Glyma.16g202700

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Report for Sequence Feature Glyma.16g202700

Feature Type:	gene_model
Chromosome:	Gm16
Start:	36400757
stop:	36403044
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.16g202700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G31817.1	AT	Ribosomal L18p/L5e family protein	JGI	N/A	IEA
GO:0000028	GO-bp	ribosomal small subunit assembly	EnsemblGenomes	N/A	IEA
GO:0000462	GO-bp	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	EnsemblGenomes	N/A	IEA
GO:0006412	GO-bp	translation	EnsemblGenomes	N/A	IEA
GO:0006412	GO-bp	translation	JGI	N/A	IEA
GO:0005763	GO-cc	mitochondrial small ribosomal subunit	EnsemblGenomes	N/A	IEA
GO:0005840	GO-cc	ribosome	EnsemblGenomes	N/A	IEA
GO:0005840	GO-cc	ribosome	JGI	N/A	IEA
GO:0003735	GO-mf	structural constituent of ribosome	EnsemblGenomes	N/A	IEA
GO:0003735	GO-mf	structural constituent of ribosome	JGI	N/A	IEA
GO:0048027	GO-mf	mRNA 5'-UTR binding	EnsemblGenomes	N/A	IEA
GO:0070181	GO-mf	small ribosomal subunit rRNA binding	EnsemblGenomes	N/A	IEA
KOG0407	KOG	40S ribosomal protein S14	JGI	N/A	IEA
PTHR11759	Panther	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	JGI	N/A	IEA
PTHR11759:SF2	Panther		JGI	N/A	IEA
PF00411	PFAM	Ribosomal protein S11	JGI	N/A	IEA

Expression Patterns of Glyma.16g202700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.16g202700 not represented in the dataset	Glyma.16g202700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.16g202700

Paralog	Evidence	Comments
Glyma.09g152000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.16g202700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma16g32760	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.16g202700

Limit To All Plant Sequences

>Glyma.16g202700.2 sequence-type=transcript locus=Glyma.16g202700 ID=Glyma.16g202700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAGCTAAGAAGCGAAACACAGTGTCAGAATCTGAGTTCTTTGAACTCAAACCCTAAAAAAAACGATGTATCGTTTTTTGTCTTCCATTCGCCATGGCTGTGGATCTTCCCTCACATCACTTCTCGCGCCGAAACCCACCCTTCCATTCGACGCCGCCCTACGATCTCGCCGTTTACCTCAAAACGACGGACATGTTAGAGGATTTTCAAGCTCGAATTTTGATTGGAGGAATCTTATTGTGAACGAGAATGTGAATGCAGATGATTCTATGCAGGATGCAGAGAACAGAAACTCCGAAAAGTGGAATAATATGAGGCTGAATATGAATGCAGATGCAAAAGCTCCTCCAAATTTTGTGCAGAATAGAGGGAACATAAACTCCAGAAGCTGGAACAATATGCGACAGAATTTGAATGCTCCTCCAAATTTTATGGGGAATAGAGAGAACATAAACTCCAGAAGCCAGAATAATCTGGGCCAGAATGTGGATGCAAATGCAGATGCTCTTCCAGATTTTATGCAAGATAAAGAGAACATAAACATCGGAAGCAAGAATGATGCTGAGACTGGCTGGAACTCTAGGCCTATGGACTTTGTAAGAGGAATTATAGATGAAGATAATTTTATGAAGGGTTCTCCCTTTCATCAGTATCAATATGAGCAGGATGCTGATTTTGTTCATATAAAGATGTTGCGTAATAATACCTTTGTTACTGTAACAGATTCTCAAGGAAATATAAAACTCAGTGGCTCTGCTGGTCCATTGAAAGACCTGAAATCAGGGCAAAAGCTTTCTAGGTATGCAGCCGAGGCAACTGCGGAAGTTGTTGGCCGAAAGGCTAGGGGTTTGGGATTGAAATCTGTTGTCATGAAAGTGAATGGATTTACTCATTTTAGGAGAAAAAGGAATGCAATAATGAGCTGGAAGGAGGGCTTTACTGCTGGTTCTCGAGGGGATAGAAATCCAATTGTATACATTGAAGATACTACAAGAAAACCCCATAATGGTTGCAGACTCCCAAAGAAACGACGAATTTAGGTGTTTGCAATTGAGGTGGTTGAAGAAAGCATTATTTAACTGGGATGAAGACACAATTTAGGTGCTGTTTTGGGCACATGATGATATTTTTGTTTAGCACATTTCATTATGATTCTAGTTGTTACTTGTAGACTGCGTTTTCTGCCTCTTGTTTACAGTTTGTACAATTTTGAAGATTCAATAACCAGAATTTTCTGTAACAGTATGTACTGAATCACTATTCTCAACTGAATGGGGCTCATACTTGTTCTTGTGTTACTGTTGACCACGGCTCCCAAACTCAATATTT

Coding sequences of Glyma.16g202700

Limit To All Plant Sequences

>Glyma.16g202700.1 sequence-type=CDS polypeptide=Glyma.16g202700.1.p locus=Glyma.16g202700 ID=Glyma.16g202700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGTGGATCTTCCCTCACATCACTTCTCGCGCCGAAACCCACCCTTCCATTCGACGCCGCCCTACGATCTCGCCGTTTACCTCAAAACGACGAACCAAGGTTTTCAAAAACAGCCGGTGACTTTTTGGGGACTCCGTGACCGCAATTGTGGCCGCATCGTTTCTGAAAGACATGTTAGAGGATTTTCAAGCTCGAATTTTGATTGGAGGAATCTTATTGTGAACGAGAATGTGAATGCAGATGATTCTATGCAGGATGCAGAGAACAGAAACTCCGAAAAGTGGAATAATATGAGGCTGAATATGAATGCAGATGCAAAAGCTCCTCCAAATTTTGTGCAGAATAGAGGGAACATAAACTCCAGAAGCTGGAACAATATGCGACAGAATTTGAATGCTCCTCCAAATTTTATGGGGAATAGAGAGAACATAAACTCCAGAAGCCAGAATAATCTGGGCCAGAATGTGGATGCAAATGCAGATGCTCTTCCAGATTTTATGCAAGATAAAGAGAACATAAACATCGGAAGCAAGAATGATGCTGAGACTGGCTGGAACTCTAGGCCTATGGACTTTGTAAGAGGAATTATAGATGAAGATAATTTTATGAAGGGTTCTCCCTTTCATCAGTATCAATATGAGCAGGATGCTGATTTTGTTCATATAAAGATGTTGCGTAATAATACCTTTGTTACTGTAACAGATTCTCAAGGAAATATAAAACTCAGTGGCTCTGCTGGTCCATTGAAAGACCTGAAATCAGGGCAAAAGCTTTCTAGGTATGCAGCCGAGGCAACTGCGGAAGTTGTTGGCCGAAAGGCTAGGGGTTTGGGATTGAAATCTGTTGTCATGAAAGTGAATGGATTTACTCATTTTAGGAGAAAAAGGAATGCAATAATGAGCTGGAAGGAGGGCTTTACTGCTGGTTCTCGAGGGGATAGAAATCCAATTGTATACATTGAAGATACTACAAGAAAACCCCATAATGGTTGCAGACTCCCAAAGAAACGACGAATTTAG

