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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G25170.1 | AT | chromatin remodeling factor CHD3 (PICKLE) | JGI | N/A | IEA |
| GO:0006355 | GO-bp | regulation of transcription, DNA-templated | JGI | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | JGI | N/A | IEA |
| GO:0003676 | GO-mf | nucleic acid binding | JGI | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | JGI | N/A | IEA |
| GO:0004386 | GO-mf | helicase activity | JGI | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0008270 | GO-mf | zinc ion binding | JGI | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | JGI | N/A | IEA |
| GO:0016818 | GO-mf | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | JGI | N/A | IEA |
| KOG0384 | KOG | Chromodomain-helicase DNA-binding protein | JGI | N/A | IEA |
| PTHR10799 | Panther | SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED | JGI | N/A | IEA |
| PTHR10799:SF131 | Panther | CHROMATIN REMODELING 4 PROTEIN | JGI | N/A | IEA |
| PF00176 | PFAM | SNF2 family N-terminal domain | JGI | N/A | IEA |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | N/A | IEA |
| PF00385 | PFAM | Chromo (CHRromatin Organisation MOdifier) domain | JGI | N/A | IEA |
| PF06461 | PFAM | Domain of Unknown Function (DUF1086) | JGI | N/A | IEA |
| PF06465 | PFAM | Domain of Unknown Function (DUF1087) | JGI | N/A | IEA |
| PF08074 | PFAM | CHDCT2 (NUC038) domain | JGI | N/A | IEA |
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Glyma.17G217300 not represented in the dataset |
Glyma.17G217300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g217300 | Wm82.a4.v1 | ISS | As supplied by JGI |
| Glyma17g33261 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g217300.1 sequence-type=CDS polypeptide=Glyma.17g217300.1.p locus=Glyma.17g217300 ID=Glyma.17g217300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAGGACATTGTTCAAGGATACGAATGGTTGAAGTTGAATTCTTTAGCATCTAGTAACAAGAGCATGATATCCATTAAATATAGCAATGTTAGCTCACTGAATAATATTGATAAGATATTAGATTGTGAGAAGCGTTCTGGGGTAGCTTGTGAAAGTGATGCAACAAAATTGGGGTCAAAGCAAAGCTTTGTCAAGCAATATCTCGTTAAGTGGAAGGGACTATCATATTTGCACTGCACATGGGTTCCAGAGGAAGAGTTTCTGAAAGCTTTCAAGAATCATCCAGGCCTAAAGACCAAAATAAACAACTTCCATCGTCATATAGCATCAGCCAATAATCCTAATGAAGATTTTGTTGCCATTCGACCTGAATGGACTATGGTTGATCGAATACTTGCTTGCAGGGGTCATGATGATAAGAAGGAATATCTTGTGAAGTGGAAAGAGCTTCCATATGATGAATGCTATTGGGAGCTCAAGTCAGATATCTCTGCATTTCAAACAGAGATAGAAAGATTTAACACCTTTAAGTCTAGATCAAGGAAACTTTTGTCTAGTAAGAAAAAGCGTAGTGTTGAGGATGATGCTGAACTGAATAAGCAGCAGAAAGAATTTCTACAGTATGAACATAGTCTTCAATTTCTTTCAGGGGGTGCACTGCATTCATATCAACTTGAAGGATTGAACTTCTTGCGATTCTCATGGTACAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTCGGCAAAACCATACAGAGTATTGCTTTCCTAGCATCCCTTTTTGAAGAGAATGTTTCTCCACATCTGGTGGTTGCTCCACTTTCAACATTACGAAACTGGGAACGTGAATTTGCAACTTGGGCTCCTCAAATGAATGTTGTTATGTATTTTGGATCTGCCAAAGCTCGTGCTTTTATTAGAGAGTATGAATTTTACTTTCCAAAGAATCAAAAGAGGATCAAGAAAAAAAAATCTAGACAGATAGTTAACGAAAGCAAACAAGAAAGGATCAAGTTTGATGTCCTTTTGACATCATATGAGATTATAAATTCTGATACATCATCATTGAAACATATAAAGTGGGAGTGCATGATAGTTGATGAAGGTCATCGTCTCAAAAACAAGGACTCTAAATTATTTTCTTCATTGAAGCAATATTCTAGCAAACATCGTGTGCTTTTAACAGGAACTCCACTTCAGAACAATCTGGATGAACTTTTTATGCTTATGCACTTCCTTGATGCTGGAAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAAGGATATCAATCGAGAGGAGCAGATTTTGAGACTACATAAAATGTTGGCGCCACATCTCTTGCGAAGACTGAAGAAAGATGTCATGAAGGAACTTCCTCCAAAAAAGGAACTTATTTTGCGTGTTGAGTTATGCAGCAAACAGAAAGAATACTACAAGGCAATTTTGACCCGTAATTATCAGATATTAACCCACCAAGGTGGTGCACACATTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTCTGTTGTCATCCCTATATGTTACAAGGAGTTCAACCAGACCTAAAGGATGAAAAAGAATCATACAAGCAATTTCTTGAATCGTCTGGGAAGTTGCAATTGTTGGATAAGATGATGGTGAAGCTTAAAGAGCAAGGACATAGAGTTCTCATATATTCCCAATTTCAGCACATGCTGGATTTGCTTGAAGATTACTGTGTTTACAAGCATTGGCAGTATGAGAGGATAGATGGCAAGGTTGGAGGAGCTGAAAGACAAGTACGAATAGATCGGTTTAATGCTAAAAATTCTTCAAGATTTTGTTTCATTCTTTCTACTAGAGCTGGGGGATTGGGAATAAACCTAACAACAGCTGACACAGTTATTATATATGACAGTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCTAGAGCTCATCGACTTGGACAAACTAACAAGGTGATGATTTATAGGCTTATAACGAGGGGAACAATTGAGGAAAGGATGATTCAGATTACAAAGAAGAAAATGGTGTTAGAACACCTAGTTGTAGGGAGTCTAAAGGCTCAAAACATTAACCAGGAAGAGTTAGATGATATCGTAAGGTATGGCTCAAAGGAGTTGTTTGCTGATGAGAATGATGAAGTTGGCAAATCTCGCCTAATTCATTATGATGATGAAGCAATAGACAGACTGCTGGATCGAGATCAACTTGGAGATGAAAAGGCTGCTGTAGATGGTGAAGATGAAGATGGATTTTTGAAGGCCTTTAAGGTGGCAAATTTTGAATATGTTGAGGAAGTTGAGCCATCAGAGGAGGTGACACAAAATAGAGCAAAGGAGAACCAATCCTCTGTGACTAGTTCAAAAAGAACAAATTACTGGGAAGAGTTGTTGAAAAATGCATATGAAGAGAATAAAGTTGAAGAGTTAAATGCCTTGGGCAAAGGCAAGCGAAACAGAAATAAATGGCTGGGGGGCGGTTTTAGTGGTTTGGAAGATGTAAGCTCTGATGATGAAGATGACAGTTACAAAGAGGATCTTACTGATGATGATTCAAATTCAACTGAAACTACTACTACTAGAAGGCCTCACAAAAAGAAAGCTCGTGATAGCATGGGGCCACTTCCTTTAATGGAAGGTGAAGGAAGATCTCTGAAAGTACTTGGTTTTACTCAAAATCAAAGGGCTGCATTTGTTCAAATTTTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAAGAATTTACTTCCCGCATGAAACAGAAGAGTTATGAAGAAATCATGGAGTATGGAAAACTTTTCTTGTCTCATATTGCAGAAGATATAACAGATTCCCCTACATTCACAGATGGTGTTCCAAAAGAAGGACTTCGAATAAAAGATATACTTGCAAGGATTGCAGTTCTGCTCTTGATAAGGGACAAAGTGAAGTTTGCTTCAGAAAATCCTCGAACTCGGGTTTTTTCAGATGATATCTTATTACGCTATGCAGGTTTGAAGGGGGCAAAAATATGGAAGGAGGAGCATGATTTGGTGTTACTGCATGCTGTGCTGAAGCATGGCTATGGAAGGTGGCATGATATTGTTGATGATAAGGATCTGAAGATTCAAGAGGTCATCACTCAGGAGTTGAATATTCCATTTACAAAATTACCAGTTCATGGACAAGTTTGCTCTCAAGTGTACAATAGTGCAAATATGACAAATGTGGAGTCCAGCTGCAACCCTTCTGCTGAAACTGATAAGAGTGACATAGCAGATGATGGTGCAAATATGACAAATCTGCAATCGAGCTGCAACCAATCTAAGGAGAGTGGTGTGAGTAACATTGCTGCTGAAGGGGCACATGGTTCTGGTGATTCTGGGAATCAAGCACAGTTTAGAGACATGCAGAGAAGACATATTGAGTTTATAAAAAAAAGGTTTCTTCTCTTGGAAAAAGGTCTAAACGCCGAGTACCAGAAAGAATACTTTAGTGATTTGAAAGTAAATGAGGTGGAAAATGATGAACCTAAAGCTGACATTCAAATGATTGGTCAACTGCCTCGAATCGAAGCAATAGGTTCAGAAGAAATTTCTATTTCTGCATATGATTGTGATCCTGATCGATTGCAATTAGTTTGTCTTTACAACAAGATGTGCAAGACTGTGGAGGAAAACACCATGAATTTAATTCAGGAGTTATCGGCAAGAGAACTAACAGAAGTCAACGTTATTAAGAACTTCCATCAACTGGAAATCATTTCAGCGGATGTCAACAGAATTCTAAATCAACAAAATAAATGTTCAGCTGAAACGCAAGTACTAAATTCTAACAAATCGAATACTTTATCACAGACTGAAGTTGTGGGCTCTGGACTGCTGTCTAGTTCTCAAGATAAATGCAAAGCTGAAGATGTTGTAATGGTGTGTGAACCTAAAAAAGAAAGTGATCAGGTTACCAAGATTTCCCAATACATGGGGAACTGA
>Glyma.17g217300.1.p sequence-type=predicted peptide transcript=Glyma.17g217300.1 locus=Glyma.17g217300 ID=Glyma.17g217300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEDIVQGYEWLKLNSLASSNKSMISIKYSNVSSLNNIDKILDCEKRSGVACESDATKLGSKQSFVKQYLVKWKGLSYLHCTWVPEEEFLKAFKNHPGLKTKINNFHRHIASANNPNEDFVAIRPEWTMVDRILACRGHDDKKEYLVKWKELPYDECYWELKSDISAFQTEIERFNTFKSRSRKLLSSKKKRSVEDDAELNKQQKEFLQYEHSLQFLSGGALHSYQLEGLNFLRFSWYKQTHVILADEMGLGKTIQSIAFLASLFEENVSPHLVVAPLSTLRNWEREFATWAPQMNVVMYFGSAKARAFIREYEFYFPKNQKRIKKKKSRQIVNESKQERIKFDVLLTSYEIINSDTSSLKHIKWECMIVDEGHRLKNKDSKLFSSLKQYSSKHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINREEQILRLHKMLAPHLLRRLKKDVMKELPPKKELILRVELCSKQKEYYKAILTRNYQILTHQGGAHISLINVVMELRKLCCHPYMLQGVQPDLKDEKESYKQFLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCVYKHWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFILSTRAGGLGINLTTADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLITRGTIEERMIQITKKKMVLEHLVVGSLKAQNINQEELDDIVRYGSKELFADENDEVGKSRLIHYDDEAIDRLLDRDQLGDEKAAVDGEDEDGFLKAFKVANFEYVEEVEPSEEVTQNRAKENQSSVTSSKRTNYWEELLKNAYEENKVEELNALGKGKRNRNKWLGGGFSGLEDVSSDDEDDSYKEDLTDDDSNSTETTTTRRPHKKKARDSMGPLPLMEGEGRSLKVLGFTQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKSYEEIMEYGKLFLSHIAEDITDSPTFTDGVPKEGLRIKDILARIAVLLLIRDKVKFASENPRTRVFSDDILLRYAGLKGAKIWKEEHDLVLLHAVLKHGYGRWHDIVDDKDLKIQEVITQELNIPFTKLPVHGQVCSQVYNSANMTNVESSCNPSAETDKSDIADDGANMTNLQSSCNQSKESGVSNIAAEGAHGSGDSGNQAQFRDMQRRHIEFIKKRFLLLEKGLNAEYQKEYFSDLKVNEVENDEPKADIQMIGQLPRIEAIGSEEISISAYDCDPDRLQLVCLYNKMCKTVEENTMNLIQELSARELTEVNVIKNFHQLEIISADVNRILNQQNKCSAETQVLNSNKSNTLSQTEVVGSGLLSSSQDKCKAEDVVMVCEPKKESDQVTKISQYMGN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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