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Report for Sequence Feature Glyma.17G228100

Feature Type:gene_model
Chromosome:Gm17
Start:38305771
stop:38313230
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17G228100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G26140.1AT FTSH protease 4 JGI N/AIEA
GO:0006281GO-bp DNA repair JGI N/AIEA
GO:0006310GO-bp DNA recombination JGI N/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0006508GO-bp proteolysis JGI N/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0009941GO-cc chloroplast envelope EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0003678GO-mf DNA helicase activity JGI N/AIEA
GO:0004176GO-mf ATP-dependent peptidase activity EnsemblGenomesN/AIEA
GO:0004222GO-mf metalloendopeptidase activity EnsemblGenomesN/AIEA
GO:0004222GO-mf metalloendopeptidase activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0008237GO-mf metallopeptidase activity EnsemblGenomesN/AIEA
GO:0009378GO-mf four-way junction helicase activity JGI N/AIEA
GO:0016887GO-mf ATPase activity JGI N/AIEA
KOG0734 KOG AAA+-type ATPase containing the peptidase M41 domain JGI N/AIEA
PTHR23076Panther METALLOPROTEASE M41 FTSH JGI N/AIEA
PF00004PFAM ATPase family associated with various cellular activities (AAA) JGI N/AIEA
PF01434PFAM Peptidase family M41 JGI N/AIEA

Expression Patterns of Glyma.17G228100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17G228100 not represented in the dataset
Glyma.17G228100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17G228100
ParalogEvidenceComments
Glyma.14g096000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17G228100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g228100 Wm82.a4.v1ISS As supplied by JGI
Glyma17g34610 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.17G228100
>Glyma.17g228100.2 sequence-type=transcript locus=Glyma.17g228100 ID=Glyma.17g228100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTTTATTTCTGTTTCGTTGGGAACTCCTCATTTGCTGACTGCTAGGATTTGATGTTAAAGACTCTTCTAAATGCATTCTGTGTAGTCTCCTCTCCCCCCTCACCGACACATGCACACTCTTTTAAAGGCATGTCCAACTCAGTGAGTGAGGAAGAAACTTTAGCTGGTCTTTCTGCTTTAAGAAATACGAGAAAATCAGAAAAAGACAATACTATTGGAACTGCTAGTAATCCAATCTATATGGTGGCTAGAGACGGCGGGAATATAAAAGATCAGATATGGCGTACACTTAGGTTCATTGCAGTGTCCTTTTTCATGATTTCTGGTGTAGGAGCACTTATTGAAGATAAAGGAATTAGTAAAGGACTTGGTATAAATGAAGAAGTGCAACCTAGCATGGAATCAAGTACAAAATTTAGTGATGTAAAAGGTGTTGATGAGGCAAAGGAAGAGCTGGAAGAAATTGTTCACTACCTTCGAGATCCAAAGCGCTTTACTCGTCTTGGTGGTAAGCTTCCGAAAGGAGTTTTACTTGTTGGTCCACCTGGCACTGGGAAAACAATGTTAGCTAGAGCTATTGCTGGAGAGGCTGGGGTTCCATTCTTCTCCTGCAGTGGAAGTGAATTTGAAGAGATGTATGTTGGTGTTGGTGCACGAAGGGTGAGGGATCTTTTTTCTGCTGCAAGGAAGCGAGCACCTGCTATAATATTCATTGATGAGATAGATGCTATTGGAGGAAAACGAAATGCAAAGGACCAAATGTACATGAAGATGACATTAAATCAGTTACTGGTTGAGCTAGATGGATTCAAGCAAAATGAGGGCATAATTGTGATTGGCGCTACTAATTTTCCACAATCATTGGATAAGGCATTGGTGAGACCTGGGCGGTTTGATCGCCATGTTATTGTTCCCAATCCGGATGTAAAAGGAAGACAGCAGATTTTGGAATCACACATGTCAAAGGTTCTGAAGGCTGATGATGTTGATCTAATGATCATTGCCAGAGGAACACCTGGGTTCTCTGGTGCTGACCTTGCAAACTTGATTAACATTGCTGCTATCAAGGCTGCAATGGATGGTGCTAAAGCTGTGAGCATGGCTGATTTAGAGCATGCAAAAGACAAGATCCTGATGGGAAGTGAACGCAAGTCAGCTGTCATATCTGCGGAGTCACGGAAGTTGACTGCTTTCCACGAGGGTGGCCATGCCCTTGTGGCCATCCATACTGATGGGGCCCTCCCTGTTCACAAGGCAACTATAGTTCCCCGTGGAATGGCTCTTGGCATGGTTACTCAATTGCCTGACCAGGACCAGACCAGCGTTTCCCGTAAACAGATGCTTGCTCGGCTTGATGTTTGCATGGGAGGTCGTGTCGCTGAAGAGCTAATTTTCGGAGAGAACGAAGTCACTTCTGGTGCATCCTCAGATCTCAGGCAAGCAACCAGTCTGGCAAGGGAAATGGTTACCAAATATGGCATGGGCAATGAAGTTGGACTAGTCACTCACGATTACAAAGATGATGGTAGGAGCATGAGCTCAGAGACTAGGCTTCTTATTGAGAAAGAGGTGAAGCAATTCCTGGAGAGGGCCTACAACAATGCAAAAACTATTCTGACCACTCACAACAAGGAGCTTCATGCACTTGCAAATGCCCTTCTGGAGCACGAGACACTTTCAGGAACTCAGATAAAGACATTGCTTGCCCAAGTTAGATCTCAGATgctgcagcagcagcagcagcagcCACCCCAAACAATTGAAGCTCAGAGCAGTTTACAATCCAACACGGTGCCTCCATCATCCAGCAACCCGGCATctgctgctgccgctgctgctgccgccacagctgcagcaacagctactgctgccgccgcCAAGGCTAACAGTGCTCCAGTGGGATCTTAGCAGGACAAGATGCCGGAGATGGGTAGCAAACATAACTTTGTACGGCCAGATTGAAATGTGCTTATAGTATTTTTTTTTTTTCAGGTTTTTTTCACTTGGAGGAACTCAACTCATGCACCTTGGAGTCTAGTTGACATAAAAGTATATACATTTTCGTTTCTCATTGTTTGTAGGGTACAATGATAAATTAAAGAGATTATCAGTTGCCTCCAACTCAATCTGGTACTCTCACTCGATCTTTTTCAGACAATAAATTATAACAAATTACCTTGTTCAATT
Coding sequences of Glyma.17G228100
>Glyma.17g228100.1 sequence-type=CDS polypeptide=Glyma.17g228100.1.p locus=Glyma.17g228100 ID=Glyma.17g228100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTTGCGGCTTTTGGTATCGCAGGTTGCAAGACGACAGATTAAAAGTGTGTTTGCTACAAGCTATTTTTCTGTCAATAAGTTTGGAGATCGTGCAGGGAATAGGCTTTTGGGTGCCCAAGAGAGATTTCAGTCTAGCTACCTTAGTAGCATAGCTCGTCGAGCACGTGATGCGGATGAAGCCTCTGAAGTTGCATATCTCAAAGAACTTTACCATCAAAATGATCCTGAGGCTGTGATTAGAGTATTTGAAAGCCAGCCATCTCTGCATAATAGTCCCTCAGCTCTATCTGAATATGTAAAAGCATTGGTGAAAGTTGATAGGCTTGATGAAAGTCAATTACTGAAGACACTAAGGAGAGGCATGTCCAACTCAGTGAGTGAGGAAGAAACTTTAGCTGGTCTTTCTGCTTTAAGAAATACGAGAAAATCAGAAAAAGACAATACTATTGGAACTGCTAGTAATCCAATCTATATGGTGGCTAGAGACGGCGGGAATATAAAAGATCAGATATGGCGTACACTTAGGTTCATTGCAGTGTCCTTTTTCATGATTTCTGGTGTAGGAGCACTTATTGAAGATAAAGGAATTAGTAAAGGACTTGGTATAAATGAAGAAGTGCAACCTAGCATGGAATCAAGTACAAAATTTAGTGATGTAAAAGGTGTTGATGAGGCAAAGGAAGAGCTGGAAGAAATTGTTCACTACCTTCGAGATCCAAAGCGCTTTACTCGTCTTGGTGGTAAGCTTCCGAAAGGAGTTTTACTTGTTGGTCCACCTGGCACTGGGAAAACAATGTTAGCTAGAGCTATTGCTGGAGAGGCTGGGGTTCCATTCTTCTCCTGCAGTGGAAGTGAATTTGAAGAGATGTATGTTGGTGTTGGTGCACGAAGGGTGAGGGATCTTTTTTCTGCTGCAAGGAAGCGAGCACCTGCTATAATATTCATTGATGAGATAGATGCTATTGGAGGAAAACGAAATGCAAAGGACCAAATGTACATGAAGATGACATTAAATCAGTTACTGGTTGAGCTAGATGGATTCAAGCAAAATGAGGGCATAATTGTGATTGGCGCTACTAATTTTCCACAATCATTGGATAAGGCATTGGTGAGACCTGGGCGGTTTGATCGCCATGTTATTGTTCCCAATCCGGATGTAAAAGGAAGACAGCAGATTTTGGAATCACACATGTCAAAGGTTCTGAAGGCTGATGATGTTGATCTAATGATCATTGCCAGAGGAACACCTGGGTTCTCTGGTGCTGACCTTGCAAACTTGATTAACATTGCTGCTATCAAGGCTGCAATGGATGGTGCTAAAGCTGTGAGCATGGCTGATTTAGAGCATGCAAAAGACAAGATCCTGATGGGAAGTGAACGCAAGTCAGCTGTCATATCTGCGGAGTCACGGAAGTTGACTGCTTTCCACGAGGGTGGCCATGCCCTTGTGGCCATCCATACTGATGGGGCCCTCCCTGTTCACAAGGCAACTATAGTTCCCCGTGGAATGGCTCTTGGCATGGTTACTCAATTGCCTGACCAGGACCAGACCAGCGTTTCCCGTAAACAGATGCTTGCTCGGCTTGATGTTTGCATGGGAGGTCGTGTCGCTGAAGAGCTAATTTTCGGAGAGAACGAAGTCACTTCTGGTGCATCCTCAGATCTCAGGCAAGCAACCAGTCTGGCAAGGGAAATGGTTACCAAATATGGCATGGGCAATGAAGTTGGACTAGTCACTCACGATTACAAAGATGATGGTAGGAGCATGAGCTCAGAGACTAGGCTTCTTATTGAGAAAGAGGTGAAGCAATTCCTGGAGAGGGCCTACAACAATGCAAAAACTATTCTGACCACTCACAACAAGGAGCTTCATGCACTTGCAAATGCCCTTCTGGAGCACGAGACACTTTCAGGAACTCAGATAAAGACATTGCTTGCCCAAGTTAGATCTCAGATGCTGCAGCAGCAGCAGCAGCAGCCACCCCAAACAATTGAAGCTCAGAGCAGTTTACAATCCAACACGGTGCCTCCATCATCCAGCAACCCGGCATCTGCTGCTGCCGCTGCTGCTGCCGCCACAGCTGCAGCAACAGCTACTGCTGCCGCCGCCAAGGCTAACAGTGCTCCAGTGGGATCTTAG

>Glyma.17g228100.2 sequence-type=CDS polypeptide=Glyma.17g228100.2.p locus=Glyma.17g228100 ID=Glyma.17g228100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTAAAGACTCTTCTAAATGCATTCTGTGTAGTCTCCTCTCCCCCCTCACCGACACATGCACACTCTTTTAAAGGCATGTCCAACTCAGTGAGTGAGGAAGAAACTTTAGCTGGTCTTTCTGCTTTAAGAAATACGAGAAAATCAGAAAAAGACAATACTATTGGAACTGCTAGTAATCCAATCTATATGGTGGCTAGAGACGGCGGGAATATAAAAGATCAGATATGGCGTACACTTAGGTTCATTGCAGTGTCCTTTTTCATGATTTCTGGTGTAGGAGCACTTATTGAAGATAAAGGAATTAGTAAAGGACTTGGTATAAATGAAGAAGTGCAACCTAGCATGGAATCAAGTACAAAATTTAGTGATGTAAAAGGTGTTGATGAGGCAAAGGAAGAGCTGGAAGAAATTGTTCACTACCTTCGAGATCCAAAGCGCTTTACTCGTCTTGGTGGTAAGCTTCCGAAAGGAGTTTTACTTGTTGGTCCACCTGGCACTGGGAAAACAATGTTAGCTAGAGCTATTGCTGGAGAGGCTGGGGTTCCATTCTTCTCCTGCAGTGGAAGTGAATTTGAAGAGATGTATGTTGGTGTTGGTGCACGAAGGGTGAGGGATCTTTTTTCTGCTGCAAGGAAGCGAGCACCTGCTATAATATTCATTGATGAGATAGATGCTATTGGAGGAAAACGAAATGCAAAGGACCAAATGTACATGAAGATGACATTAAATCAGTTACTGGTTGAGCTAGATGGATTCAAGCAAAATGAGGGCATAATTGTGATTGGCGCTACTAATTTTCCACAATCATTGGATAAGGCATTGGTGAGACCTGGGCGGTTTGATCGCCATGTTATTGTTCCCAATCCGGATGTAAAAGGAAGACAGCAGATTTTGGAATCACACATGTCAAAGGTTCTGAAGGCTGATGATGTTGATCTAATGATCATTGCCAGAGGAACACCTGGGTTCTCTGGTGCTGACCTTGCAAACTTGATTAACATTGCTGCTATCAAGGCTGCAATGGATGGTGCTAAAGCTGTGAGCATGGCTGATTTAGAGCATGCAAAAGACAAGATCCTGATGGGAAGTGAACGCAAGTCAGCTGTCATATCTGCGGAGTCACGGAAGTTGACTGCTTTCCACGAGGGTGGCCATGCCCTTGTGGCCATCCATACTGATGGGGCCCTCCCTGTTCACAAGGCAACTATAGTTCCCCGTGGAATGGCTCTTGGCATGGTTACTCAATTGCCTGACCAGGACCAGACCAGCGTTTCCCGTAAACAGATGCTTGCTCGGCTTGATGTTTGCATGGGAGGTCGTGTCGCTGAAGAGCTAATTTTCGGAGAGAACGAAGTCACTTCTGGTGCATCCTCAGATCTCAGGCAAGCAACCAGTCTGGCAAGGGAAATGGTTACCAAATATGGCATGGGCAATGAAGTTGGACTAGTCACTCACGATTACAAAGATGATGGTAGGAGCATGAGCTCAGAGACTAGGCTTCTTATTGAGAAAGAGGTGAAGCAATTCCTGGAGAGGGCCTACAACAATGCAAAAACTATTCTGACCACTCACAACAAGGAGCTTCATGCACTTGCAAATGCCCTTCTGGAGCACGAGACACTTTCAGGAACTCAGATAAAGACATTGCTTGCCCAAGTTAGATCTCAGATGCTGCAGCAGCAGCAGCAGCAGCCACCCCAAACAATTGAAGCTCAGAGCAGTTTACAATCCAACACGGTGCCTCCATCATCCAGCAACCCGGCATCTGCTGCTGCCGCTGCTGCTGCCGCCACAGCTGCAGCAACAGCTACTGCTGCCGCCGCCAAGGCTAACAGTGCTCCAGTGGGATCTTAG
Predicted protein sequences of Glyma.17G228100
>Glyma.17g228100.1.p sequence-type=predicted peptide transcript=Glyma.17g228100.1 locus=Glyma.17g228100 ID=Glyma.17g228100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALRLLVSQVARRQIKSVFATSYFSVNKFGDRAGNRLLGAQERFQSSYLSSIARRARDADEASEVAYLKELYHQNDPEAVIRVFESQPSLHNSPSALSEYVKALVKVDRLDESQLLKTLRRGMSNSVSEEETLAGLSALRNTRKSEKDNTIGTASNPIYMVARDGGNIKDQIWRTLRFIAVSFFMISGVGALIEDKGISKGLGINEEVQPSMESSTKFSDVKGVDEAKEELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMYVGVGARRVRDLFSAARKRAPAIIFIDEIDAIGGKRNAKDQMYMKMTLNQLLVELDGFKQNEGIIVIGATNFPQSLDKALVRPGRFDRHVIVPNPDVKGRQQILESHMSKVLKADDVDLMIIARGTPGFSGADLANLINIAAIKAAMDGAKAVSMADLEHAKDKILMGSERKSAVISAESRKLTAFHEGGHALVAIHTDGALPVHKATIVPRGMALGMVTQLPDQDQTSVSRKQMLARLDVCMGGRVAEELIFGENEVTSGASSDLRQATSLAREMVTKYGMGNEVGLVTHDYKDDGRSMSSETRLLIEKEVKQFLERAYNNAKTILTTHNKELHALANALLEHETLSGTQIKTLLAQVRSQMLQQQQQQPPQTIEAQSSLQSNTVPPSSSNPASAAAAAAAATAAATATAAAAKANSAPVGS*

>Glyma.17g228100.2.p sequence-type=predicted peptide transcript=Glyma.17g228100.2 locus=Glyma.17g228100 ID=Glyma.17g228100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLKTLLNAFCVVSSPPSPTHAHSFKGMSNSVSEEETLAGLSALRNTRKSEKDNTIGTASNPIYMVARDGGNIKDQIWRTLRFIAVSFFMISGVGALIEDKGISKGLGINEEVQPSMESSTKFSDVKGVDEAKEELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMYVGVGARRVRDLFSAARKRAPAIIFIDEIDAIGGKRNAKDQMYMKMTLNQLLVELDGFKQNEGIIVIGATNFPQSLDKALVRPGRFDRHVIVPNPDVKGRQQILESHMSKVLKADDVDLMIIARGTPGFSGADLANLINIAAIKAAMDGAKAVSMADLEHAKDKILMGSERKSAVISAESRKLTAFHEGGHALVAIHTDGALPVHKATIVPRGMALGMVTQLPDQDQTSVSRKQMLARLDVCMGGRVAEELIFGENEVTSGASSDLRQATSLAREMVTKYGMGNEVGLVTHDYKDDGRSMSSETRLLIEKEVKQFLERAYNNAKTILTTHNKELHALANALLEHETLSGTQIKTLLAQVRSQMLQQQQQQPPQTIEAQSSLQSNTVPPSSSNPASAAAAAAAATAAATATAAAAKANSAPVGS*






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