>Glyma.16g202700.2 sequence-type=CDS polypeptide=Glyma.16g202700.2.p locus=Glyma.16g202700 ID=Glyma.16g202700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTATCGTTTTTTGTCTTCCATTCGCCATGGCTGTGGATCTTCCCTCACATCACTTCTCGCGCCGAAACCCACCCTTCCATTCGACGCCGCCCTACGATCTCGCCGTTTACCTCAAAACGACGGACATGTTAGAGGATTTTCAAGCTCGAATTTTGATTGGAGGAATCTTATTGTGAACGAGAATGTGAATGCAGATGATTCTATGCAGGATGCAGAGAACAGAAACTCCGAAAAGTGGAATAATATGAGGCTGAATATGAATGCAGATGCAAAAGCTCCTCCAAATTTTGTGCAGAATAGAGGGAACATAAACTCCAGAAGCTGGAACAATATGCGACAGAATTTGAATGCTCCTCCAAATTTTATGGGGAATAGAGAGAACATAAACTCCAGAAGCCAGAATAATCTGGGCCAGAATGTGGATGCAAATGCAGATGCTCTTCCAGATTTTATGCAAGATAAAGAGAACATAAACATCGGAAGCAAGAATGATGCTGAGACTGGCTGGAACTCTAGGCCTATGGACTTTGTAAGAGGAATTATAGATGAAGATAATTTTATGAAGGGTTCTCCCTTTCATCAGTATCAATATGAGCAGGATGCTGATTTTGTTCATATAAAGATGTTGCGTAATAATACCTTTGTTACTGTAACAGATTCTCAAGGAAATATAAAACTCAGTGGCTCTGCTGGTCCATTGAAAGACCTGAAATCAGGGCAAAAGCTTTCTAGGTATGCAGCCGAGGCAACTGCGGAAGTTGTTGGCCGAAAGGCTAGGGGTTTGGGATTGAAATCTGTTGTCATGAAAGTGAATGGATTTACTCATTTTAGGAGAAAAAGGAATGCAATAATGAGCTGGAAGGAGGGCTTTACTGCTGGTTCTCGAGGGGATAGAAATCCAATTGTATACATTGAAGATACTACAAGAAAACCCCATAATGGTTGCAGACTCCCAAAGAAACGACGAATTTAG

Predicted protein sequences of Glyma.16g202700

Limit To All Plant Sequences

>Glyma.16g202700.1.p sequence-type=predicted peptide transcript=Glyma.16g202700.1 locus=Glyma.16g202700 ID=Glyma.16g202700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAVDLPSHHFSRRNPPFHSTPPYDLAVYLKTTNQGFQKQPVTFWGLRDRNCGRIVSERHVRGFSSSNFDWRNLIVNENVNADDSMQDAENRNSEKWNNMRLNMNADAKAPPNFVQNRGNINSRSWNNMRQNLNAPPNFMGNRENINSRSQNNLGQNVDANADALPDFMQDKENINIGSKNDAETGWNSRPMDFVRGIIDEDNFMKGSPFHQYQYEQDADFVHIKMLRNNTFVTVTDSQGNIKLSGSAGPLKDLKSGQKLSRYAAEATAEVVGRKARGLGLKSVVMKVNGFTHFRRKRNAIMSWKEGFTAGSRGDRNPIVYIEDTTRKPHNGCRLPKKRRI*

>Glyma.16g202700.2.p sequence-type=predicted peptide transcript=Glyma.16g202700.2 locus=Glyma.16g202700 ID=Glyma.16g202700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYRFLSSIRHGCGSSLTSLLAPKPTLPFDAALRSRRLPQNDGHVRGFSSSNFDWRNLIVNENVNADDSMQDAENRNSEKWNNMRLNMNADAKAPPNFVQNRGNINSRSWNNMRQNLNAPPNFMGNRENINSRSQNNLGQNVDANADALPDFMQDKENINIGSKNDAETGWNSRPMDFVRGIIDEDNFMKGSPFHQYQYEQDADFVHIKMLRNNTFVTVTDSQGNIKLSGSAGPLKDLKSGQKLSRYAAEATAEVVGRKARGLGLKSVVMKVNGFTHFRRKRNAIMSWKEGFTAGSRGDRNPIVYIEDTTRKPHNGCRLPKKRRI*

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