Glyma.16g178900

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.16g178900): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.16g178900): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.16g178900

Feature Type:	gene_model
Chromosome:	Gm16
Start:	33954446
stop:	33960344
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.16g178900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G25720.1	AT	glutaminyl cyclase	JGI	N/A	IEA
GO:0017186	GO-bp	peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0016603	GO-mf	glutaminyl-peptide cyclotransferase activity	EnsemblGenomes	N/A	IEA
PF05096	PFAM	Glutamine cyclotransferase	JGI	N/A	IEA
GN7V-53175	SoyCyc9-rxn	glutaminyl-peptide cyclotransferase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.16g178900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.16g178900 not represented in the dataset	Glyma.16g178900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.16g178900

Paralog	Evidence	Comments
Glyma.09g131600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.16g178900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma16g29760	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.16g178900

Limit To All Plant Sequences

>Glyma.16g178900.2 sequence-type=transcript locus=Glyma.16g178900 ID=Glyma.16g178900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAGATGGAAACATAAAATTTTGTGCGACAAATGGCACCCTATTCACCCAAGTAACTTGTCAGTCTGTCACTGTCATGTGAAAGAGACAAGCACGCTTCTGGCGCATGCTAGCACCATCGCTGACCTGCCACGACCATGAAGAACCATTGCTTCCATGGGAACCAAATCACTGAAACGGAGAGCTCGTGAGTCCCAGAACCCTCCCATGGCCGCCGCGGATCCTCCGCGGCGCAAGCCTCTCTCTTACGCCAAGGCATCCGTAGTTCTCTCCGCTTTTCTCGTTGTCTCCGTCATCGCTCCCTTGGTCCTTTCTTCGAACAAGTTTCGCGCGTTCCAACGCCGTGTTTCGTACGAGACGATCACCGTCGTCAACGTGTTCCCTCACGACCCAGAAGCCTTCACCCAGGGCCTTGTTTACAATGGAAATGACACCTTATTTGAGTCAACTGGTCTTTATGGGAAGTCCTCTGTCCGTAAAGTTGCTCTTCATACTGGGAAGCTTGAGGATGTGCAGAAGATGGATAGTTCATTATTTGGGGAAGGTTTAACTCTCCTCAATAATAGGCTGTTCCAAGTAACTTGGTTGCAGAAAGCTGGTTTCATATACAACCCGAAAAATTTAAGAAAGATTGGGACATTTAATCATGATATGAAAGATGGTTGGGGTCTGGCAACTGATGGAACATTGTTGTTTGGAAGTGATGGCAGTTCAACATTGTATCAAATTGATCCTCAAACGTTTAAAGTTGTATCAAAACAAGTTGTCTACTATAAGGGTCATCAAGTACACAATCTCAATGAATTGGAATACATAAATGGTGAAGTCTGGGCAAATGTTTTTATGACTGACTGCATTGTAAGAATCTCTCCCCATGATGGCAATGTTCTAGGATGGATTCTCCTCCAAAATTTAAGGAAAGAACTTATCGAAGCTGGGAATAATTGACTGGAAAACTGTGGCCAGAGCTATATGAAATCAAGGTTTCTCCTGTAAACAAACCAATTGAAGAAGGGATCATTGAGAAGCTTTGCTTGCGTAGCCCTTTCAAATTTACATGATTGATTTTTTCTGTTTCTGCTCTAATTTTTGAAACCCACTTGGGAGAATGCGAGCTGAACTGAGTTTTGGGAATAGTATTATGACATGGTCATTTTGAAGAGATATTCTGTTGGGAGAATGCTGCCTCTTTCATTGTTTGGGCATCTATTATGCCCTACCCATTATAGTATCATTCTTCCGTAGCAGGTCAAGATTTTTAATTAAAGTAAGGGAGAGGTCAATAATCTTTCAGTATGATAGGGTTGATTTTGTAAGTAACTGGAAAGTGCAATGGAAAAGGCAATTTGAGATGTTATGTGTTGCAAAAGAATGGAAATACAAGCAAAACAAAAAGAAAGTATGGATGGCTTTAGTGGTTCAATTTGAGGTGTCATCACAAGTTAAGAATTGGTTCACCAGACAGAGATTTGTAGATACTATATTGAGTACACTGTATTATGTATTTAAGATGGTGGCGTAGTTAGGAAAGGATATAAACATTCAAAGTTTAATAGATTGATTAAGTGTTTTCTAGAGATGTTCTTCACCTTTTTCGGCTGTTTAATGTGTATTGAATATAAATATTTTCCCGCTTAAGATTCTTTTCAGAAGACGGTCATTTCTTTTTATTCTC

