SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.17G180400

Feature Type:gene_model
Chromosome:Gm17
Start:20487778
stop:20491962
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17G180400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G66920.1AT SKU5 similar 17 JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0009505GO-cc plant-type cell wall EnsemblGenomesN/AIEA
GO:0009506GO-cc plasmodesma EnsemblGenomesN/AIEA
GO:0005507GO-mf copper ion binding EnsemblGenomesN/AIEA
GO:0005507GO-mf copper ion binding JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0016722GO-mf oxidoreductase activity, oxidizing metal ions EnsemblGenomesN/AIEA
KOG1263 KOG Multicopper oxidases JGI N/AIEA
PTHR11709Panther MULTI-COPPER OXIDASE JGI N/AIEA
PTHR11709:SF17Panther JGI N/AIEA
PF00394PFAM Multicopper oxidase JGI N/AIEA
PF07731PFAM Multicopper oxidase JGI N/AIEA
PF07732PFAM Multicopper oxidase JGI N/AIEA
GN7V-44943SoyCyc9-rxn L-ascorbate oxidase Plant Metabolic Network ISS

Proteins Associated with Glyma.17G180400
LocusGene SymbolProtein Name
Lac67 Laccase 67

Expression Patterns of Glyma.17G180400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.17G180400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g180400 Wm82.a4.v1ISS As supplied by JGI
Glyma17g21490 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17G180400
>Glyma.17g180400.1 sequence-type=CDS polypeptide=Glyma.17g180400.1.p locus=Glyma.17g180400 ID=Glyma.17g180400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAAGCACAAGTTTGCTTCATCTATTACTTGGTGTTGTTTTGGCTCTGCTGAGTGTGTCTCTTGTGGAAGGAGAAGATGCATACAAATACTACACGTGGACTGTGACATATGGCATTCTTTCTCCACTAGGTAGTCCTCAGCAGGTGGTTCTTATCGATGGTCAGTTTCCTGGGCCTCAACTAGACTTGGTAACTAATGAAAATGTTGTTCTCAACCTTGTAAACAAGTTAGATGAGCCATTTCTTCTTACTTGGAATGGCATCAAACAAAGGAAAAACTCATGGCAAGATGGGGTATTGGGAACCAATTGCCCCATTCCTCCAAACTCAAATTACACATACAAGTTTCAGGTCAAGGATCAGATTGGAACCTACACATACTTTCCATCGACTTCACTGCATAAAGCAGCTGGAGGGTTTGGAGGACTCAATGTCTACCATAGATCTGTCATCCCAGTTCCTTATCCGTACCCTGATGGAGATTTCACTTTACTCATTGGTGATTGGTACAAGACTAACCACAAGGTATTAAGAGAATCTTTGGATTCTGGAAAATCTCTTGCCTTTCCTGATGGTCTCCTTATCAATGGCCAAGCTCATACAACCATAAATGGGGACCAGGGAAAGACCTATATGTTCAGAATCTCAAATGTGGGCATGTCAACATCAATTAACTTCAGAATCCAGGGTCATCCTCTGAAGCTAGTTGAGATTGAAGGATCACACATTGTCCAGAACACGTACGACACGCTTGATGTGCATGTTGGGCAATCAGCTGCTGTGTTGGTAACCTTAAATCAGCCTCCAAAGGACTACTACATTGTTGCCTCAACAAGATTTTCAAGAAAAGTTCTCACAGCAACTGCAGTGTTACATTATTCAAACTCTAACTCTCCTGCTTCTGGACCCTTGCCTAGTCCCCCAATTTACCAATATCATTGGTCTGTGAAGCAAGCTAGAACCTACAGATGGAATCTGACAGCAAATGCTGCTAGGCCTAATCCACAAGGGTCATACCATTATGGAAAAATAACTCCTACAAAGACAATTGTGTTGTCCAATTCAGCACCTTTGATTAATGGAAAACTTCGTTATGCTGTCAACAAGGTTTCTTATGTTAACTCTGATACACCGCTCAAGCTTGCTGATTACTTCAACATTCCTGGAATCTACAGTGTTGACTCAATCCAAACCCTTCCTTCTGAAAGTACTCCTGCATCCATAGCCACCTCCGTAGTGCCAACTTCTCTCCATGATTTCATTGAGGTTGTTTTTCAGAACAACGAAAATGCCATGCAATCTTGGCATCTTGACGGTTATGACTTTTGGGTCGTGGGTTATGGTTTTGGTCAGTGGACACCAGCCAAAAGAAGAACCTATAATCTAGTTGATGCTCTGACCAGGCACACTACACAGGTATACCCAAATGCTTGGACTACAATATTGGTGTCCTTGGACAATCAAGGTATGTGGAATCTGAGGTCTGCAATATGGGAAAGGCAGTATCTTGGGCAACAATTATATCTCAGGGTTTGGACTTCTGAGCGCAGCCTTGCTAATGAATATGATATTCCCAACAATGCATTGCTTTGTGGCAAAGCTGTTGGACATAACAACCCCTAG
Predicted protein sequences of Glyma.17G180400
>Glyma.17g180400.1.p sequence-type=predicted peptide transcript=Glyma.17g180400.1 locus=Glyma.17g180400 ID=Glyma.17g180400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGSTSLLHLLLGVVLALLSVSLVEGEDAYKYYTWTVTYGILSPLGSPQQVVLIDGQFPGPQLDLVTNENVVLNLVNKLDEPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQVKDQIGTYTYFPSTSLHKAAGGFGGLNVYHRSVIPVPYPYPDGDFTLLIGDWYKTNHKVLRESLDSGKSLAFPDGLLINGQAHTTINGDQGKTYMFRISNVGMSTSINFRIQGHPLKLVEIEGSHIVQNTYDTLDVHVGQSAAVLVTLNQPPKDYYIVASTRFSRKVLTATAVLHYSNSNSPASGPLPSPPIYQYHWSVKQARTYRWNLTANAARPNPQGSYHYGKITPTKTIVLSNSAPLINGKLRYAVNKVSYVNSDTPLKLADYFNIPGIYSVDSIQTLPSESTPASIATSVVPTSLHDFIEVVFQNNENAMQSWHLDGYDFWVVGYGFGQWTPAKRRTYNLVDALTRHTTQVYPNAWTTILVSLDNQGMWNLRSAIWERQYLGQQLYLRVWTSERSLANEYDIPNNALLCGKAVGHNNP*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo