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Report for Sequence Feature Glyma.16g203200

Feature Type:gene_model
Chromosome:Gm16
Start:36419277
stop:36431786
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.16g203200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G51710.2AT K+ efflux antiporter 5 JGI N/AIEA
GO:0006812GO-bp cation transport EnsemblGenomesN/AIEA
GO:0006812GO-bp cation transport JGI N/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport JGI N/AIEA
GO:1902600GO-bp proton transmembrane transport EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0015299GO-mf solute:proton antiporter activity EnsemblGenomesN/AIEA
GO:0015299GO-mf solute:hydrogen antiporter activity JGI N/AIEA
KOG1650 KOG Predicted K+/H+-antiporter JGI N/AIEA
PTHR16254Panther POTASSIUM/PROTON ANTIPORTER-RELATED JGI N/AIEA
PF00999PFAM Sodium/hydrogen exchanger family JGI N/AIEA

Expression Patterns of Glyma.16g203200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.16g203200 not represented in the dataset
Glyma.16g203200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.16g203200
ParalogEvidenceComments
Glyma.09g152300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.16g203200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma16g32821 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.16g203200
>Glyma.16g203200.1 sequence-type=CDS polypeptide=Glyma.16g203200.1.p locus=Glyma.16g203200 ID=Glyma.16g203200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGACGGCGATTCTGGCCACGAAGAAACGGCGCGCGTTTGGGCTCTGGTGCTGCGTTTTGTGCCTCGCGATCTGCGCTAGGGTTTGCGGCGCGGCCAGATCCGACCAGGAAACGCGGGAGAGGTTCTACGGGAACATGCCCAATGGCTCGTCGCCCGAATCCAACAACACCTTGGCCAAGATGTTCGATCGCGTTCTCGAGAAGGAGTTCTCCGAGAATGACCAACCCGAAGAACCTGACAAAAACAGCTTCAATAGCAGTGTAGCTGATCAGCAGGCTGTATTGGAGACTGTAGCTAAAATTACTCATGATAAAGCAAAGAGAAATGAAACACATGAGGGAAATGCCACAAGAGCATTTCAGTTTCAAGATGTGTTCTCACTGGAAAATGAAGATTCTGATGATGTGACAACTTTGATTGACAAAAAGGACAATGTCTTTGTGATGTCAAACAAGAAATCCAAATATCCTGTGCTTCAAGTGGATTTGAGGCTAATATCGGATTTGGTGGTTGTCATAGTTTCTGCAGCCATTGGTGGAATTGTCTTTTCCTGTTTGGGGCAACCGGTTATTGTGGGCTATCTTCTTGCAGGCTCCCTTATTGGACCAGGCGGTTTGAAGTTCATAAGTGAAATGGTGCAGGTTGAAACTGTTGCACAATTTGGTGTAGTGTTTCTTCTCTTTGCTTTGGGGCTGGAGTTTTCCCTGGCAAAGTTAAAAGCTGTGGGACCTGTTGCTGTTCTTGGAGGGCTACTTCAAATTATCATTTTTATGTTCATGTGTGGCATTCTTTCCATGTTATTTGGAGCCAAATTGTCTGAGGGTGTTTTTGTCGGTTCCTTTCTGTCAATGTCATCTACAGCAGTGGTGGTGAAGTTTTTGGTGGAGCGGAATAGTAATAATGCTCTTCATGTTCAAGTTACAATTGGGACTCTTATTTTTCAGGATTGTGCAGTGGGTTTACTATTTGCTTTGCTCCCAGTTTTGGGTGGTAACAGTGGCCTTTTACAAGGACTAATGTCAATGGGAAAACTGTTGCTAGTGTTGTCTTTGTATATCACTGCTACATCTGTATTGTCTTGGACATTTGTTCCTCGCTTTCTTAAACTGATGATGCGGCTGTCATCTCAGACAAATGAACTTTATCAGCTAGCTGCTGTTGCTTTCTGCTTGTTATCAGCATGGTGCAGTGATAAGCTTGGCCTTAGTCTTGAGTTGGGTTCGTTTATGGCTGGTGTTATGATTTCCACAACAGACTTTGCTCAACATACTTTGGACCAGGTGGAACCAATTCGTAACCTATTTGCAGCTCTCTTTCTCTCAAGTATTGGAATGCTCATACATGTGCACTTCCTTTGGAACCATGTGGATATTTTGTTGGCATCTGTTATTCTGGTTGTAGTTGTTAAAACTGCTGTTGCTGTTATAGTTACAAAGGCCTTCGGATATAGCCTTAAGACATCATTTATTGTTGGTATCTCACTTGCTCAAATTGGAGAATTTGCTTTTGTCCTCCTGAGTCGTGCTTCAAATCTTCACCTTGTTGAGGGGAAAATGTATCTTCTTCTTCTGGGGACAACGGCTCTCAGTCTGGTTACAACTCCACTTTTGTTTAAATTGATTCCTGCTGTCATGAATCTGGGTGTTCTCATGCACTGGTTCCCCAATGAAAGTAGCACACAAATTGAGGGAAAAACTTCAGTGATTGAAGCAAACAGAATGTTGTGA
Predicted protein sequences of Glyma.16g203200
>Glyma.16g203200.1.p sequence-type=predicted peptide transcript=Glyma.16g203200.1 locus=Glyma.16g203200 ID=Glyma.16g203200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKTAILATKKRRAFGLWCCVLCLAICARVCGAARSDQETRERFYGNMPNGSSPESNNTLAKMFDRVLEKEFSENDQPEEPDKNSFNSSVADQQAVLETVAKITHDKAKRNETHEGNATRAFQFQDVFSLENEDSDDVTTLIDKKDNVFVMSNKKSKYPVLQVDLRLISDLVVVIVSAAIGGIVFSCLGQPVIVGYLLAGSLIGPGGLKFISEMVQVETVAQFGVVFLLFALGLEFSLAKLKAVGPVAVLGGLLQIIIFMFMCGILSMLFGAKLSEGVFVGSFLSMSSTAVVVKFLVERNSNNALHVQVTIGTLIFQDCAVGLLFALLPVLGGNSGLLQGLMSMGKLLLVLSLYITATSVLSWTFVPRFLKLMMRLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAQHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVVVVKTAVAVIVTKAFGYSLKTSFIVGISLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPAVMNLGVLMHWFPNESSTQIEGKTSVIEANRML*






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