Glyma.16g167800

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Report for Sequence Feature Glyma.16g167800

Feature Type:	gene_model
Chromosome:	Gm16
Start:	32772162
stop:	32778480
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.16g167800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G03190.1	AT	RAD3-like DNA-binding helicase protein	JGI	N/A	IEA
GO:0006139	GO-bp	nucleobase-containing compound metabolic process	EnsemblGenomes	N/A	IEA
GO:0006139	GO-bp	nucleobase-containing compound metabolic process	JGI	N/A	IEA
GO:0006289	GO-bp	nucleotide-excision repair	EnsemblGenomes	N/A	IEA
GO:0032508	GO-bp	DNA duplex unwinding	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	JGI	N/A	IEA
GO:0000166	GO-mf	nucleotide binding	EnsemblGenomes	N/A	IEA
GO:0003676	GO-mf	nucleic acid binding	EnsemblGenomes	N/A	IEA
GO:0003676	GO-mf	nucleic acid binding	JGI	N/A	IEA
GO:0003677	GO-mf	DNA binding	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	JGI	N/A	IEA
GO:0004003	GO-mf	ATP-dependent DNA helicase activity	EnsemblGenomes	N/A	IEA
GO:0004003	GO-mf	ATP-dependent DNA helicase activity	JGI	N/A	IEA
GO:0004386	GO-mf	helicase activity	EnsemblGenomes	N/A	IEA
GO:0005524	GO-mf	ATP binding	EnsemblGenomes	N/A	IEA
GO:0005524	GO-mf	ATP binding	JGI	N/A	IEA
GO:0008026	GO-mf	ATP-dependent helicase activity	EnsemblGenomes	N/A	IEA
GO:0008026	GO-mf	ATP-dependent helicase activity	JGI	N/A	IEA
GO:0016787	GO-mf	hydrolase activity	EnsemblGenomes	N/A	IEA
GO:0016818	GO-mf	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	EnsemblGenomes	N/A	IEA
GO:0016818	GO-mf	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	JGI	N/A	IEA
KOG1131	KOG	RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3	JGI	N/A	IEA
PTHR11472	Panther	DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER	JGI	N/A	IEA
PTHR11472:SF1	Panther	TFIIH BASAL TRANSCRIPTION FACTOR COMPLEX HELICASE XPD SUBUNIT	JGI	N/A	IEA
PF06733	PFAM	DEAD_2	JGI	N/A	IEA
PF06777	PFAM	Protein of unknown function (DUF1227)	JGI	N/A	IEA

Expression Patterns of Glyma.16g167800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.16g167800 not represented in the dataset	Glyma.16g167800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.16g167800

Paralog	Evidence	Comments
Glyma.02g082200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.16g167800 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma16g28290	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.16g167800

Limit To All Plant Sequences

>Glyma.16g167800.1 sequence-type=CDS polypeptide=Glyma.16g167800.1.p locus=Glyma.16g167800 ID=Glyma.16g167800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGTTCGAGATAGAGGACATAACCGTGTACTTCCCCTACGACAACATCTACCCGGAGCAATACTCCTACATGGTAGAACTCAAGCGCGCCCTCGACGCCAAGGGCCACTGCCTCCTAGAAATGCCCACCGGCACGGGGAAAACCATCGCACTCCTCTCCTTGATCACAAGCTACGTTCTTTCCAAACCCCATTCCCCCCTCAAGCTCCTCTACTGCACCCGCACCGTCCACGAGATGGAGAAGACGCTCGCCGAGCTCCGCCTCCTCCACGACTACCAGCTCCGCCACCTTGGCCCCGCCGCCAAGATCCTCGCCCTTGGCCTGTCGTCCAGGAAGAATCTCTGCGTTAATCCGCGGGTTCTCGCCGCGGAGAATCGCGACTCCGTGGACGCTGGATGCCGGAAGCTGACCGCGTCGTGGGTCCGGGCGGTGGCCGCGGAGAACCCTGGCGTGCCGACGTGTGAGTTCTTTGAGCAGTATGAGCGGGCGGGGTCGTCCGCGGTTCTGCCTCCCGGGGTTTATACATTGCAGGACTTGAGAGTATATGGGAAGGAGAAGGGGTGGTGCCCATACTATTTGGCACGACATATGGTGCAGTTTGCCAACGTGGTGGTGTATAGCTATCAGTATTTGCTTGATCCAAAGGTGGCTGGCATAATATCTAAGGAAATGCAGAAAGAGTCAGTTGTTGTGTTTGATGAAGCTCATAATATTGATAATGTCTGTATTGAAGCGCTTAGTGTGAGTGTGAGGAGGCAGACTATTGAAGGTGCTAGAAGAAATCTTAATAGGATGCGTCAGGAAATTGACAAGTTCAAGGCCACTGATGCAGGTAGACTCCGTGCTGAATACAACAGGCTTGTCGAAGGTTTGGCACTAAGAGGAGACCTGCCTGCTACTGATGCCTGGCTTGCAAATCCGGCCTTGCCTGATGATATACTAAAGGAGGCTGTACCTGGAAATATTCGCCGGGCTGAGCATTTTATTCATGTTTTGCGTAGATTAGTTCAATACCTTGAAGGGCGCTTGGATACTGAGAATGTGGAGAAGGAGAGCCCTGTTAGCTTTGTTGTTTCTATTCTTAACCATGCCGGAATTGACCAAAAAGCACTAAAGTTCTGTTATGATCGCCTTCATTCTTTGATGATGACATTGGAAATTACAGACACCGATGAGTTCCTTCATATCCAAACTATATGTGATTTTGCCACCCTTGTAGGAACATATGCTCGTGGTTTTTCTATTATAATTGAACCTTTTGATGAGCGAATGCCACATATTCCTGATCCTGTATTACAGCTTTGTTGCCATGATGCTTCTCTTGCTATCAAGCCAGTTTTTGAGCGATTTCAGTCTGTTGTGATTACATCTGGCACACTAAGCCCAATAGATTTGTACCCTCGTCTTTTGAATTTCAATCCTGTTGTCAGTAGAAGTTTTACTATGTCCTTAACAAGAGATTGCATATGTCCTATGGTGCTTACCCGTGGCAGTGATCAGCTTCCAGTCAGTACGAAATTTGATATGAGAAGTGATCTGGGTGTGGTAAGGAATTATGGAAGACTCTTGTTGGAAATGGCTTCAGTTGTTCCGGATGGGATTGTATGTTTCTTTGTTAGTTACTCATATATGGATGGGATAGTCAATACTTGGAATGAAAATGGAATTTTAAAGGAAATAATGCAACATAAACTTGTCTTTATTGAGACTCAGGATGTGGTAGAGACTACATTGGCTCTTGATAACTATCGCAAGGCTTGTGATTGTGGAAGAGGTGCTATCTTTTTTTCTGTTGCTAGGGGAAAGGTTGCTGAAGGTATAGATTTTGATCGACATTATGGCCGACTAGTAATCATGTTTGGTGTTCCTTTTCAATACACATTAAGCAAGATTTTGCTTGCACGTCTGGAATATCTACGGGATACTTTTCAAATTAAGGAAGGAGATTTTCTGACTTTTGATGCATTGAGACAAGCTGCTCAATGTGTGGGTCGTGTAATCCGTTCAAAGGCTGATTATGGAATGATGATTTTTGCAGACAAAAGGTATAGTCGCCATGACAAACGTTCAAAATTGCCTAGTTGGATACTATCTCACTTACATGATGCCCACCTGAACTTGAGCACAGACATGGCTTTGCATATAGCACGTGAGTTCCTCAGGAAAATGGCCCAGCCTTATGATAAAACCGGTGGCACTGGCAGGAAAACCTTGTTGTCCCAGGAAGACTTGGAGAAGATGGCTGTCAGTGGCTTGGATGATATGATGTATTGA

Predicted protein sequences of Glyma.16g167800

Limit To All Plant Sequences

>Glyma.16g167800.1.p sequence-type=predicted peptide transcript=Glyma.16g167800.1 locus=Glyma.16g167800 ID=Glyma.16g167800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKFEIEDITVYFPYDNIYPEQYSYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPHSPLKLLYCTRTVHEMEKTLAELRLLHDYQLRHLGPAAKILALGLSSRKNLCVNPRVLAAENRDSVDAGCRKLTASWVRAVAAENPGVPTCEFFEQYERAGSSAVLPPGVYTLQDLRVYGKEKGWCPYYLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTIEGARRNLNRMRQEIDKFKATDAGRLRAEYNRLVEGLALRGDLPATDAWLANPALPDDILKEAVPGNIRRAEHFIHVLRRLVQYLEGRLDTENVEKESPVSFVVSILNHAGIDQKALKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYARGFSIIIEPFDERMPHIPDPVLQLCCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMASVVPDGIVCFFVSYSYMDGIVNTWNENGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAIFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPSWILSHLHDAHLNLSTDMALHIAREFLRKMAQPYDKTGGTGRKTLLSQEDLEKMAVSGLDDMMY*

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