Coding sequences of Glyma.16g178900

Limit To All Plant Sequences

>Glyma.16g178900.1 sequence-type=CDS polypeptide=Glyma.16g178900.1.p locus=Glyma.16g178900 ID=Glyma.16g178900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAACCAAATCACTGAAACGGAGAGCTCGTGAGTCCCAGAACCCTCCCATGGCCGCCGCGGATCCTCCGCGGCGCAAGCCTCTCTCTTACGCCAAGGCATCCGTAGTTCTCTCCGCTTTTCTCGTTGTCTCCGTCATCGCTCCCTTGGTCCTTTCTTCGAACAAGTTTCGCGCGTTCCAACGCCGTGTTTCGTACGAGACGATCACCGTCGTCAACGTGTTCCCTCACGACCCAGAAGCCTTCACCCAGGGCCTTGTTTACAATGGAAATGACACCTTATTTGAGTCAACTGGTCTTTATGGGAAGTCCTCTGTCCGTAAAGTTGCTCTTCATACTGGGAAGCTTGAGGATGTGCAGAAGATGGATAGTTCATTATTTGGGGAAGGTTTAACTCTCCTCAATAATAGGCTGTTCCAAGTAACTTGGTTGCAGAAAGCTGGTTTCATATACAACCCGAAAAATTTAAGAAAGATTGGGACATTTAATCATGATATGAAAGATGGTTGGGGTCTGGCAACTGATGGAACATTGTTGTTTGGAAGTGATGGCAGTTCAACATTGTATCAAATTGATCCTCAAACGTTTAAAGTTGTATCAAAACAAGTTGTCTACTATAAGGGTCATCAAGTACACAATCTCAATGAATTGGAATACATAAATGGTGAAGTCTGGGCAAATGTTTTTATGACTGACTGCATTGTAAGAATCTCTCCCCATGATGGCAATGTTCTAGGATGGATTCTCCTCCAAAATTTAAGGAAAGAACTTATCGAAGCTGGGAATAATAATATTAATGTTTTGAATGGGATAGCATGGGATGGTGAGCAAAAGCGGATATTTGTGACTGGAAAACTGTGGCCAGAGCTATATGAAATCAAGGTTTCTCCTGTAAACAAACCAATTGAAGAAGGGATCATTGAGAAGCTTTGCTTGCGTAGCCCTTTCAAATTTACATGA

>Glyma.16g178900.2 sequence-type=CDS polypeptide=Glyma.16g178900.2.p locus=Glyma.16g178900 ID=Glyma.16g178900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAACCAAATCACTGAAACGGAGAGCTCGTGAGTCCCAGAACCCTCCCATGGCCGCCGCGGATCCTCCGCGGCGCAAGCCTCTCTCTTACGCCAAGGCATCCGTAGTTCTCTCCGCTTTTCTCGTTGTCTCCGTCATCGCTCCCTTGGTCCTTTCTTCGAACAAGTTTCGCGCGTTCCAACGCCGTGTTTCGTACGAGACGATCACCGTCGTCAACGTGTTCCCTCACGACCCAGAAGCCTTCACCCAGGGCCTTGTTTACAATGGAAATGACACCTTATTTGAGTCAACTGGTCTTTATGGGAAGTCCTCTGTCCGTAAAGTTGCTCTTCATACTGGGAAGCTTGAGGATGTGCAGAAGATGGATAGTTCATTATTTGGGGAAGGTTTAACTCTCCTCAATAATAGGCTGTTCCAAGTAACTTGGTTGCAGAAAGCTGGTTTCATATACAACCCGAAAAATTTAAGAAAGATTGGGACATTTAATCATGATATGAAAGATGGTTGGGGTCTGGCAACTGATGGAACATTGTTGTTTGGAAGTGATGGCAGTTCAACATTGTATCAAATTGATCCTCAAACGTTTAAAGTTGTATCAAAACAAGTTGTCTACTATAAGGGTCATCAAGTACACAATCTCAATGAATTGGAATACATAAATGGTGAAGTCTGGGCAAATGTTTTTATGACTGACTGCATTGTAAGAATCTCTCCCCATGATGGCAATGTTCTAGGATGGATTCTCCTCCAAAATTTAAGGAAAGAACTTATCGAAGCTGGGAATAATTGA

Predicted protein sequences of Glyma.16g178900

Limit To All Plant Sequences

>Glyma.16g178900.1.p sequence-type=predicted peptide transcript=Glyma.16g178900.1 locus=Glyma.16g178900 ID=Glyma.16g178900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGTKSLKRRARESQNPPMAAADPPRRKPLSYAKASVVLSAFLVVSVIAPLVLSSNKFRAFQRRVSYETITVVNVFPHDPEAFTQGLVYNGNDTLFESTGLYGKSSVRKVALHTGKLEDVQKMDSSLFGEGLTLLNNRLFQVTWLQKAGFIYNPKNLRKIGTFNHDMKDGWGLATDGTLLFGSDGSSTLYQIDPQTFKVVSKQVVYYKGHQVHNLNELEYINGEVWANVFMTDCIVRISPHDGNVLGWILLQNLRKELIEAGNNNINVLNGIAWDGEQKRIFVTGKLWPELYEIKVSPVNKPIEEGIIEKLCLRSPFKFT*

>Glyma.16g178900.2.p sequence-type=predicted peptide transcript=Glyma.16g178900.2 locus=Glyma.16g178900 ID=Glyma.16g178900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGTKSLKRRARESQNPPMAAADPPRRKPLSYAKASVVLSAFLVVSVIAPLVLSSNKFRAFQRRVSYETITVVNVFPHDPEAFTQGLVYNGNDTLFESTGLYGKSSVRKVALHTGKLEDVQKMDSSLFGEGLTLLNNRLFQVTWLQKAGFIYNPKNLRKIGTFNHDMKDGWGLATDGTLLFGSDGSSTLYQIDPQTFKVVSKQVVYYKGHQVHNLNELEYINGEVWANVFMTDCIVRISPHDGNVLGWILLQNLRKELIEAGNN*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain