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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma.16g208600

Feature Type:gene_model
Chromosome:Gm16
Start:36810473
stop:36813869
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.16g208600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G55620.1AT Translation initiation factor IF6 JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006413GO-bp translational initiation EnsemblGenomesN/AIEA
GO:0042254GO-bp ribosome biogenesis EnsemblGenomesN/AIEA
GO:0042256GO-bp mature ribosome assembly EnsemblGenomesN/AIEA
GO:0042256GO-bp mature ribosome assembly JGI N/AIEA
GO:0042273GO-bp ribosomal large subunit biogenesis EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005730GO-cc nucleolus EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0003743GO-mf translation initiation factor activity EnsemblGenomesN/AIEA
GO:0043022GO-mf ribosome binding EnsemblGenomesN/AIEA
GO:0043022GO-mf ribosome binding JGI N/AIEA
GO:0043023GO-mf ribosomal large subunit binding EnsemblGenomesN/AIEA
KOG3185 KOG Translation initiation factor 6 (eIF-6) JGI N/AIEA
PTHR10784Panther EUKARYOTIC TRANSLATION INITIATION FACTOR 6 JGI N/AIEA
PF01912PFAM eIF-6 family JGI N/AIEA

Expression Patterns of Glyma.16g208600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.16g208600 not represented in the dataset
Glyma.16g208600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.16g208600
ParalogEvidenceComments
Glyma.09g158100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.16g208600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma16g33370 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.16g208600
>Glyma.16g208600.2 sequence-type=transcript locus=Glyma.16g208600 ID=Glyma.16g208600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACGGTACAGTCAAGTACAAAACGCAATACCCTAATTTGTTtctctgtctctgtctctgtctctctctcCATTCGTGCTTTCAGCTCCGGCAACCTCTCTTCCGGCGCCGCCGCTATCTCGGCCGCGCACCAATCTTCAATTTGATTACTTGGGTCAACGATTTCTGTCATTCTCAATCATGGCAACTAGACTTCAGTTTGAAAATAATTGTGAAGTTGGAGTCTTCTCTAAACTTACCAATGCCTACTGTTTGGTTGCCATTGGTGGTTCTGAAAGCTTCTACAGTGTATTTGAAGCCGAGTTAGCAGGTGTTATCCCTGTGGTCAAGACATCCATTGGCGGTACTCGTATTATTGGTCGTCTTTGTGCTGGTAACAAGAATGGGCTTCTCTTGCCCCATACCACCACAGACCAAGAACTTCAACATTTGAGAAACAGTCTACCTGATCAAGTTGTTGTTCAGCGAATAGACGAAAGGTTATCTGCTCTGGGAAATTGTATAGCATGTAATGACCATGTGGCCCTCACACACACTGATCTTGACAGGGAGACTGAAGAGATGATTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAGACCATTGCTGGCAATATTCTTGTTGGTAGTTACTGTGCCTTCTCCAATAGAGGTGGCTTGGTTCACCCTCATACTTCCATAGAAGACTTGGATGAACTTTCTACACTTCTTCAGGTTCCTTTGGTGGCTGGGACCGTGAACCGGGGTAGTGAAGTAATAGCAGCTGGAATGACAGTTAATGATTGGACTGCATTTTGTGGTTCCGACACCACAGCAACAGAGCTATCTGTAATCGAGAGTGTTTTCAAGCTGAGAGAAGCGCAGCCTAGCGCAATTGTGGATGAGATGAGGAAATCTCTCATTGATACCTATGTCTGAACTGTGGTAGTAATAGTGTTTTGTTTTATGCAAGATATTGCACTGCTCATTGTTGAGATCTTCTAAGTTAAGTTTTGGTGATAGTTTCTGTTGTTGTGTGGGCATATATGTTCCCATCATGTTGTGCTCTTTTCCTTAGTTGTGATATCGTATAATATCAGGTGCTGATTTTTGTTACCAACAAATCAAATGCATGTAAGGGTGCTCTTGCGTTCCACTCATGGTGACGGCCTAAATAATAGCCTTAGGTTGATTCGAAGCAATCAAATTTTGTCACGTTAAGAAAAATTTCTTACATTTCTTGATGTATAAATTCTGCATTTTTTAACTCTTTGAAAGAAAGAAAAAAAAACTGTTTAAA

>Glyma.16g208600.3 sequence-type=transcript locus=Glyma.16g208600 ID=Glyma.16g208600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAGTACAAAACGCAATACCCTAATTTGTTtctctgtctctgtctctgtctctctctcCATTCGTGCTTTCAGCTCCGGCAACCTCTCTTCCGGCGCCGCCGCTATCTCGGCCGCGCACCAGTTATTCTTCTCTTCATATCTTCAATTTGATTACTTGGGTCAACGATTTCTGTCATTCTCAATCATGGCAACTAGACTTCAGTTTGAAAATAATTGTGAAGTTGGAGTCTTCTCTAAACTTACCAATGCCTACTGTTTGGTTGCCATTGGTGGTTCTGAAAGCTTCTACAGTGTATTTGAAGCCGAGTTAGCAGGTGTTATCCCTGTGGTCAAGACATCCATTGGCGGTACTCGTATTATTGGTCGTCTTTGTGCTGGTAACAAGAATGGGCTTCTCTTGCCCCATACCACCACAGACCAAGAACTTCAACATTTGAGAAACAGTCTACCTGATCAAGTTGTTGTTCAGCGAATAGACGAAAGGTTATCTGCTCTGGGAAATTGTATAGCATGTAATGACCATGTGGCCCTCACACACACTGATCTTGACAGGGAGACTGAAGAGATGATTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAGACCATTGCTGGCAATATTCTTGTTGGTAGTTACTGTGCCTTCTCCAATAGAGGTGGCTTGGTTCACCCTCATACTTCCATAGAAGACTTGGATGAACTTTCTACACTTCTTCAGGTTCCTTTGGTGGCTGGGACCGTGAACCGGGGTAGTGAAGTAATAGCAGCTGGAATGACAGTTAATGATTGGACTGCATTTTGTGGTTCCGACACCACAGCAACAGAGCTATCTGTAATCGAGAGTGTTTTCAAGCTGAGAGAAGCGCAGCCTAGCGCAATTGTGGATGAGATGAGGAAATCTCTCATTGATACCTATGTCTGAACTGTGGTAGTAATAGTGTTTTGTTTTATGCAAGATATTGCACTGCTCATTGTTGAGATCTTCTAAGTTAAGTTTTGGTGATAGTTTCTGTTGTTGTGTGGGCATATATGTTCCCATCATGTTGTGCTCTTTTCCTTAGTTGTGATATCGTATAATATCAGGTGCTGATTTTTGTTACCAACAAATCAAATGCATGTAAGGGTGCTCTTGCGTTCCACTCATGGTGACGGCCTAAATAATAGCCTTAGGTTGATTCGAAGCAATCAAATTTTGTCACGTTAAGAAAAATTTCTTACATTTCTTGATGTATAAATTCTGCATTTTTTAACTCTTTGAAAGAAAGAAAAAAAAACTGTTTAAA
Coding sequences of Glyma.16g208600
>Glyma.16g208600.1 sequence-type=CDS polypeptide=Glyma.16g208600.1.p locus=Glyma.16g208600 ID=Glyma.16g208600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAACTAGACTTCAGTTTGAAAATAATTGTGAAGTTGGAGTCTTCTCTAAACTTACCAATGCCTACTGTTTGGTTGCCATTGGTGGTTCTGAAAGCTTCTACAGTGTATTTGAAGCCGAGTTAGCAGGTGTTATCCCTGTGGTCAAGACATCCATTGGCGGTACTCGTATTATTGGTCGTCTTTGTGCTGGTAACAAGAATGGGCTTCTCTTGCCCCATACCACCACAGACCAAGAACTTCAACATTTGAGAAACAGTCTACCTGATCAAGTTGTTGTTCAGCGAATAGACGAAAGGTTATCTGCTCTGGGAAATTGTATAGCATGTAATGACCATGTGGCCCTCACACACACTGATCTTGACAGGGAGACTGAAGAGATGATTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAGACCATTGCTGGCAATATTCTTGTTGGTAGTTACTGTGCCTTCTCCAATAGAGGTGGCTTGGTTCACCCTCATACTTCCATAGAAGACTTGGATGAACTTTCTACACTTCTTCAGGTTCCTTTGGTGGCTGGGACCGTGAACCGGGGTAGTGAAGTAATAGCAGCTGGAATGACAGTTAATGATTGGACTGCATTTTGTGGTTCCGACACCACAGCAACAGAGCTATCTGTAATCGAGAGTGTTTTCAAGCTGAGAGAAGCGCAGCCTAGCGCAATTGTGGATGAGATGAGGAAATCTCTCATTGATACCTATGTCTGA

>Glyma.16g208600.2 sequence-type=CDS polypeptide=Glyma.16g208600.2.p locus=Glyma.16g208600 ID=Glyma.16g208600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAACTAGACTTCAGTTTGAAAATAATTGTGAAGTTGGAGTCTTCTCTAAACTTACCAATGCCTACTGTTTGGTTGCCATTGGTGGTTCTGAAAGCTTCTACAGTGTATTTGAAGCCGAGTTAGCAGGTGTTATCCCTGTGGTCAAGACATCCATTGGCGGTACTCGTATTATTGGTCGTCTTTGTGCTGGTAACAAGAATGGGCTTCTCTTGCCCCATACCACCACAGACCAAGAACTTCAACATTTGAGAAACAGTCTACCTGATCAAGTTGTTGTTCAGCGAATAGACGAAAGGTTATCTGCTCTGGGAAATTGTATAGCATGTAATGACCATGTGGCCCTCACACACACTGATCTTGACAGGGAGACTGAAGAGATGATTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAGACCATTGCTGGCAATATTCTTGTTGGTAGTTACTGTGCCTTCTCCAATAGAGGTGGCTTGGTTCACCCTCATACTTCCATAGAAGACTTGGATGAACTTTCTACACTTCTTCAGGTTCCTTTGGTGGCTGGGACCGTGAACCGGGGTAGTGAAGTAATAGCAGCTGGAATGACAGTTAATGATTGGACTGCATTTTGTGGTTCCGACACCACAGCAACAGAGCTATCTGTAATCGAGAGTGTTTTCAAGCTGAGAGAAGCGCAGCCTAGCGCAATTGTGGATGAGATGAGGAAATCTCTCATTGATACCTATGTCTGA

>Glyma.16g208600.3 sequence-type=CDS polypeptide=Glyma.16g208600.3.p locus=Glyma.16g208600 ID=Glyma.16g208600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAACTAGACTTCAGTTTGAAAATAATTGTGAAGTTGGAGTCTTCTCTAAACTTACCAATGCCTACTGTTTGGTTGCCATTGGTGGTTCTGAAAGCTTCTACAGTGTATTTGAAGCCGAGTTAGCAGGTGTTATCCCTGTGGTCAAGACATCCATTGGCGGTACTCGTATTATTGGTCGTCTTTGTGCTGGTAACAAGAATGGGCTTCTCTTGCCCCATACCACCACAGACCAAGAACTTCAACATTTGAGAAACAGTCTACCTGATCAAGTTGTTGTTCAGCGAATAGACGAAAGGTTATCTGCTCTGGGAAATTGTATAGCATGTAATGACCATGTGGCCCTCACACACACTGATCTTGACAGGGAGACTGAAGAGATGATTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAGACCATTGCTGGCAATATTCTTGTTGGTAGTTACTGTGCCTTCTCCAATAGAGGTGGCTTGGTTCACCCTCATACTTCCATAGAAGACTTGGATGAACTTTCTACACTTCTTCAGGTTCCTTTGGTGGCTGGGACCGTGAACCGGGGTAGTGAAGTAATAGCAGCTGGAATGACAGTTAATGATTGGACTGCATTTTGTGGTTCCGACACCACAGCAACAGAGCTATCTGTAATCGAGAGTGTTTTCAAGCTGAGAGAAGCGCAGCCTAGCGCAATTGTGGATGAGATGAGGAAATCTCTCATTGATACCTATGTCTGA
Predicted protein sequences of Glyma.16g208600
>Glyma.16g208600.1.p sequence-type=predicted peptide transcript=Glyma.16g208600.1 locus=Glyma.16g208600 ID=Glyma.16g208600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATRLQFENNCEVGVFSKLTNAYCLVAIGGSESFYSVFEAELAGVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLIDTYV*

>Glyma.16g208600.2.p sequence-type=predicted peptide transcript=Glyma.16g208600.2 locus=Glyma.16g208600 ID=Glyma.16g208600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATRLQFENNCEVGVFSKLTNAYCLVAIGGSESFYSVFEAELAGVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLIDTYV*

>Glyma.16g208600.3.p sequence-type=predicted peptide transcript=Glyma.16g208600.3 locus=Glyma.16g208600 ID=Glyma.16g208600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATRLQFENNCEVGVFSKLTNAYCLVAIGGSESFYSVFEAELAGVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLIDTYV*






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