Glyma.16g201300

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Report for Sequence Feature Glyma.16g201300

Feature Type:	gene_model
Chromosome:	Gm16
Start:	36279459
stop:	36287502
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.16g201300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G25410.1	AT	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	JGI	N/A	IEA
GO:0006357	GO-bp	regulation of transcription by RNA polymerase II	EnsemblGenomes	N/A	IEA
GO:0090575	GO-cc	RNA polymerase II transcription factor complex	EnsemblGenomes	N/A	IEA
GO:0000977	GO-mf	RNA polymerase II regulatory region sequence-specific DNA binding	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	EnsemblGenomes	N/A	IEA
GO:0003700	GO-mf	DNA binding transcription factor activity	EnsemblGenomes	N/A	IEA
GO:0046983	GO-mf	protein dimerization activity	EnsemblGenomes	N/A	IEA
GO:0046983	GO-mf	protein dimerization activity	JGI	N/A	IEA
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI	N/A	IEA

Expression Patterns of Glyma.16g201300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.16g201300 not represented in the dataset	Glyma.16g201300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.16g201300

Paralog	Evidence	Comments
Glyma.09g149900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.16g201300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma16g32610	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.16g201300

Limit To All Plant Sequences

>Glyma.16g201300.2 sequence-type=transcript locus=Glyma.16g201300 ID=Glyma.16g201300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAGATGGATTCTAATCTTATATGGGAAGGATTTCAGAATCTTAGCATATCAGGCGAATGAAAAAGTAGTCCTCAAACCCTAACAACTAAATGCACTTGATTTTCTTGCTTTCGTATCTTTGCTACCCCCAAAAAAGATAGCATACACAATGATGAATCCTGTCCACTAGTTTCAATTTGCTAGCTGATTATTCTCTTCCACTTTAACTAATAAGCCAGATATATGATCATCAGATCTTGTATATATGATCCTCTGAAGCAGTGATCTTTGTACAAGTCAAATGAGAAATGGCAAGGAGAAATAGTGGCAAACACTTGCTTGTTGGGGAGAAAGAAGATTATAATAAGCTTGCCATGGATGATGAAAACAAGAAGTGGATGCATAAGGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAATCTCTGCACCACCCTTAGATCGCTTCTTCCTTTAGAATATATTAAGGGAAAACGCTCAACCTCTGATCATGTGAATGAGGCTATGAATTATATCAACCACCTACAAAGTAAGGTGAAGCAATTGCAAGCAAAGAGGGATGAGTTAGTGAAGGTGTCTAATTTGATGAGTAATATTTGTCCTGAGAATATTGAAAGCTCTAGTACTATTCATCTTCCACCCTTGGTTTCTATTCATCCTTTCCCCGGAGGACTTGAGATTATGTGCAGTTACAGCTTTGGGAAAAGTTTGTTTCCCATGTCAAGAGTGTTGGACATTCTGCTTAAAGAAGGGCTTAACGTGGTTAGCACTACTTCAATCAGAAGAGATGGCAGATTCATACACACTATACGATCAGAGTATCCAATTCATTCGAATATGGCTGGCACTGATTACACTGAATTGCAAATGAAGCTTATGGAGATAATATCATCTTCAAGAATATAGCCACTTGCAGGTTTGCAAGAGACTTAGCCTGAACCTGAAAATTGATAATATCTTGGGAAAAATATATTATTTGGAGATGTTTCTGATCGCATATATACTATTAAGAGTGATTTGTGCAGCAGTGTACTTGTTATTTATCTTCCATAATTGTTGGTGCAGTACAAAGTGTAGCTAGTTGATGATTCCATTTTGTAGAGGTCATTTATCTCTTTTAATGGAAATTAAACCAAAGTCATGGATAAAATACATGGTGTTGTTCAATGTTTTGTGTGTACGTTTCTGCATTTAGCTCTTACAGTAGTTATTTTTCAATAGCCGCATCATAAATTTGAATTTCCTGTGGTATATATAATGGCGCGGCATTACTTACTTTCGCATCATGATAACCATCAAGAATTAGAATGTTGTTCATCCATTATCGTTTCTTCCTCTTCAATCTCTGTAATAATTTTTACCATTGATTCTGATACTTATGACAAAAATTGAATTGGGGAAATGCATAGAGGTTTGTTCATTCTGTCTTGTGGTTTCAATCTTGGTGCATTTCACGCAGTCTTTTAGTCAAACTTTGGTTTCTTATGTTGGGAGATCTCACCTTGAGTAGATATGGCCAAACTAATGTAATATAAATCGGAGATAAAACACATCTTGAGCATGGGCATAAAGTTTGTATTGCAGGTCATCCGATAAC

>Glyma.16g201300.3 sequence-type=transcript locus=Glyma.16g201300 ID=Glyma.16g201300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAGATGGATTCTAATCTTATATGGGAAGGATTTCAGAATCTTAGCATATCAGGCGAATGAAAAAGTAGTCCTCAAACCCTAACAACTAAATGCACTTGATTTTCTTGCTTTCGTATCTTTGCTACCCCCAAAAAAGATAGCATACACAATGATGAATCCTGTCCACTAGTTTCAATTTGCTAGCTGATTATTCTCTTCCACTTTAACTAATAAGCCAGATATATGATCATCAGATCTTGTATATATGATCCTCTGAAGCAGTGATCTTTGTACAAGTCAAATGAGAAATGGCAAGGAGAAATAGTGGCAAACACTTGCTTGTTGGGGAGAAAGAAGATTATAATAAGCTTGCCATGGATGATGAAAACAAGAAGTGGATGCATAAGGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAATCTCTGCACCACCCTTAGATCGCTTCTTCCTTTAGAATATATTAAGGGAAAACGCTCAACCTCTGATCATGTGAATGAGGCTATGAATTATATCAACCACCTACAAAGTAAGGTGAAGCAATTGCAAGCAAAGAGGGATGAGTTAGTGAAGGTGTCTAATTTGATGAGTAATATTTGTCCTGAGAATATTGAAAGCTCTAGTACTATTCATCTTCCACCCTTGGTTTCTATTCATCCTTTCCCCGGAGGACTTGAGATTATGTGCAGTTACAGCTTTGGGAAAAGTTTGTTTCCCATGTCAAGAGTGTTGGACATTCTGCTTAAAGAAGGGCTTAACGTGGTTAGCACTACTTCAATCAGAAGAGATGGCAGATTCATACACACTATACGATCAGAGTATCCAATTCATTCGAATATGGCTGGCACTGATTACACTGAATTGCAAATGAAGCTTATGGAGATAATATCATCTTCAAGTAAGTAACTCAACATCTGCTATAAAATATCTTCTGGTTGAGACAAGAATTTTCGTTCTTTTTTTTTTCTGAATATTCCTATTACAGGAATATAGCCACTTGCAGGTTTGCAAGAGACTTAGCCTGAACCTGAAAATTGATAATATCTTGGGAAAAATATATTATTTGGAGATGTTTCTGATCGCATATATACTATTAAGAGTGATTTGTGCAGCAGTGTACTTGTTATTTATCTTCCATAATTGTTGGTGCAGTACAAAGTGTAGCTAGTTGATGATTCCATTTTGTAGAGGTCATTTATCTCTTTTAATGGAAATTAAACCAAAGTCATGGATAAAATACATGGTGTTGTTCAATGTTTTGTGTGTACGTTTCTGCATTTAGCTCTTACAGTAGTTATTTTTCAATAGCCGCATCATAAATTTGAATTTCCTGTGGTATATATAATGGCGCGGCATTACTTACTTTCGCATCATGATAACCATCAAGAATTAGAATGTTGTTCATCCATTATCGTTTCTTCCTCTTCAATCTCTGTAATAATTTTTACCATTGATTCTGATACTTATGACAAAAATTGAATTGGGGAAATGCATAGAGGTTTGTTCATTCTGTCTTGTGGTTTCAATCTTGGTGCATTTCACGCAGTCTTTTAGTCAAACTTTGGTTTCTTATGTTGGGAGATCTCACCTTGAGTAGATATGGCCAAACTAATGTAATATAAATCGGAGATAAAACACATCTTGAGCATGGGCATAAAGTTTGTATTGCAGGTCATCCGATAAC

Coding sequences of Glyma.16g201300

Limit To All Plant Sequences

>Glyma.16g201300.1 sequence-type=CDS polypeptide=Glyma.16g201300.1.p locus=Glyma.16g201300 ID=Glyma.16g201300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAAGGAGAAATAGTGGCAAACACTTGCTTGTTGGGGAGAAAGAAGATTATAATAAGCTTGCCATGGATGATGAAAACAAGAAGTGGATGCATAAGGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAATCTCTGCACCACCCTTAGATCGCTTCTTCCTTTAGAATATATTAAGGGAAAACGCTCAACCTCTGATCATGTGAATGAGGCTATGAATTATATCAACCACCTACAAAGTAAGGTGAAGCAATTGCAAGCAAAGAGGGATGAGTTAGTGAAGGTGTCTAATTTGATGAGTAATATTTGTCCTGAGAATATTGAAAGCTCTAGTACTATTCATCTTCCACCCTTGGTTTCTATTCATCCTTTCCCCGGAGGACTTGAGATTATGTGCAGTTACAGCTTTGGGAAAAGTTTGTTTCCCATGTCAAGAGTGTTGGACATTCTGCTTAAAGAAGGGCTTAACGTGGTTAGCACTACTTCAATCAGAAGAGATGGCAGATTCATACACACTATACGATCAGAGTATCCAATTCATTCGAATATGGCTGGCACTGATTACACTGAATTGCAAATGAAGCTTATGGAGATAATATCATCTTCAACTATCAGATGCACGGATTGA

>Glyma.16g201300.2 sequence-type=CDS polypeptide=Glyma.16g201300.2.p locus=Glyma.16g201300 ID=Glyma.16g201300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAAGGAGAAATAGTGGCAAACACTTGCTTGTTGGGGAGAAAGAAGATTATAATAAGCTTGCCATGGATGATGAAAACAAGAAGTGGATGCATAAGGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAATCTCTGCACCACCCTTAGATCGCTTCTTCCTTTAGAATATATTAAGGGAAAACGCTCAACCTCTGATCATGTGAATGAGGCTATGAATTATATCAACCACCTACAAAGTAAGGTGAAGCAATTGCAAGCAAAGAGGGATGAGTTAGTGAAGGTGTCTAATTTGATGAGTAATATTTGTCCTGAGAATATTGAAAGCTCTAGTACTATTCATCTTCCACCCTTGGTTTCTATTCATCCTTTCCCCGGAGGACTTGAGATTATGTGCAGTTACAGCTTTGGGAAAAGTTTGTTTCCCATGTCAAGAGTGTTGGACATTCTGCTTAAAGAAGGGCTTAACGTGGTTAGCACTACTTCAATCAGAAGAGATGGCAGATTCATACACACTATACGATCAGAGTATCCAATTCATTCGAATATGGCTGGCACTGATTACACTGAATTGCAAATGAAGCTTATGGAGATAATATCATCTTCAAGAATATAG

>Glyma.16g201300.3 sequence-type=CDS polypeptide=Glyma.16g201300.3.p locus=Glyma.16g201300 ID=Glyma.16g201300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAAGGAGAAATAGTGGCAAACACTTGCTTGTTGGGGAGAAAGAAGATTATAATAAGCTTGCCATGGATGATGAAAACAAGAAGTGGATGCATAAGGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAATCTCTGCACCACCCTTAGATCGCTTCTTCCTTTAGAATATATTAAGGGAAAACGCTCAACCTCTGATCATGTGAATGAGGCTATGAATTATATCAACCACCTACAAAGTAAGGTGAAGCAATTGCAAGCAAAGAGGGATGAGTTAGTGAAGGTGTCTAATTTGATGAGTAATATTTGTCCTGAGAATATTGAAAGCTCTAGTACTATTCATCTTCCACCCTTGGTTTCTATTCATCCTTTCCCCGGAGGACTTGAGATTATGTGCAGTTACAGCTTTGGGAAAAGTTTGTTTCCCATGTCAAGAGTGTTGGACATTCTGCTTAAAGAAGGGCTTAACGTGGTTAGCACTACTTCAATCAGAAGAGATGGCAGATTCATACACACTATACGATCAGAGTATCCAATTCATTCGAATATGGCTGGCACTGATTACACTGAATTGCAAATGAAGCTTATGGAGATAATATCATCTTCAAGTAAGTAA

Predicted protein sequences of Glyma.16g201300

Limit To All Plant Sequences

>Glyma.16g201300.1.p sequence-type=predicted peptide transcript=Glyma.16g201300.1 locus=Glyma.16g201300 ID=Glyma.16g201300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MARRNSGKHLLVGEKEDYNKLAMDDENKKWMHKETERQRRQEMGNLCTTLRSLLPLEYIKGKRSTSDHVNEAMNYINHLQSKVKQLQAKRDELVKVSNLMSNICPENIESSSTIHLPPLVSIHPFPGGLEIMCSYSFGKSLFPMSRVLDILLKEGLNVVSTTSIRRDGRFIHTIRSEYPIHSNMAGTDYTELQMKLMEIISSSTIRCTD*

>Glyma.16g201300.2.p sequence-type=predicted peptide transcript=Glyma.16g201300.2 locus=Glyma.16g201300 ID=Glyma.16g201300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MARRNSGKHLLVGEKEDYNKLAMDDENKKWMHKETERQRRQEMGNLCTTLRSLLPLEYIKGKRSTSDHVNEAMNYINHLQSKVKQLQAKRDELVKVSNLMSNICPENIESSSTIHLPPLVSIHPFPGGLEIMCSYSFGKSLFPMSRVLDILLKEGLNVVSTTSIRRDGRFIHTIRSEYPIHSNMAGTDYTELQMKLMEIISSSRI*

>Glyma.16g201300.3.p sequence-type=predicted peptide transcript=Glyma.16g201300.3 locus=Glyma.16g201300 ID=Glyma.16g201300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MARRNSGKHLLVGEKEDYNKLAMDDENKKWMHKETERQRRQEMGNLCTTLRSLLPLEYIKGKRSTSDHVNEAMNYINHLQSKVKQLQAKRDELVKVSNLMSNICPENIESSSTIHLPPLVSIHPFPGGLEIMCSYSFGKSLFPMSRVLDILLKEGLNVVSTTSIRRDGRFIHTIRSEYPIHSNMAGTDYTELQMKLMEIISSSSK*

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