SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.17g002500

Feature Type:gene_model
Chromosome:Gm17
Start:281639
stop:294198
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g002500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G02480.1AT AAA-type ATPase family protein JGI N/AIEA
GO:0006260GO-bp DNA replication EnsemblGenomesN/AIEA
GO:0006261GO-bp DNA-dependent DNA replication EnsemblGenomesN/AIEA
GO:0006281GO-bp DNA repair EnsemblGenomesN/AIEA
GO:0071897GO-bp DNA biosynthetic process EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005663GO-cc DNA replication factor C complex EnsemblGenomesN/AIEA
GO:0009360GO-cc DNA polymerase III complex EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003689GO-mf DNA clamp loader activity EnsemblGenomesN/AIEA
GO:0003887GO-mf DNA-directed DNA polymerase activity EnsemblGenomesN/AIEA
GO:0003887GO-mf DNA-directed DNA polymerase activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
KOG0989 KOG Replication factor C, subunit RFC4 JGI N/AIEA
PTHR11669Panther REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT JGI N/AIEA
PF00004PFAM ATPase family associated with various cellular activities (AAA) JGI N/AIEA
PF12169PFAM DNA polymerase III subunits gamma and tau domain III JGI N/AIEA

Expression Patterns of Glyma.17g002500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g002500
ParalogEvidenceComments
Glyma.07g271700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g002500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g00620 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g002500
>Glyma.17g002500.1 sequence-type=CDS polypeptide=Glyma.17g002500.1.p locus=Glyma.17g002500 ID=Glyma.17g002500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAGAAATGCGGGTATCTGAGCTTCACTTGAAGAAGGAACTCACCCAAATCCGCAAGGCTGCTCGAGTACTCAGAGATCCTGGCACCACTTCTTCTTGGAAGTCACCACTCAGTTCATCAAGATCTGTGGCTGCATGGAACAAAGACACTGCCAGTAGAAGGTTCACTACCCCCAATGACAAAGACAAGGACAAGGACAAGAGGGTGTTCTTGTACAACTGGAAGAACTACAAATCTTCCAGTGAGAAATACAACGATGAGGAAGAAGAAGAAGATGATGATGACGATGGATCTTCTTCGCTTCTCGGGGACAGAGACAGAGATAGTTTGAGTGATGCTCGCAATGGTTGTGACTCAAAGAGTGATACTTACTTGGCTGCTGCCGATGGTGGCGGCGGCGCTCGTTCTTCCATTTTCCGATGTGGGGATGCCAATCTTGTTTCCAGAAGAGCGGTTCCAGTTAAGAAAAAGAGTAAGAAAAATAACCCACATTTTGATTTTTTAGCAAAGTATCAACACCATAGACCAGGGAGAAAAAAATTGAGTTCTTCCAAGGCATTGCTAGAAGGACATCCTTCGCCTTTTTTTAACAGGGATGACTCGGTTGAACACTCTGATGATGATACCGAGGATTACACTAATTCCGAGGGTGTGAGACCAATTTCGGGGACTTCCCCTTTGCTTCTCAAACTCAGGCAAAAGAACTGGTCTCGCTCTTCCTCCAAGTTCTTGAGAAGAAGCCGGAAAGAGGACTCTTCTTATTCTTATAGCACCCCTGCATTGTCAACTAGTTCTTACAATAGGTACGGTCACCGTTATCCCAGCACTCTTGGATCCTGGGATGGAACCACCACCTCGGTCAATGATGGCGACGGCGACGATGAGATTGATGATCATTTGGATTTGCCTGGCCGTCAAGGATGTGGAATTCCTTGCTACTGGTCCAAGAGAACTCCTAAACATAGACGGATGTGTGGGAGTTGTTATTCTCCTTCGCTGTCGGATACTTTGAGGAGAAAAGGGAGTAGCATGCTCTGTGGAAGTCAAAGTATTTATCCAACACACCGTAGATCAGCTTCGGCTTCTCACAAGCGGAGACTCTCTTTGAGGAGTGCTCGAGGTGTTATTCCATTGCTCACTAACAGTGGTGATGTTAGAGAAGGGTCGTCTGTGGGAACCGGTTGGAGTGATGACGAGCTTTCCACAAACTTTGGGGAGCTTGATCTTGAGGGATTGAGCCGGTTGGATGGAAGAAGGTGGTCATCGAGTTGTAGGAGTCAAGAGGGATTGGAGATTGTAGCTCTCAATGGGGAAGGGGAATATGAGAGCACACCAGAAAATAATCGGAGTTTCAGCCAGAAGTATAGGCCCATGTTCTTTGGTGAACTGTTTGGGCAGAATATTGTGGTTCAGTCACTTATCAATGCTGTTTCAAGGGGACGGATTGCTCCCGTCTATCTGTTTCAAGGTCCCCGTGGGACTGGCAAAACATCAACAGCTAGGATATTTGCTGCTGCCTTGAATTGTGCAAGTCCTGATGAGAGCAAACCTTGTGGCTACTGCAGGGAATGTGTTGATTTCATTTCTGGTAAGAGCAGTGATCTATTGGAAGTTGATGGAACTAATAAGAGAGGAATTGATAAGGCTAGATATCTACTAAAACGATTGTCAAGTGGATCATCATCAGCCTCCCCACAATATACAATTTTTGTTATTGATGAGTGTCACCTGTTGCCCTCCAAGACATGGTTGGGATTTCTTAAGTTTCTGGAAGAACCACCCCTGCGAGTAGTATTCATTTTTATAACATCTGATCTTGACAATGTGCCACGAACAATACAATCTAGATGCCAGAAGTACCTTTTTAATAAAATTAAAGATGGGGATATTGTGACCAGGTTGAGGAAAATATCTACTCAGGAGAACCTTGATGTTGAAGCAGATGCACTGGATCTCATTGCTATGAATGCAGATGGTTCACTTCGAGATGCAGAAACAATGTTAGAACAACTTAGTTTGCTGGGGAAGAGAATTACTACTTCTCTTGTCAATGAACTTGTGGGAGTTGTTTCAGATGAAAAATTATTGGAACTTTTGGAGTTAGCAATGTCGTCAGATACTGTAGAGACAGTGAAAAGAGCCAGAGAACTGATGGACTCTGGAGTTGATCCAATGGTTTTGATGTCTCAACTAGCCGGTCTTATCATGGATATCATTGCTGGATCATATGCAGTCATTGACACCAAACCTGATGATTCATTCTTTGGTGGACGGAGTTTGAATGAATCAGAGTTGGAGAGGTTAAAAAATGCTTTGAAGCTTCTCTCGGAGGCAGAGAAACAGTTAAGGACATCCAGTGAACGCTCTACATGGTTCACAGCAACTCTATTGCAGCTTGGTTCTACACCTTCTCCTGATCTTACTCAGTCAAGTAGCAGTAGGAGACAGAGCTGCAAGACAACTGAAGATGATCCATCAAGTGTTTCGAGAGACGTTACCTCTTGCACGCATAAGTCAGACCCTCAATACGTGCCTCAAAAGTCAGCATACACTGCATCCCAGCAAAAAGCCGTAAATGATAATTCCCACCATCAAAAGGATATATCCTCAAAGATTGAAGGTTTCAGCTTGAAATCAAAGCCGTCAAGCAGCCCAGTCATAGATGATGGCTCCACAGTGGTCTCATCTGATGATCTTATGGTTGGGAATACAATGTTTAGGTGCATAGATTCAGGGAAGTTATGTTACATCTGGGTGCATTGTATTGAGAGGTGTCACTCGAAGACATTGAGGCAGCTGCTACACAATCATGGAAAGCTTGTGTCCGTATGTGAAGTAGAAGGTGTTTTGGTAGCATATGTTGCTTTTGAGGATGCAGATATTAAAGTTAGGGTTGAGAGGTTTTTAAGAAGCATTACAAACTCCATGGAAATGGTTCTTAGGCGCAATGTGGAGGTAAGAATAATCCATTTGCCAAATGGCGAAGGTGAAAATCAAGTTAATCTACCGGGCCTAAAGCAGGCAGAGTCAACAGTGGCTGGTGAGAAGGAACAAAGAAAGAGTCATATGAACGGAACGGAGTCTTATTCTAGTTTTCCTCCTTTGCTGGATGGAAACCTTCAATCTACCGCTGCTTCATCAGATATTTTGGCTGAAGGAAATGGTGTGAGGGAGAGGAGACAGGATAATCCAATGCAAAGAATTGAATCCATCATTCGTGAACAGAGGCTGGAAACTGCCTGGTTACAGGCAGTTGAAAAGGGTTCCCCTGGATCATTGAGTCGGTTGAGACCTGAGAAGAATCAAGTACTGCCACAGAATGGTGTGGACCCAATTGAGTCCATGGATTCAACGAGATTTCCCTCTCACCAGCATTGGGAAGATGATCCAAATGATGAAGTCAAAGTTTTAAGCCTTAAAAATGGAAGGATCCCACAGAAGGATCAGATTGGTCGAAAGACAGATCGTTTTCCCATGTCACCAAGTTTATTGCATGACAACAGTTTAGCAACAATTTCTGGAAAAGACAATCTGGGATATGAATCAGGGTCAGGAGCGGGTGGTTGTGGATTTTTATGTTGGAATAAGTCCAAGCCTAGAAGGGTTATAAAGGTCAAAGGTGGCACCCCGGTTAGAGCGGGTAGAGCGGCAACTTTTACATTGTTTGGTGACTGCACTAAGCCAAATAAAAGGGGGCGGGGAAGATAA
Predicted protein sequences of Glyma.17g002500
>Glyma.17g002500.1.p sequence-type=predicted peptide transcript=Glyma.17g002500.1 locus=Glyma.17g002500 ID=Glyma.17g002500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSEMRVSELHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAAWNKDTASRRFTTPNDKDKDKDKRVFLYNWKNYKSSSEKYNDEEEEEDDDDDGSSSLLGDRDRDSLSDARNGCDSKSDTYLAAADGGGGARSSIFRCGDANLVSRRAVPVKKKSKKNNPHFDFLAKYQHHRPGRKKLSSSKALLEGHPSPFFNRDDSVEHSDDDTEDYTNSEGVRPISGTSPLLLKLRQKNWSRSSSKFLRRSRKEDSSYSYSTPALSTSSYNRYGHRYPSTLGSWDGTTTSVNDGDGDDEIDDHLDLPGRQGCGIPCYWSKRTPKHRRMCGSCYSPSLSDTLRRKGSSMLCGSQSIYPTHRRSASASHKRRLSLRSARGVIPLLTNSGDVREGSSVGTGWSDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVALNGEGEYESTPENNRSFSQKYRPMFFGELFGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCASPDESKPCGYCRECVDFISGKSSDLLEVDGTNKRGIDKARYLLKRLSSGSSSASPQYTIFVIDECHLLPSKTWLGFLKFLEEPPLRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKISTQENLDVEADALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTVETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYAVIDTKPDDSFFGGRSLNESELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSTPSPDLTQSSSSRRQSCKTTEDDPSSVSRDVTSCTHKSDPQYVPQKSAYTASQQKAVNDNSHHQKDISSKIEGFSLKSKPSSSPVIDDGSTVVSSDDLMVGNTMFRCIDSGKLCYIWVHCIERCHSKTLRQLLHNHGKLVSVCEVEGVLVAYVAFEDADIKVRVERFLRSITNSMEMVLRRNVEVRIIHLPNGEGENQVNLPGLKQAESTVAGEKEQRKSHMNGTESYSSFPPLLDGNLQSTAASSDILAEGNGVRERRQDNPMQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQNGVDPIESMDSTRFPSHQHWEDDPNDEVKVLSLKNGRIPQKDQIGRKTDRFPMSPSLLHDNSLATISGKDNLGYESGSGAGGCGFLCWNKSKPRRVIKVKGGTPVRAGRAATFTLFGDCTKPNKRGRGR*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo