SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.17G188500

Feature Type:gene_model
Chromosome:Gm17
Start:24483766
stop:24491047
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17G188500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G24800.1AT basic leucine zipper 9 JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0003700GO-mf sequence-specific DNA binding transcription factor activity JGI N/AIEA
GO:0043565GO-mf sequence-specific DNA binding JGI N/AIEA
PTHR22952Panther CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED JGI N/AIEA
PTHR22952:SF6Panther G-BOX-BINDING FACTOR 2-RELATED JGI N/AIEA
PF00170PFAM bZIP transcription factor JGI N/AIEA
PF12498PFAM Basic leucine-zipper C terminal JGI N/AIEA

Proteins Associated with Glyma.17G188500
LocusGene SymbolProtein Name
bZIP136 Basic leucine zipper transcription factor-like protein gene 136

Expression Patterns of Glyma.17G188500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17G188500 not represented in the dataset
Glyma.17G188500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.17G188500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g188500 Wm82.a4.v1ISS As supplied by JGI
Glyma17g24602 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.17G188500
>Glyma.17g188500.2 sequence-type=transcript locus=Glyma.17g188500 ID=Glyma.17g188500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTCTCTCTCCCTCTACTCTCCCCACCTCTTTCTCATTTTTCGGCCATGGAGTCCAAGTGGGGCGCCGCCGCCACCAGCATCATAGCGGCAAACTTCGACGACTTCAAGTGGATCGCCTCCATGTTCTATCCCGACGTTGCAAACGACAACGTCAAGCCATGCAAGCTCGATCCTTTCACCGACGAAGCTTTCCAAAACCTGTTGGGAGCCCATTGTCTGCTAATAAACCAAACGCGAGAGATAATCAAGTAAAAGGGGCCACCACCACTACAAGTGGTTCCTCACGTGAGCCATCTGATGAGGATGATGAAGCAGGTCCTTGTGAACAAAGCACAAACGCTATTGATGTGAAGCGCCTAAGAAGGAAGGTTTCTAATCGAGAGTCTGCAAGGAGGTCCAGGAGGAGAAAACAAGCCCATTTGGCTGACCTGGAGTGGCAAGTCGAACGGTTGAGACTTGAAAACGCAAACCTATTTAAGCAGCTTACAGATGCCAGCCAACAATTTCGTGAAGCTGATACAAATAATCGAGTCCTAAAATCAGATGTCGAAGCTTTGAGAGCTAAGGTGAAATTAGCTGAGGATATGATCACTCGTGGCACACTCACCCCTACCAACAACCAGATTCTTCAAAATCAGAGTCCACTAAACACCCCACCTCAACTCAACACGAATAATTTACGCCGCATGGGATATGTTTCGCCAACCTTCACCGTCCATGGGAATGATGCTACTGCTTCATATGGTGGTGGAATCACAGTTAGTGGACAAAATTCACCGCTTGGTGGGCTTGGAAACTTGGATAATATTCCATGCAGCGATTTCAATAGTGGAGTCAATAGCGATAATGCTGTGAGCTCTATGACTAGCATGTGGCCTTAATTAACTTGACGTAATTTTTATGGGTGAtgttaggtgcactcagtattttttgaaaatgtcaaaactgccctccgctatcttcttcttttaaaagctgttttttttTGTGTGTGCAAAAATGTTAGCGCAGTGTttctttcgtacgaatcaagttgatccacaaggttgatacggatcaagttgatccatatcttgatattaagcatacagattaacttgatccgtaaaagccttacggatcaacttgatccgtaagcttatagaaaatttcaacggtgcagcaccaacagaagaagaatacgcaaagtcgaggtgaagaccaccaccaccatgctgccaataatgttgaagaagaacgcgcaaaagaagacaaagggcagtcgcggatggaaaacgaaacgaaagagacaaggtgcgtaaggaagaaaaagtgctgggtgcactaatatttttaaaaatatgtcaggggtatttcagtctttttcccttaagtgttgggtgcaccagcaataatgctggttgcacctagcatcacccAATTTTTATTACACCTCATCTTGTAGTAGTGTCCAGTTAGATATAATATTATGTATGCCTTAATTTATTAGATTTGTATTTAGGTTATATTGTGGAAAATAACAAAGGGCTTTCTACATGTCAGATCCCGTCTAGAATACTTAGCATGGTTTGTGTTAAATAGtttctttctttttcttttttttttttttttGCTTAATTTGCATGTactactaaaaaaatattttccacaatggttattggacacattcgacgatgatttt
Coding sequences of Glyma.17G188500
>Glyma.17g188500.1 sequence-type=CDS polypeptide=Glyma.17g188500.1.p locus=Glyma.17g188500 ID=Glyma.17g188500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGTCCAAGTGGGGCGCCGCCGCCACCAGCATCATAGCGGCAAACTTCGACGACTTCAAGTGGATCGCCTCCATGTTCTATCCCGACGTTGCAAACGACAACGTCAAGCCATGCAAGCTCGATCCTTTCACCGACGAAGCTTTCCAAAACCTGGAGGCAGTAACCGCATCTTCAACATGTGGTGGAGTAACAGAAGATACCCTTGTCCACTCCCAAAACCTCACTCCCATTCAATCCACTATCTCTGCAACTATTGATTCTCTGTCTTCCATTTGTGTTGGGAGCCCATTGTCTGCTAATAAACCAAACGCGAGAGATAATCAAGTAAAAGGGGCCACCACCACTACAAGTGGTTCCTCACGTGAGCCATCTGATGAGGATGATGAAGCAGGTCCTTGTGAACAAAGCACAAACGCTATTGATGTGAAGCGCCTAAGAAGGAAGGTTTCTAATCGAGAGTCTGCAAGGAGGTCCAGGAGGAGAAAACAAGCCCATTTGGCTGACCTGGAGTGGCAAGTCGAACGGTTGAGACTTGAAAACGCAAACCTATTTAAGCAGCTTACAGATGCCAGCCAACAATTTCGTGAAGCTGATACAAATAATCGAGTCCTAAAATCAGATGTCGAAGCTTTGAGAGCTAAGGTGAAATTAGCTGAGGATATGATCACTCGTGGCACACTCACCCCTACCAACAACCAGATTCTTCAAAATCAGAGTCCACTAAACACCCCACCTCAACTCAACACGAATAATTTACGCCGCATGGGATATGTTTCGCCAACCTTCACCGTCCATGGGAATGATGCTACTGCTTCATATGGTGGTGGAATCACAGTTAGTGGACAAAATTCACCGCTTGGTGGGCTTGGAAACTTGGATAATATTCCATGCAGCGATTTCAATAGTGGAGTCAATAGCGATAATGCTGTGAGCTCTATGACTAGCATGTGGCCTTAA

>Glyma.17g188500.2 sequence-type=CDS polypeptide=Glyma.17g188500.2.p locus=Glyma.17g188500 ID=Glyma.17g188500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAAGCTCGATCCTTTCACCGACGAAGCTTTCCAAAACCTGTTGGGAGCCCATTGTCTGCTAATAAACCAAACGCGAGAGATAATCAAGTAAAAGGGGCCACCACCACTACAAGTGGTTCCTCACGTGAGCCATCTGATGAGGATGATGAAGCAGGTCCTTGTGAACAAAGCACAAACGCTATTGATGTGAAGCGCCTAAGAAGGAAGGTTTCTAATCGAGAGTCTGCAAGGAGGTCCAGGAGGAGAAAACAAGCCCATTTGGCTGACCTGGAGTGGCAAGTCGAACGGTTGAGACTTGAAAACGCAAACCTATTTAAGCAGCTTACAGATGCCAGCCAACAATTTCGTGAAGCTGATACAAATAATCGAGTCCTAAAATCAGATGTCGAAGCTTTGAGAGCTAAGGTGAAATTAGCTGAGGATATGATCACTCGTGGCACACTCACCCCTACCAACAACCAGATTCTTCAAAATCAGAGTCCACTAAACACCCCACCTCAACTCAACACGAATAATTTACGCCGCATGGGATATGTTTCGCCAACCTTCACCGTCCATGGGAATGATGCTACTGCTTCATATGGTGGTGGAATCACAGTTAGTGGACAAAATTCACCGCTTGGTGGGCTTGGAAACTTGGATAATATTCCATGCAGCGATTTCAATAGTGGAGTCAATAGCGATAATGCTGTGAGCTCTATGACTAGCATGTGGCCTTAA
Predicted protein sequences of Glyma.17G188500
>Glyma.17g188500.1.p sequence-type=predicted peptide transcript=Glyma.17g188500.1 locus=Glyma.17g188500 ID=Glyma.17g188500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MESKWGAAATSIIAANFDDFKWIASMFYPDVANDNVKPCKLDPFTDEAFQNLEAVTASSTCGGVTEDTLVHSQNLTPIQSTISATIDSLSSICVGSPLSANKPNARDNQVKGATTTTSGSSREPSDEDDEAGPCEQSTNAIDVKRLRRKVSNRESARRSRRRKQAHLADLEWQVERLRLENANLFKQLTDASQQFREADTNNRVLKSDVEALRAKVKLAEDMITRGTLTPTNNQILQNQSPLNTPPQLNTNNLRRMGYVSPTFTVHGNDATASYGGGITVSGQNSPLGGLGNLDNIPCSDFNSGVNSDNAVSSMTSMWP*

>Glyma.17g188500.2.p sequence-type=predicted peptide transcript=Glyma.17g188500.2 locus=Glyma.17g188500 ID=Glyma.17g188500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQARSFHRRSFPKPVGSPLSANKPNARDNQVKGATTTTSGSSREPSDEDDEAGPCEQSTNAIDVKRLRRKVSNRESARRSRRRKQAHLADLEWQVERLRLENANLFKQLTDASQQFREADTNNRVLKSDVEALRAKVKLAEDMITRGTLTPTNNQILQNQSPLNTPPQLNTNNLRRMGYVSPTFTVHGNDATASYGGGITVSGQNSPLGGLGNLDNIPCSDFNSGVNSDNAVSSMTSMWP*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo