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Report for Sequence Feature Glyma.16g178800

Feature Type:gene_model
Chromosome:Gm16
Start:33950003
stop:33953968
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.16g178800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G52640.1AT heat shock protein 90.1 JGI N/AIEA
GO:0006457GO-bp protein folding EnsemblGenomesN/AIEA
GO:0006457GO-bp protein folding JGI N/AIEA
GO:0006950GO-bp response to stress EnsemblGenomesN/AIEA
GO:0006950GO-bp response to stress JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0051082GO-mf unfolded protein binding EnsemblGenomesN/AIEA
GO:0051082GO-mf unfolded protein binding JGI N/AIEA
KOG0019 KOG Molecular chaperone (HSP90 family) JGI N/AIEA
PTHR11528Panther HEAT SHOCK PROTEIN 90 JGI N/AIEA
PF00183PFAM Hsp90 protein JGI N/AIEA
PF02518PFAM Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JGI N/AIEA

Proteins Associated with Glyma.16g178800
LocusGene SymbolProtein Name
HSP90A2 heat shock protein 90-A2

Expression Patterns of Glyma.16g178800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.16g178800
ParalogEvidenceComments
Glyma.09g131500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.16g178800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma16g29750 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.16g178800
>Glyma.16g178800.2 sequence-type=transcript locus=Glyma.16g178800 ID=Glyma.16g178800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TAGAGCGCAAAACCCACAACCGTCTTCATGGAAAGTTCGCGATACTCCGCCGCGAAACTAAAAAAGCAAAACGACGCCGTTTGTTCCCAAGTCACGCGCTTCATTCAAAAAAAGAAAACATAATGCAGAGAGAGTTTCCTCGCTCTCTTTTCTGCAATTTTCTTTTTTGTTCCTTCTCTGCGGTTATCTTTTTGAGCTTCAATGGCGGACGCTGAAACCTTCGCTTTCCAGGCTGAGATCAACCAGCTTCTCAGCCTCATCATCAACACCTTCTACAGCAACAAGGAGATTTTCTTGCGTGAACTCATCAGCAACGCTTCTGATGCTTTGGATAAGATTCGATTTGAGAGTTTAACCGACAAGAGCAAGCTCGATGCTCAGCCAGAGCTCTTCATTCGTCTTGTGCCCGACAAGGCCAACAAGACTCTTTCCGTTATTGACAGCGGCATTGGAATGACCAAAGCAGATTTGGTGAACAACTTGGGTACCATTGCGAGGTCCGGGACCAAGGAGTTCATGGAGGCATTGCAGGCTGGTGCTGATGTAAGCATGATTGGGCAGTTCGGTGTGGGGTTCTACTCTGCTTACCTCGTTGCAGAGAAGGTCATTGTTACCACCAAGCACAATGATGATGAACAGTACATTTGGGAGTCTCAGGCCGGTGGCTCTTTCACTGTTACTAGGGACACCGATGGCGAGCAACTCGGAAGGGGAACCAAGATGACCCTCTTCCTCAAGGAAGATCAGTTGGAGTACTTGGAGGAGAGAAGGATCAAAGATCTGGTGAAGAAGCACTCTGAATTCATTAGCTATCCTATTTACCTATGGACTGAGAAGACCACCGAGAAAGAAATCAGCGATGATGAAGATGATGAGCCAAAGAAGGAGGAAGAAGGGGACGTTGAGGATGTTGACGAGGACAAGGAGAAGGATTCCAAGAAAAAGAAGAAGATCAAGGAGGTGTCTCATGAGTGGCAACTCATCAACAAGCAGAAACCAATTTGGCTGCGAAAGCCAGAAGAGATCACCAAGGATGAATACGCTTCTTTCTACAAGAGCCTCACCAATGACTGGGAAGAACACTTGGCTGTGAAACATTTCTCTGTTGAGGGCCAGCTTGAGTTCAAGGCCATTCTCTTTGTGCCAAAGAGGGCACCCTTTGATTTGTTTGACACCAGGAAGAAGATGAACAACATCAAACTTTATGTCAGGAGGGTGTTCATCATGGACAACTGTGAGGAGCTCATTCCCGAGTACCTCGGATTTGTGAAGGGTGTTGTCGACTCCGATGACTTGCCCCTCAACATTTCTCGTGAGCTGCTGCAGCAGAACAAGATCCTGAAGGTGATCAGGAAGAATCTTGTGAAGAAGTGCATTGAGATGTTCAATGAAATTGCGGAGAACAAGGAAGACTACAACAAGTTCTATGATGCTTTTTCGAAGAATTTGAAGTTGGGTATCCACGAGGATAGCCAGAACAGGTCCAAGTTGGCTGATTTGCTCAGATACCACTCAACAAAGAGTGGAGACGAATTGACAAGCTTGAAGGACTATGTTACACGAATGAAGGAGGGCCAGAAGGACATTTACTACATTACAGGAGAGAGCAAGAAGGCAGTGGAGAACTCTCCTTTCTTGGAGAGACTCAAGAAGAAGGGCTATGAAGTTCTCTTCATGGTGGATGCAATTGATGAGTATGCAGTTGGGCAACTCAAGGAATACGATGGCAAGAAATTGGTTTCAGCCACAAAGGAAGGGTTGAAGCTGGATGATGAGACTGaggaggagaaaaagaagaaagaggataagaagaagTCATTTGATGAGCTCTGCAAGGTCATCAAGGAAATTCTGGGAGACAAAGTGGAGAAGGTTGTTGTCTCTGACAGAATTGTTGACTCTCCTTGCTGTTTGGTGACTGGTGAATACGGATGGAGTGCAAACATGGAGAGGATCATGAAGGCTCAGGCTCTGAGAGACAGCAGCATGAGTGGCTACATGTCTAGCAAGAAGACAATGGAGATCAACCCTGACAATGGTATCATGGAGGAGTTGAGGAAGAGGGCTGAAGCTGACAAGAATGATAAGTCTGTGAAGGATCTTGTGTTGCTTCTCTTTGAGACTGCCCTTTTGACTTCAGGTTTCAGCCTTGATGATCCCAACACATTTGCTTCGAGGATTCACAGGATGTTGAAGTTGGGTCTTAGCATTGATGAGGATGACAATGGTGGAGACGATGTTGATATGCCCCCATTGGAAGAGGACGGTGCTGAGGAGAGCAAGATGGAGGAAGTGGACTAAATGCCAAAGGTCTCGTGTTAAATGAATTGTGGTTCGTGTCTGTTAAATGGTGGTGGATGCAGAAGTCttttagttttatctttctttttgttttgtttttttGAGATATATAGGGTTTTTACTTTTTAAGTTTTTGTGATGTGAAAAAAATGTGTCTGTCAGTCTGTGTGTTGCATCTACCTACTTTTGTCAGTAATTGTTCTGGATATAACATCTTTTGTCAGTAATTGTTCTGGATATAACATCAATGAAGGAGAACAAGTATTACTTCCTCTGACTTTGCCTCTTATACCTTCCTTCTAATGTACCATTGAAAATATGGTTCAAATACATTATGGTTCACCT
Coding sequences of Glyma.16g178800
>Glyma.16g178800.1 sequence-type=CDS polypeptide=Glyma.16g178800.1.p locus=Glyma.16g178800 ID=Glyma.16g178800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGACGCTGAAACCTTCGCTTTCCAGGCTGAGATCAACCAGCTTCTCAGCCTCATCATCAACACCTTCTACAGCAACAAGGAGATTTTCTTGCGTGAACTCATCAGCAACGCTTCTGATGCTTTGGATAAGATTCGATTTGAGAGTTTAACCGACAAGAGCAAGCTCGATGCTCAGCCAGAGCTCTTCATTCGTCTTGTGCCCGACAAGGCCAACAAGACTCTTTCCGTTATTGACAGCGGCATTGGAATGACCAAAGCAGATTTGGTGAACAACTTGGGTACCATTGCGAGGTCCGGGACCAAGGAGTTCATGGAGGCATTGCAGGCTGGTGCTGATGTAAGCATGATTGGGCAGTTCGGTGTGGGGTTCTACTCTGCTTACCTCGTTGCAGAGAAGGTCATTGTTACCACCAAGCACAATGATGATGAACAGTACATTTGGGAGTCTCAGGCCGGTGGCTCTTTCACTGTTACTAGGGACACCGATGGCGAGCAACTCGGAAGGGGAACCAAGATGACCCTCTTCCTCAAGGAAGATCAGTTGGAGTACTTGGAGGAGAGAAGGATCAAAGATCTGGTGAAGAAGCACTCTGAATTCATTAGCTATCCTATTTACCTATGGACTGAGAAGACCACCGAGAAAGAAATCAGCGATGATGAAGATGATGAGCCAAAGAAGGAGGAAGAAGGGGACGTTGAGGATGTTGACGAGGACAAGGAGAAGGATTCCAAGAAAAAGAAGAAGATCAAGGAGGTGTCTCATGAGTGGCAACTCATCAACAAGCAGAAACCAATTTGGCTGCGAAAGCCAGAAGAGATCACCAAGGATGAATACGCTTCTTTCTACAAGAGCCTCACCAATGACTGGGAAGAACACTTGGCTGTGAAACATTTCTCTGTTGAGGGCCAGCTTGAGTTCAAGGCCATTCTCTTTGTGCCAAAGAGGGCACCCTTTGATTTGTTTGACACCAGGAAGAAGATGAACAACATCAAACTTTATGTCAGGAGGGTGTTCATCATGGACAACTGTGAGGAGCTCATTCCCGAGTACCTCGGATTTGTGAAGGGTGTTGTCGACTCCGATGACTTGCCCCTCAACATTTCTCGTGAGCTGCTGCAGCAGAACAAGATCCTGAAGGTGATCAGGAAGAATCTTGTGAAGAAGTGCATTGAGATGTTCAATGAAATTGCGGAGAACAAGGAAGACTACAACAAGTTCTATGATGCTTTTTCGAAGAATTTGAAGTTGGGTATCCACGAGGATAGCCAGAACAGGTCCAAGTTGGCTGATTTGCTCAGATACCACTCAACAAAGAGTGGAGACGAATTGACAAGCTTGAAGGACTATGTTACACGAATGAAGGAGGGCCAGAAGGACATTTACTACATTACAGGAGAGAGCAAGAAGGCAGTGGAGAACTCTCCTTTCTTGGAGAGACTCAAGAAGAAGGGCTATGAAGTTCTCTTCATGGTGGATGCAATTGATGAGTATGCAGTTGGGCAACTCAAGGAATACGATGGCAAGAAATTGGTTTCAGCCACAAAGGAAGGGTTGAAGCTGGATGATGAGACTGAGGAGGAGAAAAAGAAGAAAGAGGATAAGAAGAAGTCATTTGATGAGCTCTGCAAGGTCATCAAGGAAATTCTGGGAGACAAAGTGGAGAAGGTTGTTGTCTCTGACAGAATTGTTGACTCTCCTTGCTGTTTGGTGACTGGTGAATACGGATGGAGTGCAAACATGGAGAGGATCATGAAGGCTCAGGCTCTGAGAGACAGCAGCATGAGTGGCTACATGTCTAGCAAGAAGACAATGGAGATCAACCCTGACAATGGTATCATGGAGGAGTTGAGGAAGAGGGCTGAAGCTGACAAGAATGATAAGTCTGTGAAGGATCTTGTGTTGCTTCTCTTTGAGACTGCCCTTTTGACTTCAGGTTTCAGCCTTGATGATCCCAACACATTTGCTTCGAGGATTCACAGGATGTTGAAGTTGGGTCTTAGCATTGATGAGGATGACAATGGTGGAGACGATGTTGATATGCCCCCATTGGAAGAGGACGGTGCTGAGGAGAGCAAGATGGAGGAAGTGGACTAA

>Glyma.16g178800.2 sequence-type=CDS polypeptide=Glyma.16g178800.2.p locus=Glyma.16g178800 ID=Glyma.16g178800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGACGCTGAAACCTTCGCTTTCCAGGCTGAGATCAACCAGCTTCTCAGCCTCATCATCAACACCTTCTACAGCAACAAGGAGATTTTCTTGCGTGAACTCATCAGCAACGCTTCTGATGCTTTGGATAAGATTCGATTTGAGAGTTTAACCGACAAGAGCAAGCTCGATGCTCAGCCAGAGCTCTTCATTCGTCTTGTGCCCGACAAGGCCAACAAGACTCTTTCCGTTATTGACAGCGGCATTGGAATGACCAAAGCAGATTTGGTGAACAACTTGGGTACCATTGCGAGGTCCGGGACCAAGGAGTTCATGGAGGCATTGCAGGCTGGTGCTGATGTAAGCATGATTGGGCAGTTCGGTGTGGGGTTCTACTCTGCTTACCTCGTTGCAGAGAAGGTCATTGTTACCACCAAGCACAATGATGATGAACAGTACATTTGGGAGTCTCAGGCCGGTGGCTCTTTCACTGTTACTAGGGACACCGATGGCGAGCAACTCGGAAGGGGAACCAAGATGACCCTCTTCCTCAAGGAAGATCAGTTGGAGTACTTGGAGGAGAGAAGGATCAAAGATCTGGTGAAGAAGCACTCTGAATTCATTAGCTATCCTATTTACCTATGGACTGAGAAGACCACCGAGAAAGAAATCAGCGATGATGAAGATGATGAGCCAAAGAAGGAGGAAGAAGGGGACGTTGAGGATGTTGACGAGGACAAGGAGAAGGATTCCAAGAAAAAGAAGAAGATCAAGGAGGTGTCTCATGAGTGGCAACTCATCAACAAGCAGAAACCAATTTGGCTGCGAAAGCCAGAAGAGATCACCAAGGATGAATACGCTTCTTTCTACAAGAGCCTCACCAATGACTGGGAAGAACACTTGGCTGTGAAACATTTCTCTGTTGAGGGCCAGCTTGAGTTCAAGGCCATTCTCTTTGTGCCAAAGAGGGCACCCTTTGATTTGTTTGACACCAGGAAGAAGATGAACAACATCAAACTTTATGTCAGGAGGGTGTTCATCATGGACAACTGTGAGGAGCTCATTCCCGAGTACCTCGGATTTGTGAAGGGTGTTGTCGACTCCGATGACTTGCCCCTCAACATTTCTCGTGAGCTGCTGCAGCAGAACAAGATCCTGAAGGTGATCAGGAAGAATCTTGTGAAGAAGTGCATTGAGATGTTCAATGAAATTGCGGAGAACAAGGAAGACTACAACAAGTTCTATGATGCTTTTTCGAAGAATTTGAAGTTGGGTATCCACGAGGATAGCCAGAACAGGTCCAAGTTGGCTGATTTGCTCAGATACCACTCAACAAAGAGTGGAGACGAATTGACAAGCTTGAAGGACTATGTTACACGAATGAAGGAGGGCCAGAAGGACATTTACTACATTACAGGAGAGAGCAAGAAGGCAGTGGAGAACTCTCCTTTCTTGGAGAGACTCAAGAAGAAGGGCTATGAAGTTCTCTTCATGGTGGATGCAATTGATGAGTATGCAGTTGGGCAACTCAAGGAATACGATGGCAAGAAATTGGTTTCAGCCACAAAGGAAGGGTTGAAGCTGGATGATGAGACTGAGGAGGAGAAAAAGAAGAAAGAGGATAAGAAGAAGTCATTTGATGAGCTCTGCAAGGTCATCAAGGAAATTCTGGGAGACAAAGTGGAGAAGGTTGTTGTCTCTGACAGAATTGTTGACTCTCCTTGCTGTTTGGTGACTGGTGAATACGGATGGAGTGCAAACATGGAGAGGATCATGAAGGCTCAGGCTCTGAGAGACAGCAGCATGAGTGGCTACATGTCTAGCAAGAAGACAATGGAGATCAACCCTGACAATGGTATCATGGAGGAGTTGAGGAAGAGGGCTGAAGCTGACAAGAATGATAAGTCTGTGAAGGATCTTGTGTTGCTTCTCTTTGAGACTGCCCTTTTGACTTCAGGTTTCAGCCTTGATGATCCCAACACATTTGCTTCGAGGATTCACAGGATGTTGAAGTTGGGTCTTAGCATTGATGAGGATGACAATGGTGGAGACGATGTTGATATGCCCCCATTGGAAGAGGACGGTGCTGAGGAGAGCAAGATGGAGGAAGTGGACTAA
Predicted protein sequences of Glyma.16g178800
>Glyma.16g178800.1.p sequence-type=predicted peptide transcript=Glyma.16g178800.1 locus=Glyma.16g178800 ID=Glyma.16g178800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFESLTDKSKLDAQPELFIRLVPDKANKTLSVIDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYIWESQAGGSFTVTRDTDGEQLGRGTKMTLFLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDEPKKEEEGDVEDVDEDKEKDSKKKKKIKEVSHEWQLINKQKPIWLRKPEEITKDEYASFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISRELLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYDAFSKNLKLGIHEDSQNRSKLADLLRYHSTKSGDELTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLDDETEEEKKKKEDKKKSFDELCKVIKEILGDKVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDSSMSGYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLVLLLFETALLTSGFSLDDPNTFASRIHRMLKLGLSIDEDDNGGDDVDMPPLEEDGAEESKMEEVD*

>Glyma.16g178800.2.p sequence-type=predicted peptide transcript=Glyma.16g178800.2 locus=Glyma.16g178800 ID=Glyma.16g178800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFESLTDKSKLDAQPELFIRLVPDKANKTLSVIDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYIWESQAGGSFTVTRDTDGEQLGRGTKMTLFLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDEPKKEEEGDVEDVDEDKEKDSKKKKKIKEVSHEWQLINKQKPIWLRKPEEITKDEYASFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISRELLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYDAFSKNLKLGIHEDSQNRSKLADLLRYHSTKSGDELTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLDDETEEEKKKKEDKKKSFDELCKVIKEILGDKVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDSSMSGYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLVLLLFETALLTSGFSLDDPNTFASRIHRMLKLGLSIDEDDNGGDDVDMPPLEEDGAEESKMEEVD*






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