCIVGVARTPIGGLLGTLSSLSATELGSIAIKTALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPTSVICTTINKVCASGMKATMLAALTIQFGLNDVVVAGGMESMSNAPKYIAEARKGSRYGHDTIIDGMVKDGLWDVYNNFGMGVCAELCADQHVITRDEQDSYAIRSFERGISAQNAGHFAWEIVPVEVSTGRGRASKIVDKDEGLGKFDAAKLRKLRPSFKEVGGSVTAGNASSISDGAAALVLVSEEKARELGLHVIAKIKGYGDAAKAPELFTTAPSLAIPKAISNAGLDASQIDYYEINEAFSVVALANQKLLGLDPEKVNAHGGAVSLGHPLGCSGARILVTLLGVLRQKRGKYGVAAICNGGGGASALVLELMPVAVGRSLL*

>Glyma.17g005300.2.p sequence-type=predicted peptide transcript=Glyma.17g005300.2 locus=Glyma.17g005300 ID=Glyma.17g005300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSTCVKSRDVCIVGVARTPIGGLLGTLSSLSATELGSIAIKTALKRANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPTSVICTTINKVCASGMKATMLAALTIQFGLNDVVVAGGMESMSNAPKYIAEARKGSRYGHDTIIDGMVKDGLWDVYNNFGMGVCAELCADQHVITRDEQDSYAIRSFERGISAQNAGHFAWEIVPVEVSTGRGRASKIVDKDEGLGKFDAAKLRKLRPSFKEVGGSVTAGNASSISDGAAALVLVSEEKARELGLHVIAKIKGYGDAAKAPELFTTAPSLAIPKAISNAGLDASQIDYYEINEAFSVVALANQKLLGLDPEKVNAHGGAVSLGHPLGCSGARILVTLLGVLRQKRGKYGVAAICNGGGGASALVLELM*

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