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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G34130.1 | AT | staurosporin and temperature sensitive 3-like b | JGI | N/A | IEA |
| GO:0006486 | GO-bp | protein glycosylation | EnsemblGenomes | N/A | IEA |
| GO:0006486 | GO-bp | protein glycosylation | JGI | N/A | IEA |
| GO:0018279 | GO-bp | protein N-linked glycosylation via asparagine | EnsemblGenomes | N/A | IEA |
| GO:0043687 | GO-bp | post-translational protein modification | EnsemblGenomes | N/A | IEA |
| GO:0008250 | GO-cc | oligosaccharyltransferase complex | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | JGI | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0004576 | GO-mf | oligosaccharyl transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0004576 | GO-mf | oligosaccharyl transferase activity | JGI | N/A | IEA |
| GO:0004579 | GO-mf | dolichyl-diphosphooligosaccharide-protein glycotransferase activity | EnsemblGenomes | N/A | IEA |
| KOG2292 | KOG | Oligosaccharyltransferase, STT3 subunit | JGI | N/A | IEA |
| PTHR13872 | Panther | 60S RIBOSOMAL PROTEIN L35 | JGI | N/A | IEA |
| PF02516 | PFAM | Oligosaccharyl transferase STT3 subunit | JGI | N/A | IEA |
| GN7V-67477 | SoyCyc9-rxn | Dolichyl-diphosphooligosaccharide--protein glycotransferase | Plant Metabolic Network | ISS |
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Glyma.16g213300 not represented in the dataset |
Glyma.16g213300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.09g165000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma16g33881 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.16g213300.1 sequence-type=CDS polypeptide=Glyma.16g213300.1.p locus=Glyma.16g213300 ID=Glyma.16g213300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTCGTCACCACCACCAAATCCTCTCCAATGGCGCAAGATCTCAAAACCTCCATGAGCTCCTTCACTCTCCCCAAAACCCTAAAGCTCAAAACGAAGCAACAAGAGCTTCTGATCCGCGTCGCCACGCTCTCCCTCATCTACGTCCTCGCCTTCATCACGCGCCTCTTCAGCGTTCTCCGCTACGAGTCCATGATCCACGAGTTCGACCCCTACTTCAACTACCGCACCACGCTCTTCCTCACACGCAACGGCTTCGCCGAGTTCTGGAACTGGTTCGACTCGGAGTCATGGTACCCGCTCGGCCGCATTATCGGCGGCACCCTCTACCCCGGCCTCATGCTCACCGCCGCCGCCATCCACTCCCTCCTCCGCTTCCTCCGCCTCTTCGTCCACATCCGCGAGGTCTGCGTCCTCACCGCGCCCTTCTTCGCCTCCAACACCACCCTCGTCGCTTACTTCTTCGCGAAAGAGGTCTGGGACTCCGGCGCCGGCATCGTCGCCGCCGCGCTCATCGCGATCTGCCCCGGCTACATCTCCCGCTCCGTCGCCGGATCCTACGACAACGAGGGCGTCGCGATCTTCGCGCTGCTGCTGACTTTTTACCTCTTTGTGAAGGCGGTGAACACTGGGTCATTGGCGTGGGCCCTGGGCTCGGCGTTCGGGTACTTCTACATGGTGTCGGCGTGGGGGGGTTATGTGTTTATAATCAACTTGGTGCCGCTTTATGTGCTGGTGCTGCTTGTGACGGGAAGGTACTCGCTGAGGCTGTATGTGGCGTATAACTGCATGTATGTGTTGGGGATGCTGCTCGCCATGCAGATTAGGTTTGTGGGGTTCCAGCATGTACAGTCCGGGGAGCACATGGCGGCTATGGGCGTTTTTTTCTTGCTTCAGGTGTTTTTCTTCTTGGATTGGGTGAGGCATTTGCTTAGTGACACCAAGTTGTTTCAGGCATTTCTGAGGATCACTGTGACTAGTGCGGTTGCTGTTGGTGCTGTTGCTTTGGGAGTGGGCACAGCGTCTGGTTATATATCTCCATGGACTGGGAGGTTTTACTCCTTGCTTGATCCAACATATGCTAAGGATCACATTCCAATTATTGCATCTGTCTCTGAGCATCAGCCAACTGCTTGGTCGTCCTTCATGTTTGATTTCCACATCTTGCTGTTCCTTTTCCCTGCTGGCCTCTATTTTTGCTTCAAGCGTTTGTCTGATGCCACAATCTTTTTAGTAATGTATGGTCTTACAAGCATGTATTTTGCTGGGGTTATGGTTCGGTTGATTCTTGTGGCTACCCCTGCTGTGTGCCTCATTAGTGCTATAGCGGTTTCTGCCACTGTGAAGAATTTGGCTCGGGTAGTGAGGGCCAAAAGCCCAGCTGTTCAAAGTGGATCTACTAAAGGAACTAACTCTGCAAAAAGCTCTTCCAAGGGTGTAGTTGACAACTCCCAGCCTTTCCAAAAGAATGGTGCTATTGTGTTACTCCTTGGTGCTTTCTATTTGCTCAGTAGATATGTCATTCACTGCACTTGGGTCACATCAGAGGCTTACTCATCTCCCTCAATTGTCTTGGCTGCGAGGGGTGCCCATGGCAACAGGGTCATCTTTGATGATTATCGTGAAGCTTACTTTTGGCTTCGCCAGAACACTCCACCAGATGCGAAGGTGATGTCATGGTGGGATTATGGTTATCAAATCACTGCCATGGGAAACAGAACAGTTATTGTTGACAATAACACCTGGAATAACACACACATAGCCACTGTTGGGCGAGCAATGTCATCCTATGAGGATGAGGCTTATGAGATAATGAGATCACTTGATGTTGACTATGTATTAGTCGTGTTTGGTGGTGTTACTGGTTATTCTTCTGATGATATTAACAAATTTCTCTGGATGGTGAGAATTGGTGGTGGAGTTTTTCCTGTGATAAAGGAGCCTGATTACCTTGTCAATGGAGAGTATCGTGTAGATAAAGGAGCAGCTCCAAAGATGTTGAACTGTCTTATGTACAAGCTGTCCTATTATCGGTTTGGGGAGCTGACAACAGAATATGGCAAACCACCTGGGTATGATCGTGCTAGAGGTGTTGAAATTGGAAATAAGGACATAAAGCTTGAGTACTTGGAAGAGGCGTTCACTACACAGAATTGGATAGTTCGTATTTATAAAGTGAAACCCCCTAAAAACAGGTGGTAA
>Glyma.16g213300.1.p sequence-type=predicted peptide transcript=Glyma.16g213300.1 locus=Glyma.16g213300 ID=Glyma.16g213300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVVTTTKSSPMAQDLKTSMSSFTLPKTLKLKTKQQELLIRVATLSLIYVLAFITRLFSVLRYESMIHEFDPYFNYRTTLFLTRNGFAEFWNWFDSESWYPLGRIIGGTLYPGLMLTAAAIHSLLRFLRLFVHIREVCVLTAPFFASNTTLVAYFFAKEVWDSGAGIVAAALIAICPGYISRSVAGSYDNEGVAIFALLLTFYLFVKAVNTGSLAWALGSAFGYFYMVSAWGGYVFIINLVPLYVLVLLVTGRYSLRLYVAYNCMYVLGMLLAMQIRFVGFQHVQSGEHMAAMGVFFLLQVFFFLDWVRHLLSDTKLFQAFLRITVTSAVAVGAVALGVGTASGYISPWTGRFYSLLDPTYAKDHIPIIASVSEHQPTAWSSFMFDFHILLFLFPAGLYFCFKRLSDATIFLVMYGLTSMYFAGVMVRLILVATPAVCLISAIAVSATVKNLARVVRAKSPAVQSGSTKGTNSAKSSSKGVVDNSQPFQKNGAIVLLLGAFYLLSRYVIHCTWVTSEAYSSPSIVLAARGAHGNRVIFDDYREAYFWLRQNTPPDAKVMSWWDYGYQITAMGNRTVIVDNNTWNNTHIATVGRAMSSYEDEAYEIMRSLDVDYVLVVFGGVTGYSSDDINKFLWMVRIGGGVFPVIKEPDYLVNGEYRVDKGAAPKMLNCLMYKLSYYRFGELTTEYGKPPGYDRARGVEIGNKDIKLEYLEEAFTTQNWIVRIYKVKPPKNRW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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