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Report for Sequence Feature Glyma.17G024300

Feature Type:gene_model
Chromosome:Gm17
Start:1774663
stop:1776421
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.17G024300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G18560.1AT Integrase-type DNA-binding superfamily protein JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0003700GO-mf sequence-specific DNA binding transcription factor activity JGI N/AIEA
PF00847PFAM AP2 domain JGI N/AIEA

Proteins Associated with Glyma.17G024300
LocusGene SymbolProtein Name
ERF132 Ethylene-responsive factor gene 132

Expression Patterns of Glyma.17G024300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.17G024300 not represented in the dataset
Glyma.17G024300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.17G024300
ParalogEvidenceComments
Glyma.07g250100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.17G024300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g024300 Wm82.a4.v1ISS As supplied by JGI
Glyma17g02711 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.17G024300
>Glyma.17g024300.1 sequence-type=CDS polypeptide=Glyma.17g024300.1.p locus=Glyma.17g024300 ID=Glyma.17g024300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAACCTCGAGAACCTCATCAGATACAGCCTTCAAAGGATATGACCCGAGCCAAACTCAAATGTGTCTGTCTCTCCTTCAACGCAACACATCTCCTTGTGGTGAGAGAAGAGGTAGAAGGAAGCAAGCAGAACCAGGGAGGTTCCTTGGTGTTAGGAGGCGCCCTTGGGGTCGATATGCTGCTGAAATTAGAGACCCCACAACCAAAGAGAGGCATTGGCTTGGCACATTTGACACTGCTCAAGAAGCAGCTCTTGCTTATGACAGAGCTGCTCTGTCCATGAAAGGAAGCCAAGCTAGAACCAACTTTGTTTACTCTGACAACATCAACTTCCACACTCTCCAGCTTTCTCCTATGAATGTTCAAGTTCAACCTCTCTTGCCAGCTTCACAGACGTTCTTCACCAACACCACCACCACCACCACTCAGACCAAAACACCAACCAACCAAAATAGCCTCTCTCAGATTATTCACAGTGCTTCAAACTGTGGAAACCCCTCCCCATTGAACAATGACATGTGTGTTGAAACCACATATGGGTCAGCTCAGGATGACAATTTCTTCTTTTCTAGTGATTCTAACTCGGGCTATCTGGAATGCATAGTTCCTGATAACTGCTTCAGACCTGCTTCATCCAGTTCCAACAGTTCAAACTCCAGAAAGAGCAATGTGAATGATCAAAAGACTAACACAAGCTCCATGGAGAGTACTAATCATCATCATCATCATCAGTTCTCACATGTTGATCACATGACTTCGTTCTCTCAAGAAGAAGGCATTAATGAAATGGCACCAAGGGCCTCTTATAACTTATCAGATTTTTGTTATCAAAGTGAAGTGAGTCAAGGATCATGGGATTGGAATTGCAGTGAACTTTCAGCTATATTTAAGAACCCAATGAGGGTGGAAAATGGGTGCATGGATGATGCATTGTACCCAATAAATGATAGTCCTACTAGTCCAAGCTATGGGCTAATGAATGAGGCTGGTTCTTCTTCTACAACCTGTTCTCCATCACTTCCACCCTTTGGGGACGTAGACTTGGGATACCCACTCTTCTGA
Predicted protein sequences of Glyma.17G024300
>Glyma.17g024300.1.p sequence-type=predicted peptide transcript=Glyma.17g024300.1 locus=Glyma.17g024300 ID=Glyma.17g024300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSTSRTSSDTAFKGYDPSQTQMCLSLLQRNTSPCGERRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGSQARTNFVYSDNINFHTLQLSPMNVQVQPLLPASQTFFTNTTTTTTQTKTPTNQNSLSQIIHSASNCGNPSPLNNDMCVETTYGSAQDDNFFFSSDSNSGYLECIVPDNCFRPASSSSNSSNSRKSNVNDQKTNTSSMESTNHHHHHQFSHVDHMTSFSQEEGINEMAPRASYNLSDFCYQSEVSQGSWDWNCSELSAIFKNPMRVENGCMDDALYPINDSPTSPSYGLMNEAGSSSTTCSPSLPPFGDVDLGYPLF*






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