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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G20280.1 | AT | sucrose phosphate synthase 1F | JGI | N/A | IEA |
| GO:0005985 | GO-bp | sucrose metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0005985 | GO-bp | sucrose metabolic process | JGI | N/A | IEA |
| GO:0009058 | GO-bp | biosynthetic process | JGI | N/A | IEA |
| GO:0016157 | GO-mf | sucrose synthase activity | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016757 | GO-mf | transferase activity, transferring glycosyl groups | EnsemblGenomes | N/A | IEA |
| GO:0046524 | GO-mf | sucrose-phosphate synthase activity | EnsemblGenomes | N/A | IEA |
| KOG0853 | KOG | Glycosyltransferase | JGI | N/A | IEA |
| PTHR12526 | Panther | GLYCOSYLTRANSFERASE | JGI | N/A | IEA |
| PTHR12526:SF28 | Panther | JGI | N/A | IEA | |
| PF00534 | PFAM | Glycosyl transferases group 1 | JGI | N/A | IEA |
| PF00862 | PFAM | Sucrose synthase | JGI | N/A | IEA |
| PF05116 | PFAM | Sucrose-6F-phosphate phosphohydrolase | JGI | N/A | IEA |
| PWY-7238 | SoyCyc9 | sucrose biosynthesis II | Plant Metabolic Network | ISS | |
| SUCSYN-PWY | SoyCyc9 | sucrose biosynthesis I (from photosynthesis) | Plant Metabolic Network | ISS | |
| GN7V-49679 | SoyCyc9-rxn | sucrose-phosphate synthase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| SPS1 | putative sucrose phosphate synthase 1 |
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Glyma.17G109700 not represented in the dataset |
Glyma.17G109700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.13g161600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g109700 | Wm82.a4.v1 | ISS | As supplied by JGI |
| Glyma17g11820 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.17g109700.1 sequence-type=CDS polypeptide=Glyma.17g109700.1.p locus=Glyma.17g109700 ID=Glyma.17g109700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCAGGAAACGATTGGCTGAACAGCTACCTTGAAGCGATACTTGACGTCGGGCCTGGCCTGGACGATGCCAAGTCCTCTCTGCTTCTCCGAGAGAGAGGCAGGTTCAGCCCTACTCGCTACTTCGTCGAAGAGGTTATTGGCTTCGATGAGACCGATCTCTATCGCTCTTGGGTTCGGGCTTCCTCCACCAGGAGTCCTCAGGAGAGGAACACCAGGCTGGAGAACATGTGCTGGCGAATTTGGAACCTCGCTCGCCAAAAGAAGCAGCTGGAGAGTGAGACAGCGCAGAGGGTGAACAAGCGTCGTCTGGAGCGCGAGCGAGGGCGCAGGGAAGCCACCGCGGATATGTCTGAGGACTTGTCGGAAGGAGAGAAGGGAGATCCGGTGAGTGACGTGTCGGCTCACGGCGGCGACGCCGCCAACAACCGAGCCAGGTTGCCTAGAATCAGTTCCGCTGATGCCATGGAGACTTGGGCCAACAGTCAGAAAGGGAAGAAGCTCTACATTGTACTCATCAGCATTCATGGCCTAATTCGAGGCGAGAATATGGAGCTAGGACGTGATTCTGACACGGGTGGTCAGGTTAAGTATGTTGTGGAACTTGCGAGGGCATTGGGATCAATGCCAGGAGTTTATCGGGTTGATTTGCTAACTAGACAAGTGTCGGCACCAGATGTAGATTGGAGTTATGGGGAGCCGACAGAAATGTTGTCTCCAAGAGACACAGATGATTTTGGAGATGACATGGGAGAGAGCAGTGGTTCTTATATCGTTCGTATTCCCTTTGGTCCAAGAGATAAATATATTCCAAAAGAACTTCTCTGGCCTTACATTCCTGAATTTGTTGATGGAGCACTTAACCACATTATACAGATGTCCAAGTCTCTTGGGGAACAGATTGGCAGTGGGCATGCTGTCTGGCCTGTTGCCATCCATGGACATTATGCAGATGCAGGTGACTCTGCTACTCTCCTATCTGGCGCATTAAATGTTCCAATGCTTTTTACTGGCCACTCACTTGGCCGAGACAAGTTGGAACAACTTTTAAAGCAAGGTCGACTATCAAAGGATGAAATCAACACAACTTACAAGATTATGCGCAGGATTGAAGCTGAGGAATTGGCCCTTGATGGTTCTGAAATAGTCATCACAAGCACTAAACAGGAAATAGAAGAACAATGGCGCTTGTATGATGGTTTTGATCCTGTATTGGAGCGTAAACTACGAGCAAGGATCAGGCGTAATGTGAGCTGCTATGGGAGATTCATGCCTCGCATGGCGACAATTCCTCCTGGTATGGAGTTCCATCATATTGTTCCACACGATGGCGATATAGAAGGTGAACCAGAAGGAAATTTGGATCATCCTGCCCCCCAAGATCCACCTATTTGGTCTGAGATAATGCGCTTCTTTACCAACCCTCGCAAGCCTATGATACTTGCTCTTGCTAGGCCGGACCCTAAAAAGAACATCACAACTTTGGTAAAAGCATTTGGAGAATGTCGTCCTCTTCGAGAGCTTGCCAACCTTACATTAATTATGGGCAACAGAGATGGAATTGATGAGATGTCAAGCACAAATGCTTCCGTTCTTCTCTCGGTACTTAAGCTGATTGACAAGTATGATCTGTATGGGCAAGTGGCCTATCCTAAACATCACAAACAATATGATGTTCCTGACATATATCGCCTAGCAGCAAAGACAAAGGGTGTTTTCATTAATCCAGCTTTCATTGAGCCATTTGGTCTTACCTTAATTGAGGCAGCTGCTCATGGTTTGCCAATTGTTGCTACTAAAAATGGAGGTCCTGTTGATATTCATAGGGTACTTGACAATGGTCTGCTCATAGATCCCCATGATCAGCAGTCTATTGCTGATGCTCTTTTGAAGCTTGTTAGCAACAAGCAACTTTGGGCAAAATGTAGACAGAATGGGTTAAAGAATATTCATTTATTTTCATGGCCCGAGCACTGTAAGACTTACCTTTCTAAAATAGCCACTTGTAAACCAAGGCATCCACAATGGCAGCGAAGTGAGGATGGAGGTGAAAGTTCAGAATCAGATTCACCAGGTGATTCCTTGAGAGATTTACAGGACTTGTCTCTAAATCTGAAGTTTTCATTAGATGGAGAGAAGAGTGAGGGTAGTGGAAATGACAATTCTTTGAATTCTGATGGAAATGCTGCTGATAGAGGGGCAAAACTAGAGAATGCTGTTTTGTCATGGTCAAAGGGCATCTCTAAGGACATACGCAAGGGTGGGGCTATCGAAAAAACAGATCAAAATCCAAACGCTGGTAAATTTCCTCCATTAAGGAGAAGAAAACATCTATTTGTCATTGCTGTGGATTGTGATACCACTTCAGGCCTTCTTGAAACTATTAAAGCCATCTTTGAGTCTGCTGGAAAGGATAAGGCTGAGGGCACTGTAGGTTTCATATTGTCAACATCATTAACAATATCAGAGATACAGTCCTTTCTAATCTCAGGTGGCTTGAGTCCCATTGATTTTGATGCTTATATTTGCAATAGTGGCAGTGATCTATACTATCCATCCCTCAATCCTGGAGAGCGCCCATTTGTGGTTGACTTGTATTACCACTCACACATTGAATACCGTTGGGGTGGAGAAGGGTTGAGGAAGACTTTAGTGCGATGGGCTGATTCAACCACTGATAAGAAGGGTGATAATGACGAACAAATTGTGAGTCCTGCTGAACAGCTTTCTACCGACTATTGTTATGCTTTCAAAGTGCGAAAGCCAGGAATGGCTCCCCCTGTGAAGGAGCTTCGGAAGTTATTAAGGATCCAAGCTCTACGTTGCCATCCTATATATTGTCAAAATGGGACAAGACTGAATGTAATTCCTGTGCTGGCATCTCGTTCCCAAGCTCTCAGATACCTGTATGTTCGATGGGGTTTTGAACTGTCAAAGATGGTGGTGTTCGTCGGAGAATGTGGTGACACAGATTACGAAGGACTTCTTGGTGGTCTACACAGAAGTGTCATACTGAAGGGAGTGGGAAGCAGTGCAATCAGTCAACTCCATAATAACAGAAGCTACCCTCTTTCAGATGTCATGCCATTAGACAGCCCCAACATCATCGAAGCAACTGAGGGGACTAGGGGTGCTGATATCCAGGCTTTGATCGAAAAAGTGGGATATCTCACTGGATGA
>Glyma.17g109700.1.p sequence-type=predicted peptide transcript=Glyma.17g109700.1 locus=Glyma.17g109700 ID=Glyma.17g109700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAGNDWLNSYLEAILDVGPGLDDAKSSLLLRERGRFSPTRYFVEEVIGFDETDLYRSWVRASSTRSPQERNTRLENMCWRIWNLARQKKQLESETAQRVNKRRLERERGRREATADMSEDLSEGEKGDPVSDVSAHGGDAANNRARLPRISSADAMETWANSQKGKKLYIVLISIHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWSYGEPTEMLSPRDTDDFGDDMGESSGSYIVRIPFGPRDKYIPKELLWPYIPEFVDGALNHIIQMSKSLGEQIGSGHAVWPVAIHGHYADAGDSATLLSGALNVPMLFTGHSLGRDKLEQLLKQGRLSKDEINTTYKIMRRIEAEELALDGSEIVITSTKQEIEEQWRLYDGFDPVLERKLRARIRRNVSCYGRFMPRMATIPPGMEFHHIVPHDGDIEGEPEGNLDHPAPQDPPIWSEIMRFFTNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDGIDEMSSTNASVLLSVLKLIDKYDLYGQVAYPKHHKQYDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNGLLIDPHDQQSIADALLKLVSNKQLWAKCRQNGLKNIHLFSWPEHCKTYLSKIATCKPRHPQWQRSEDGGESSESDSPGDSLRDLQDLSLNLKFSLDGEKSEGSGNDNSLNSDGNAADRGAKLENAVLSWSKGISKDIRKGGAIEKTDQNPNAGKFPPLRRRKHLFVIAVDCDTTSGLLETIKAIFESAGKDKAEGTVGFILSTSLTISEIQSFLISGGLSPIDFDAYICNSGSDLYYPSLNPGERPFVVDLYYHSHIEYRWGGEGLRKTLVRWADSTTDKKGDNDEQIVSPAEQLSTDYCYAFKVRKPGMAPPVKELRKLLRIQALRCHPIYCQNGTRLNVIPVLASRSQALRYLYVRWGFELSKMVVFVGECGDTDYEGLLGGLHRSVILKGVGSSAISQLHNNRSYPLSDVMPLDSPNIIEATEGTRGADIQALIEKVGYLTG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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