Glyma.16g165800

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.16g165800): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.16g165800): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.16g165800

Feature Type:	gene_model
Chromosome:	Gm16
Start:	32484354
stop:	32486237
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.16g165800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G34430.1	AT	light-harvesting chlorophyll-protein complex II subunit B1	JGI	N/A	IEA
GO:0009416	GO-bp	response to light stimulus	EnsemblGenomes	N/A	IEA
GO:0009765	GO-bp	photosynthesis, light harvesting	EnsemblGenomes	N/A	IEA
GO:0009768	GO-bp	photosynthesis, light harvesting in photosystem I	EnsemblGenomes	N/A	IEA
GO:0015979	GO-bp	photosynthesis	EnsemblGenomes	N/A	IEA
GO:0018298	GO-bp	protein-chromophore linkage	EnsemblGenomes	N/A	IEA
GO:0009507	GO-cc	chloroplast	EnsemblGenomes	N/A	IEA
GO:0009522	GO-cc	photosystem I	EnsemblGenomes	N/A	IEA
GO:0009523	GO-cc	photosystem II	EnsemblGenomes	N/A	IEA
GO:0009535	GO-cc	chloroplast thylakoid membrane	EnsemblGenomes	N/A	IEA
GO:0009536	GO-cc	plastid	EnsemblGenomes	N/A	IEA
GO:0009579	GO-cc	thylakoid	EnsemblGenomes	N/A	IEA
GO:0009941	GO-cc	chloroplast envelope	EnsemblGenomes	N/A	IEA
GO:0010287	GO-cc	plastoglobule	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0016168	GO-mf	chlorophyll binding	EnsemblGenomes	N/A	IEA
GO:0031409	GO-mf	pigment binding	EnsemblGenomes	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
PTHR21649	Panther	CHLOROPHYLL A/B BINDING PROTEIN	JGI	N/A	IEA
PF00504	PFAM	Chlorophyll A-B binding protein	JGI	N/A	IEA

Proteins Associated with Glyma.16g165800

Locus	Gene Symbol	Protein Name
	LHCB1-7	photosystem II type I chlorophyll a/b-binding protein

Expression Patterns of Glyma.16g165800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.16g165800 not represented in the dataset	Glyma.16g165800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.16g165800 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma16g28070	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.16g165800

Limit To All Plant Sequences

>Glyma.16g165800.1 sequence-type=CDS polypeptide=Glyma.16g165800.1.p locus=Glyma.16g165800 ID=Glyma.16g165800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCTTCAACAATGGCTCTCTCTTCATCATCATTGGCTGGCCAAGCTATCAAGCTTGCCCCCTCCACCCCTGAGCTTGGTGTTGGAAGGGTTAGCATGAGGAAAACAGCCTCCAAAACTGTTTCCTCAGGAAGCCCATGGTACGGCCCAGACCGTGTCAAGTACTTGGGCCCATTCTCAGGTGAGCCCCCATCCTATCTCACTGGTGAATTCCCAGGTGACTATGGTTGGGACACTGCTGGGCTTTCTGCTGACCCAGAGACTTTTGCCAAAAACCGTGAACTGGAAGTCATCCACTCCAGATGGGCCATGTTGGGAGCCTTGGGCTGTGTTTTCCCTGAACTCTTGTCCCGCAACGGAGTCAAGTTTGGCGAGGCCGTGTGGTTCAAGGCCGGGTCTCAGATATTCAGTGAGGGTGGGCTTGACTACTTGGGCAACCCAAGCCTGATCCATGCACAAAGCATTCTTGCCATCTGGGCCACCCAAGTTATCTTGATGGGTGCCGTTGAGGGTTACCGTATTGCTGGTGGGCCTCTTGGTGAGGTGACTGACCCAATCTATCCAGGTGGCAGCTTTGACCCATTGGGCCTTGCTGATGACCCAGAGGCTTTTGCTGAGTTGAAGGTGAAAGAGCTCAAGAATGGTAGGTTGGCCATGTTCTCCATGTTTGGTTTCTTTGTTCAGGCAATTGTGACAGGAAAGGGACCCTTGGAAAACCTTGCTGATCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCTTATGCCACAAACTTTGTTCCCGGAAAGTGA

Predicted protein sequences of Glyma.16g165800

Limit To All Plant Sequences

>Glyma.16g165800.1.p sequence-type=predicted peptide transcript=Glyma.16g165800.1 locus=Glyma.16g165800 ID=Glyma.16g165800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAASTMALSSSSLAGQAIKLAPSTPELGVGRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain