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Report for Sequence Feature Glyma.17g002400

Feature Type:gene_model
Chromosome:Gm17
Start:274516
stop:279367
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g002400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G02500.1AT Nucleotide-diphospho-sugar transferases superfamily protein JGI N/AIEA
GO:0008299GO-bp isoprenoid biosynthetic process EnsemblGenomesN/AIEA
GO:0008299GO-bp isoprenoid biosynthetic process JGI N/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009570GO-cc chloroplast stroma EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0050518GO-mf 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity EnsemblGenomesN/AIEA
GO:0070567GO-mf cytidylyltransferase activity EnsemblGenomesN/AIEA
PTHR19136Panther FAMILY NOT NAMED JGI N/AIEA
PTHR19136:SF21Panther JGI N/AIEA
PF01128PFAM 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JGI N/AIEA
NONMEVIPP-PWYSoyCyc9 methylerythritol phosphate pathway I Plant Metabolic Network ISS
PWY-5121SoyCyc9 superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) Plant Metabolic Network ISS
PWY-7560SoyCyc9 methylerythritol phosphate pathway II Plant Metabolic Network ISS
GN7V-54067SoyCyc9-rxn 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.17g002400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17g002400 not represented in the dataset
Glyma.17g002400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.17g002400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g00611 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.17g002400
>Glyma.17g002400.2 sequence-type=transcript locus=Glyma.17g002400 ID=Glyma.17g002400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGCAAAGTGAGAGTCAGAGATGGTAGCTATTGGCTTTGGAGCCCctccttctccacttccgtttcatcttcgcctggcttcctctccttctccttTGGCCTTCCCAATAATCCACAAATTCCAAAACGCAGGCAAGTCAGTGATAACAATCTGTTCAAAGAAAAATGCAAAATCAAGGGTGGTCACTCTCTGCTCTGCACCTGTGCAAGAGCAGGAGGTTAGTGATATTACTTTGAGAGAGAGAAGTGTTTCGGTTGTCCTATTGGCTGGAGGGCAGGGCAAGAGGATGGGAGCTAGCATGCCAAAGCAGTATCTTCCTCTTTTTGGTCAACCCATTGCTTTGTATAGTTTCCACACTTTTTTTCACCTGGTTCAAGTCAAAGAAATTATTGTGGTTTGTGATCCTTCATACAAGGACATTTTTGAAGATGCAAAGGGAGATTACCAAGCAGAACTCAAATTTGCACTGCCTGGAAAAGAAAGACAGGATTCTGCTGTTGATCCTAACTCTGAACTTGTTTGCATTCATGATTCTGCAAGACCTTTGGTATTATCAGCAGATGTGAAAAAGGTCCTTAAAGATGGTTTATTGAATGGAGCTGCAGTTCTTGGTGTCCCTGTGAAGGCCACAATCAAAGAGCAACCTTGCTGCAGGCAAACAGGGAGTCGTTTGTTGTTAAAACACTGGACAGAAAAACGCTATGGGAGATGCAGACCCCACAGGTTATCAAGCCTGAGTTGTTGAGGAAAGGCTTTGAGCTTGTAAATAGGGAAGGTCTTGAAGTTACTGATGATGTGTCCATTGTTGAACACCTAAAACATCCTGTTTATATCACTCAAGGATCTTATACCAACATTAAGGTGACTACACCTGATGACATGTTACTGGCAGAGAGAATATTGAATATAAATGATGAAGACAATATAGTCTTGCCAGTTCACCTTTGAAGGGAAATCATATCCTGCAAGATAAGATAGAACTGGAAATCTTCTTTTTCAATAAATAGCGATCAAACAATGAACTTAAAAATCCTTTAGTCTTGTTTATCTTAGATTTATGATTAAGTTAGTGAAGTGTTTTAAGATAAAATATCAAACTTATTGGAATTGATATTTTTTTGGGTATTTAATTGAGCATTTTTACAAGACAACGATGTTCGGGTACGCCCAATGTGGTAGTTAAGTTCTTGAATTTTTGGCAGATAATTAATCATATACACAGTCAAT

>Glyma.17g002400.3 sequence-type=transcript locus=Glyma.17g002400 ID=Glyma.17g002400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGCAAAGTGAGAGTCAGAGATGGTAGCTATTGGCTTTGGAGCCCctccttctccacttccgtttcatcttcgcctggcttcctctccttctccttTGGCCTTCCCAATAATCCACAAATTCCAAAACGCAGGCAAGTCAGTGATAACAATCTGTTCAAAGAAAAATGCAAAATCAAGGGTGGTCACTCTCTGCTCTGCACCTGTGCAAGAGCAGGAGGTTAGTGATATTACTTTGAGAGAGAGAAGTGTTTCGGTTGTCCTATTGGCTGGAGGGCAGGGCAAGAGGATGGGAGCTAGCATGCCAAAGCAGTATCTTCCTCTTTTTGGTCAACCCATTGCTTTGTATAGTTTCCACACTTTTTTTCACCTGGTTCAAGTCAAAGAAATTATTGTGGTTTGTGATCCTTCATACAAGGACATTTTTGAAGATGCAAAGGGAGATTACCAAGCAGAACTCAAATTTGCACTGCCTGGAAAAGAAAGACAGGATTCTGCTGTTGATCCTAACTCTGAACTTGTTTGCATTCATGATTCTGCAAGACCTTTGGTATTATCAGCAGATGTGAAAAAGGTCCTTAAAGATGGTTTATTGAATGGAGCTGCAGTTCTTGGTGTCCCTGTGAAGGCCACAATCAAAGAGGTATTTACTAAATGTTGGCACATGTCAATTCCCTCAACTCAGTTATTTTAAATGGTTGATGAATTTTCTTTTTCTATAAAAGTGAATTTGATATCTCCCACCTACAAAGAATTATGTAGAAAATTTCAAATCCAAATGTGATGAACAACTTTATGCAAGAATCCACATCTATCTGTGTTTGGTTTGGCCGTGAGGACCCAAAAACCAGCGTCCTATCATGATTTTCCACCACACTAGAGAGTAGTAGGTTTAAGTCTACCATTATTTTTTGAACATGATCCACTGTATTTTGAAACACACTACATGTTTTCCTTCGAGTGATAACAAATTACCGTTCATCAGGGTTGCGAATTTAGGTTGTCTTCCTTTCAAGTAAAATGCATTTTTTTGCAGCTATATTCTTTCTTCTTTCCCCTGCTTGTGTTGAATCTCTTTTTCTTTTTGTTATGGCATCTGATCCACAAGCTTAATTTTTAATTTCTTTTGATGTAATTTTAGGTTCACATCTGTGAATAGATGGAGGTCAGTTGTTCGCTTTACATTTATATAACTGCTGCACAACTATGGACAAGTTTTTATCTCAGCTGTGTTTTTGTTTACACTCGATAGAAGTAACAATAACTACAGGAATATTTGTGCACGtatattc

>Glyma.17g002400.4 sequence-type=transcript locus=Glyma.17g002400 ID=Glyma.17g002400.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGTGTGCAGTGGCAAAGTGAGAGTCAGAGATGGTAGCTATTGGCTTTGGAGCCCctccttctccacttccgtttcatcttcgcctggcttcctctccttctccttTGGCCTTCCCAATAATCCACAAATTCCAAAACGCAGGCAAGTCAGTGATAACAATCTGTTCAAAGAAAAATGCAAAATCAAGGGTGGTCACTCTCTGCTCTGCACCTGTGCAAGTTGATATGCAGGAGCAGGAGGTTAGTGATATTACTTTGAGAGAGAGAAGTGTTTCGGTTGTCCTATTGGCTGGAGGGCAGGGCAAGAGGATGGGAGCTAGCATGCCAAAGCAGTATCTTCCTCTTTTTGGTCAACCCATTGCTTTGTATAGTTTCCACACTTTTTTTCACCTGGTTCAAGTCAAAGAAATTATTGTGGTTTGTGATCCTTCATACAAGGACATTTTTGAAGATGCAAAGGGAGATTACCAAGCAGAACTCAAATTTGCACTGCCTGGAAAAGAAAGACAGGATTCTGTTTATAATGGCTTTCAGGAATGTGCAATTTTTTAATCTTAATAATGGTTTATA
Coding sequences of Glyma.17g002400
>Glyma.17g002400.1 sequence-type=CDS polypeptide=Glyma.17g002400.1.p locus=Glyma.17g002400 ID=Glyma.17g002400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTAGCTATTGGCTTTGGAGCCCCTCCTTCTCCACTTCCGTTTCATCTTCGCCTGGCTTCCTCTCCTTCTCCTTTGGCCTTCCCAATAATCCACAAATTCCAAAACGCAGGCAAGTCAGTGATAACAATCTGTTCAAAGAAAAATGCAAAATCAAGGGTGGTCACTCTCTGCTCTGCACCTGTGCAAGAGCAGGAGGTTAGTGATATTACTTTGAGAGAGAGAAGTGTTTCGGTTGTCCTATTGGCTGGAGGGCAGGGCAAGAGGATGGGAGCTAGCATGCCAAAGCAGTATCTTCCTCTTTTTGGTCAACCCATTGCTTTGTATAGTTTCCACACTTTTTTTCACCTGGTTCAAGTCAAAGAAATTATTGTGGTTTGTGATCCTTCATACAAGGACATTTTTGAAGATGCAAAGGGAGATTACCAAGCAGAACTCAAATTTGCACTGCCTGGAAAAGAAAGACAGGATTCTGCTGTTGATCCTAACTCTGAACTTGTTTGCATTCATGATTCTGCAAGACCTTTGGTATTATCAGCAGATGTGAAAAAGGTCCTTAAAGATGGTTTATTGAATGGAGCTGCAGTTCTTGGTGTCCCTGTGAAGGCCACAATCAAAGAGGCAAACAGGGAGTCGTTTGTTGTTAAAACACTGGACAGAAAAACGCTATGGGAGATGCAGACCCCACAGGTTATCAAGCCTGAGTTGTTGAGGAAAGGCTTTGAGCTTGTAAATAGGGAAGGTCTTGAAGTTACTGATGATGTGTCCATTGTTGAACACCTAAAACATCCTGTTTATATCACTCAAGGATCTTATACCAACATTAAGGTGACTACACCTGATGACATGTTACTGGCAGAGAGAATATTGAATATAAATGATGAAGACAATATAGTCTTGCCAGTTCACCTTTGA

>Glyma.17g002400.2 sequence-type=CDS polypeptide=Glyma.17g002400.2.p locus=Glyma.17g002400 ID=Glyma.17g002400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTAGCTATTGGCTTTGGAGCCCCTCCTTCTCCACTTCCGTTTCATCTTCGCCTGGCTTCCTCTCCTTCTCCTTTGGCCTTCCCAATAATCCACAAATTCCAAAACGCAGGCAAGTCAGTGATAACAATCTGTTCAAAGAAAAATGCAAAATCAAGGGTGGTCACTCTCTGCTCTGCACCTGTGCAAGAGCAGGAGGTTAGTGATATTACTTTGAGAGAGAGAAGTGTTTCGGTTGTCCTATTGGCTGGAGGGCAGGGCAAGAGGATGGGAGCTAGCATGCCAAAGCAGTATCTTCCTCTTTTTGGTCAACCCATTGCTTTGTATAGTTTCCACACTTTTTTTCACCTGGTTCAAGTCAAAGAAATTATTGTGGTTTGTGATCCTTCATACAAGGACATTTTTGAAGATGCAAAGGGAGATTACCAAGCAGAACTCAAATTTGCACTGCCTGGAAAAGAAAGACAGGATTCTGCTGTTGATCCTAACTCTGAACTTGTTTGCATTCATGATTCTGCAAGACCTTTGGTATTATCAGCAGATGTGAAAAAGGTCCTTAAAGATGGTTTATTGAATGGAGCTGCAGTTCTTGGTGTCCCTGTGAAGGCCACAATCAAAGAGCAACCTTGCTGCAGGCAAACAGGGAGTCGTTTGTTGTTAAAACACTGGACAGAAAAACGCTATGGGAGATGCAGACCCCACAGGTTATCAAGCCTGAGTTGTTGA

>Glyma.17g002400.3 sequence-type=CDS polypeptide=Glyma.17g002400.3.p locus=Glyma.17g002400 ID=Glyma.17g002400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTAGCTATTGGCTTTGGAGCCCCTCCTTCTCCACTTCCGTTTCATCTTCGCCTGGCTTCCTCTCCTTCTCCTTTGGCCTTCCCAATAATCCACAAATTCCAAAACGCAGGCAAGTCAGTGATAACAATCTGTTCAAAGAAAAATGCAAAATCAAGGGTGGTCACTCTCTGCTCTGCACCTGTGCAAGAGCAGGAGGTTAGTGATATTACTTTGAGAGAGAGAAGTGTTTCGGTTGTCCTATTGGCTGGAGGGCAGGGCAAGAGGATGGGAGCTAGCATGCCAAAGCAGTATCTTCCTCTTTTTGGTCAACCCATTGCTTTGTATAGTTTCCACACTTTTTTTCACCTGGTTCAAGTCAAAGAAATTATTGTGGTTTGTGATCCTTCATACAAGGACATTTTTGAAGATGCAAAGGGAGATTACCAAGCAGAACTCAAATTTGCACTGCCTGGAAAAGAAAGACAGGATTCTGCTGTTGATCCTAACTCTGAACTTGTTTGCATTCATGATTCTGCAAGACCTTTGGTATTATCAGCAGATGTGAAAAAGGTCCTTAAAGATGGTTTATTGAATGGAGCTGCAGTTCTTGGTGTCCCTGTGAAGGCCACAATCAAAGAGGTATTTACTAAATGTTGGCACATGTCAATTCCCTCAACTCAGTTATTTTAA

>Glyma.17g002400.4 sequence-type=CDS polypeptide=Glyma.17g002400.4.p locus=Glyma.17g002400 ID=Glyma.17g002400.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTAGCTATTGGCTTTGGAGCCCCTCCTTCTCCACTTCCGTTTCATCTTCGCCTGGCTTCCTCTCCTTCTCCTTTGGCCTTCCCAATAATCCACAAATTCCAAAACGCAGGCAAGTCAGTGATAACAATCTGTTCAAAGAAAAATGCAAAATCAAGGGTGGTCACTCTCTGCTCTGCACCTGTGCAAGTTGATATGCAGGAGCAGGAGGTTAGTGATATTACTTTGAGAGAGAGAAGTGTTTCGGTTGTCCTATTGGCTGGAGGGCAGGGCAAGAGGATGGGAGCTAGCATGCCAAAGCAGTATCTTCCTCTTTTTGGTCAACCCATTGCTTTGTATAGTTTCCACACTTTTTTTCACCTGGTTCAAGTCAAAGAAATTATTGTGGTTTGTGATCCTTCATACAAGGACATTTTTGAAGATGCAAAGGGAGATTACCAAGCAGAACTCAAATTTGCACTGCCTGGAAAAGAAAGACAGGATTCTGTTTATAATGGCTTTCAGGAATGTGCAATTTTTTAA
Predicted protein sequences of Glyma.17g002400
>Glyma.17g002400.1.p sequence-type=predicted peptide transcript=Glyma.17g002400.1 locus=Glyma.17g002400 ID=Glyma.17g002400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVAIGFGAPPSPLPFHLRLASSPSPLAFPIIHKFQNAGKSVITICSKKNAKSRVVTLCSAPVQEQEVSDITLRERSVSVVLLAGGQGKRMGASMPKQYLPLFGQPIALYSFHTFFHLVQVKEIIVVCDPSYKDIFEDAKGDYQAELKFALPGKERQDSAVDPNSELVCIHDSARPLVLSADVKKVLKDGLLNGAAVLGVPVKATIKEANRESFVVKTLDRKTLWEMQTPQVIKPELLRKGFELVNREGLEVTDDVSIVEHLKHPVYITQGSYTNIKVTTPDDMLLAERILNINDEDNIVLPVHL*

>Glyma.17g002400.2.p sequence-type=predicted peptide transcript=Glyma.17g002400.2 locus=Glyma.17g002400 ID=Glyma.17g002400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVAIGFGAPPSPLPFHLRLASSPSPLAFPIIHKFQNAGKSVITICSKKNAKSRVVTLCSAPVQEQEVSDITLRERSVSVVLLAGGQGKRMGASMPKQYLPLFGQPIALYSFHTFFHLVQVKEIIVVCDPSYKDIFEDAKGDYQAELKFALPGKERQDSAVDPNSELVCIHDSARPLVLSADVKKVLKDGLLNGAAVLGVPVKATIKEQPCCRQTGSRLLLKHWTEKRYGRCRPHRLSSLSC*

>Glyma.17g002400.3.p sequence-type=predicted peptide transcript=Glyma.17g002400.3 locus=Glyma.17g002400 ID=Glyma.17g002400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVAIGFGAPPSPLPFHLRLASSPSPLAFPIIHKFQNAGKSVITICSKKNAKSRVVTLCSAPVQEQEVSDITLRERSVSVVLLAGGQGKRMGASMPKQYLPLFGQPIALYSFHTFFHLVQVKEIIVVCDPSYKDIFEDAKGDYQAELKFALPGKERQDSAVDPNSELVCIHDSARPLVLSADVKKVLKDGLLNGAAVLGVPVKATIKEVFTKCWHMSIPSTQLF*

>Glyma.17g002400.4.p sequence-type=predicted peptide transcript=Glyma.17g002400.4 locus=Glyma.17g002400 ID=Glyma.17g002400.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVAIGFGAPPSPLPFHLRLASSPSPLAFPIIHKFQNAGKSVITICSKKNAKSRVVTLCSAPVQVDMQEQEVSDITLRERSVSVVLLAGGQGKRMGASMPKQYLPLFGQPIALYSFHTFFHLVQVKEIIVVCDPSYKDIFEDAKGDYQAELKFALPGKERQDSVYNGFQECAIF*






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