SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.16g164400

Feature Type:gene_model
Chromosome:Gm16
Start:32320351
stop:32323318
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.16g164400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G71695.1AT Peroxidase superfamily protein JGI N/AIEA
AT4G33420.1AT Peroxidase superfamily protein JGI N/AIEA
GO:0006979GO-bp response to oxidative stress EnsemblGenomesN/AIEA
GO:0006979GO-bp response to oxidative stress JGI N/AIEA
GO:0009664GO-bp plant-type cell wall organization EnsemblGenomesN/AIEA
GO:0042744GO-bp hydrogen peroxide catabolic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0098869GO-bp cellular oxidant detoxification EnsemblGenomesN/AIEA
GO:0005576GO-cc extracellular region EnsemblGenomesN/AIEA
GO:0009505GO-cc plant-type cell wall EnsemblGenomesN/AIEA
GO:0009506GO-cc plasmodesma EnsemblGenomesN/AIEA
GO:0004601GO-mf peroxidase activity EnsemblGenomesN/AIEA
GO:0004601GO-mf peroxidase activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0020037GO-mf heme binding EnsemblGenomesN/AIEA
GO:0020037GO-mf heme binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
PF00141PFAM Peroxidase JGI N/AIEA
GN7V-60122SoyCyc9-rxn peroxidase Plant Metabolic Network ISS

Proteins Associated with Glyma.16g164400
LocusGene SymbolProtein Name
PRXD16 Peroxiredoxin 6

Expression Patterns of Glyma.16g164400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.16g164400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma16g27900 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.16g164400
>Glyma.16g164400.2 sequence-type=transcript locus=Glyma.16g164400 ID=Glyma.16g164400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCAAGTCACACTCATAGCAAATTAATCAAACATGGCTAGGGTTAGTCCTTTGTTTCACTCTTTGCTCTTGATTTCTTCCCTTGTATTGGCTTCTCAAATCCATGTTTCCTCTGGGAAACTAGTCCCTGGACTATCATGGAATTACTATTTGTTGACATGTCCCAAGCTTGAGAGGATTATAAGGAAGCATCTTGAGGATGTCTTCGAGAAGGACAGTGGAGTAGCTCCTGGCATACTTCGACTCTTCTTCCATGACTGCTTTCCTAATTTAGGAGGCCCTGATTTTGACGTGCCACTGGGAAGAAAAGACGGCCTAGGACCAAACGCCACCGCGCCGGACAACCTACCGGCACCATTCTTCCGAACCGACGATCTTCTGAGAGGATTCGGAAATAGAGGTTTCGATGCCACCGATGTGGTCGCTCTCTCCGGCGCACACACCTACGGTCGTGCCCACTGTCCCTCCCTAGTGAACAGAACCATCGAAACGGACCCACCAATCGACCCAAACTTCAACAACAATTTGATAGCTACGTGTCCCAATGCCGAGTCCCCCAACACCGTTAATTTGGACGTGAGAACCCCCGTGAAGTTCGACAACATGTATTACATCAACCTCTTGAACCGCCAAGGAGTGTTCACTTCTGACCAGGACATCGCGGGCAGCCCCAAAACCAAGGAAATCGTGAACCAGTTCGCTTCAGACCAGAAACTGTTTTTTAAGAAATTTTCCGATGCTTTTGTGAAGGTGAGCCAGCTAGATGTGATAACGGATCGTATTGGGAAAGGGGAGATTCGTGATAAGTGCTTTGTTGCAAATAAGAGAAGATCTTCTATGGCGTCTGTGGTGGAAGAAGTAGTGGAATTGGCTCAGGAGATATAATTGTATTGGGTCCTTTTGCTCAGGGTGTTCTTTTTTGTTTTTCTGAATGGATTGTGTAATAAACGTTGATATGTGTTTTCTTTTCTTGTTGTCTTCTCATAGATCATTGCTTTGGATTGGTTCAAAGTTTAACCAGTATAACATAAACAAGGCAAAAGTAGTACGAGAATAATTTATATAAATATTGCTGCTGTGTTCCATCGAGAGCTTATTCCCTGTTATTATGGACAGTGGTGATAAAATTAGATTTAGTGACAAAAGTTGGTCACCATTTGCGAGATATAGCAACATAAAAATAGTTTTACTTAAAAAAATGCAAAATCTAATATATTTGCTTGAATTTTTGTGTATGAAA
Coding sequences of Glyma.16g164400
>Glyma.16g164400.1 sequence-type=CDS polypeptide=Glyma.16g164400.1.p locus=Glyma.16g164400 ID=Glyma.16g164400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTAGGGTTAGTCCTTTGTTTCACTCTTTGCTCTTGATTTCTTCCCTTGTATTGGCTTCTCAAATCCATGTTTCCTCTGGGAAACTAGTCCCTGGACTATCATGGAATTACTATTTGTTGACATGTCCCAAGCTTGAGAGGATTATAAGGAAGCATCTTGAGGATGTCTTCGAGAAGGACAGTGGAGTAGCTCCTGGCATACTTCGACTCTTCTTCCATGACTGCTTTCCTAATGGATGCGATGCGTCTATATTGTTGAATGGAGACGGTGACGAGAAGCAACACCGTGCTAACTTTGGTTTAAGGCAAGAGGCCATTGACGCCATTGAAAACCTTCGGGTTCTCATTTACAAGCAGTGTCTACCAGTTGTCTCATGCTCAGACATCCTTGTTATCGCAGCACGTGAAGCTGTTCGCCAATTAGGAGGCCCTGATTTTGACGTGCCACTGGGAAGAAAAGACGGCCTAGGACCAAACGCCACCGCGCCGGACAACCTACCGGCACCATTCTTCCGAACCGACGATCTTCTGAGAGGATTCGGAAATAGAGGTTTCGATGCCACCGATGTGGTCGCTCTCTCCGGCGCACACACCTACGGTCGTGCCCACTGTCCCTCCCTAGTGAACAGAACCATCGAAACGGACCCACCAATCGACCCAAACTTCAACAACAATTTGATAGCTACGTGTCCCAATGCCGAGTCCCCCAACACCGTTAATTTGGACGTGAGAACCCCCGTGAAGTTCGACAACATGTATTACATCAACCTCTTGAACCGCCAAGGAGTGTTCACTTCTGACCAGGACATCGCGGGCAGCCCCAAAACCAAGGAAATCGTGAACCAGTTCGCTTCAGACCAGAAACTGTTTTTTAAGAAATTTTCCGATGCTTTTGTGAAGGTGAGCCAGCTAGATGTGATAACGGATCGTATTGGGAAAGGGGAGATTCGTGATAAGTGCTTTGTTGCAAATAAGAGAAGATCTTCTATGGCGTCTGTGGTGGAAGAAGTAGTGGAATTGGCTCAGGAGATATAA

>Glyma.16g164400.2 sequence-type=CDS polypeptide=Glyma.16g164400.2.p locus=Glyma.16g164400 ID=Glyma.16g164400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTAGGGTTAGTCCTTTGTTTCACTCTTTGCTCTTGATTTCTTCCCTTGTATTGGCTTCTCAAATCCATGTTTCCTCTGGGAAACTAGTCCCTGGACTATCATGGAATTACTATTTGTTGACATGTCCCAAGCTTGAGAGGATTATAAGGAAGCATCTTGAGGATGTCTTCGAGAAGGACAGTGGAGTAGCTCCTGGCATACTTCGACTCTTCTTCCATGACTGCTTTCCTAATTTAGGAGGCCCTGATTTTGACGTGCCACTGGGAAGAAAAGACGGCCTAGGACCAAACGCCACCGCGCCGGACAACCTACCGGCACCATTCTTCCGAACCGACGATCTTCTGAGAGGATTCGGAAATAGAGGTTTCGATGCCACCGATGTGGTCGCTCTCTCCGGCGCACACACCTACGGTCGTGCCCACTGTCCCTCCCTAGTGAACAGAACCATCGAAACGGACCCACCAATCGACCCAAACTTCAACAACAATTTGATAGCTACGTGTCCCAATGCCGAGTCCCCCAACACCGTTAATTTGGACGTGAGAACCCCCGTGAAGTTCGACAACATGTATTACATCAACCTCTTGAACCGCCAAGGAGTGTTCACTTCTGACCAGGACATCGCGGGCAGCCCCAAAACCAAGGAAATCGTGAACCAGTTCGCTTCAGACCAGAAACTGTTTTTTAAGAAATTTTCCGATGCTTTTGTGAAGGTGAGCCAGCTAGATGTGATAACGGATCGTATTGGGAAAGGGGAGATTCGTGATAAGTGCTTTGTTGCAAATAAGAGAAGATCTTCTATGGCGTCTGTGGTGGAAGAAGTAGTGGAATTGGCTCAGGAGATATAA
Predicted protein sequences of Glyma.16g164400
>Glyma.16g164400.1.p sequence-type=predicted peptide transcript=Glyma.16g164400.1 locus=Glyma.16g164400 ID=Glyma.16g164400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MARVSPLFHSLLLISSLVLASQIHVSSGKLVPGLSWNYYLLTCPKLERIIRKHLEDVFEKDSGVAPGILRLFFHDCFPNGCDASILLNGDGDEKQHRANFGLRQEAIDAIENLRVLIYKQCLPVVSCSDILVIAAREAVRQLGGPDFDVPLGRKDGLGPNATAPDNLPAPFFRTDDLLRGFGNRGFDATDVVALSGAHTYGRAHCPSLVNRTIETDPPIDPNFNNNLIATCPNAESPNTVNLDVRTPVKFDNMYYINLLNRQGVFTSDQDIAGSPKTKEIVNQFASDQKLFFKKFSDAFVKVSQLDVITDRIGKGEIRDKCFVANKRRSSMASVVEEVVELAQEI*

>Glyma.16g164400.2.p sequence-type=predicted peptide transcript=Glyma.16g164400.2 locus=Glyma.16g164400 ID=Glyma.16g164400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MARVSPLFHSLLLISSLVLASQIHVSSGKLVPGLSWNYYLLTCPKLERIIRKHLEDVFEKDSGVAPGILRLFFHDCFPNLGGPDFDVPLGRKDGLGPNATAPDNLPAPFFRTDDLLRGFGNRGFDATDVVALSGAHTYGRAHCPSLVNRTIETDPPIDPNFNNNLIATCPNAESPNTVNLDVRTPVKFDNMYYINLLNRQGVFTSDQDIAGSPKTKEIVNQFASDQKLFFKKFSDAFVKVSQLDVITDRIGKGEIRDKCFVANKRRSSMASVVEEVVELAQEI*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo