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Report for Sequence Feature Glyma.17g000300

Feature Type:gene_model
Chromosome:Gm17
Start:17407
stop:21108
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17g000300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G44370.1AT phosphate transporter 4;6 JGI N/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport JGI N/AIEA
GO:0098656GO-bp anion transmembrane transport EnsemblGenomesN/AIEA
GO:0009536GO-cc plastid EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0005315GO-mf inorganic phosphate transmembrane transporter activity EnsemblGenomesN/AIEA
KOG2532 KOG Permease of the major facilitator superfamily JGI N/AIEA
PTHR11662Panther SODIUM-DEPENDENT PHOSPHATE TRANSPORTERS JGI N/AIEA
PTHR11662:SF23Panther JGI N/AIEA
PF07690PFAM Major Facilitator Superfamily JGI N/AIEA

Expression Patterns of Glyma.17g000300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17g000300
ParalogEvidenceComments
Glyma.07g274200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17g000300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g00230 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17g000300
>Glyma.17g000300.1 sequence-type=CDS polypeptide=Glyma.17g000300.1.p locus=Glyma.17g000300 ID=Glyma.17g000300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGCTCCCTGTGCGTTACTTGATTGTTATTTTGACCTTCGTCTGCACCTCGGTTTGCTACATCGAACGAGTTGGGTTTTCCATCGCGTACACAGTTGCTGCTGACGGTGCCGGAGTGAATCAATCGAGCAAAGGTACAATACTGTCCACCTTCTATTACGGATACGCCTGTTCTCAAGTTCCCGGAGGATGGGCAGCTCAGAAAATCGGGGGGAGGAGGGTCCTGCTTCTTTCCTTTCTGTTGTGGTCATTAACTTGTGCACTACTTCCTCTAGATCCCAATCGCGTTATGCTTTTAGTCATTGCTCGTTTGCTCGTTGGTATAGCACAAGGCTTCATTTTCCCCTCCATCCACACAGTTCTAGCTCAATGGGTTCCCCCTCACGAGAGATCTAGATCCGTCTCTCTCACCACTTCTGGGATGTACCTAGGTGCAGCTCTAGGTATGCTTCTTCTTCCTACTCTAGTCAAGTTCAGAGGTCCTCAATCTGTGTTTCTTGCGGAGGCCGCATTGGGCGCTTCATGGTCTTTACTTTGGTTCAAATACGCCACTGATCCCAAATCCACTGCCTCTGGTGTCGGGGAATCAGTCTTGCCCGTCAATAAAAAAATTGACACTCACAACAAAAAACCGCTTTCAGCCAAAATCCCCTGGGTCAAAATTTTAACCAGCTTCCCTGTGTGGGCGATTGTTGTCAACAATTTCACCTTTCACTATGCTTTATATGTGCTCATGAACTGGCTCCCAACCTACTTTGAATTGGGCCTTCAGCTTAGCCTGCAAGATATGGGTTCCTCTAAAATGATGCCCTATCTCAACATGTTCCTCTTCTCCAACATTGGCGGTGTTGTCGCGGACTACTTGATCACCAGGAGAATATTATCTGTCACCAAAACCAGGAAATTCTTGAACACTGTCGGATTCTTGGTTGCTTCTCTTGCCTTGGTGATCATTCCCAGTTTCAGAACTTCTGGTGGTGCTGTCTTCTGTTCTTCCGTGGCTCTTGGTTTCTTGGCACTTGGCAGAGCTGGCTTTGCCGTGAACCACATGGACATTGCTCCTAGATACGCTGGAATAGTGATGGGTGTTTCTAATACTGCCGGTACGTTAGCTGGCATTGTTGGCGTTGACCTGACTGGGAAGCTTCTTGAAGCTGCTAAGGCTGCTAATTCTGATCTTTCAAGTCCAGAAAGCTGGAGGGCAGTGTTTTCCATTCCTGGGTTTCTATGCATTTTTAGTTCTTTTGTATTTCTACTATTTTCAACTGGGGAGAGAATTTTTGATTGA
Predicted protein sequences of Glyma.17g000300
>Glyma.17g000300.1.p sequence-type=predicted peptide transcript=Glyma.17g000300.1 locus=Glyma.17g000300 ID=Glyma.17g000300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKLPVRYLIVILTFVCTSVCYIERVGFSIAYTVAADGAGVNQSSKGTILSTFYYGYACSQVPGGWAAQKIGGRRVLLLSFLLWSLTCALLPLDPNRVMLLVIARLLVGIAQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAALGMLLLPTLVKFRGPQSVFLAEAALGASWSLLWFKYATDPKSTASGVGESVLPVNKKIDTHNKKPLSAKIPWVKILTSFPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQLSLQDMGSSKMMPYLNMFLFSNIGGVVADYLITRRILSVTKTRKFLNTVGFLVASLALVIIPSFRTSGGAVFCSSVALGFLALGRAGFAVNHMDIAPRYAGIVMGVSNTAGTLAGIVGVDLTGKLLEAAKAANSDLSSPESWRAVFSIPGFLCIFSSFVFLLFSTGERIFD*






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