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Report for Sequence Feature Glyma.16g158000

Feature Type:gene_model
Chromosome:Gm16
Start:31843496
stop:31846596
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.16g158000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G60340.1AT P-loop containing nucleoside triphosphate hydrolases superfamily protein JGI N/AIEA
GO:0006139GO-bp nucleobase-containing compound metabolic process JGI N/AIEA
GO:0016310GO-bp phosphorylation EnsemblGenomesN/AIEA
GO:0046939GO-bp nucleotide phosphorylation EnsemblGenomesN/AIEA
GO:0046940GO-bp nucleoside monophosphate phosphorylation EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0004017GO-mf adenylate kinase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0016301GO-mf kinase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016887GO-mf ATPase activity EnsemblGenomesN/AIEA
GO:0019205GO-mf nucleobase-containing compound kinase activity JGI N/AIEA
KOG3347 KOG Predicted nucleotide kinase/nuclear protein involved oxidative stress response JGI N/AIEA
PTHR12595Panther POS9-ACTIVATING FACTOR FAP7-RELATED JGI N/AIEA
PF00004PFAM ATPase family associated with various cellular activities (AAA) JGI N/AIEA
PWY-7219SoyCyc9 adenosine ribonucleotides de novo biosynthesis Plant Metabolic Network ISS
PWY-7224SoyCyc9 purine deoxyribonucleosides salvage Plant Metabolic Network ISS
PWY-7229SoyCyc9 superpathway of adenosine nucleotides de novo biosynthesis I Plant Metabolic Network ISS
PWY-841SoyCyc9 superpathway of purine nucleotides de novo biosynthesis I Plant Metabolic Network ISS
GN7V-43222SoyCyc9-rxn (deoxy)nucleoside-phosphate kinase Plant Metabolic Network ISS

Expression Patterns of Glyma.16g158000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.16g158000 not represented in the dataset
Glyma.16g158000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.16g158000
ParalogEvidenceComments
Glyma.02g076000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.16g158000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma16g27430 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.16g158000
>Glyma.16g158000.2 sequence-type=transcript locus=Glyma.16g158000 ID=Glyma.16g158000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CGAGCGTGATTTTCTCGTTATAAAAATAAGAAGGAAGAGTGATTCAAATCTGAAGCTGAACCCTAACTAGCTGAGCAGACGGAGGAGAACTCGACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTGGTGACTGGCACACCGGGGACAGGAAAGACAACTGTGTGCACTGCTCTAGCTGAAGCCACCCAGCTCTGTCACATCAATGTCGGAGAATTAGTCAAAGAAAAGAACTTGCATGATGGATGGGATGATGAGCTTGATTGTTACCTTCTTAATGAAGACTTGGTTTGTGATGAACTTGAGGATGTTATGGAAGAGGGGGGAAACATTGTGGACTACCATGGCTGTGATTTCTTTCCTGAGCGTTGGTTTGATTGCGTGGTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCAAGTTCTGCTTGAGGAGGCTAAAGAAAGTTACTCGGAGGAGAAAGTGATTGCAATGAAGAGTGATAATATAGAAGACGTTAGTAGAAATGTGGCAACTCTGACAGATTGGGTCAGAAATTGGTCTTTACCCTCACATTCTTAACAAAAAAAAATGAGTACTTTGTATATACCTTTCTGCTTGAGTATGGTGAAAGTATCACGATGAACTGCTACCTGAAGCAGATCTGCAGTGTGGTTGAATTCTCTTGCAAATTTTGGTGTGGCATGTATTTGTGGCATTTTATGTGATGGGTTTTAAATTTGACAATTGAAAGGTAACTTTTACCAAGTTGTGATAATGAGTTTCAAATAGTTAAGGGAAAAATTACCTTGTTAGATCTTGTTTAATAAACCTCCCTTTATATAGAGCTACCAAACTGTAGAAACATTATCCACCCTCTCGTATTTcatccctccatcatccatccatcACTTTCTTTCGTAAAGC
Coding sequences of Glyma.16g158000
>Glyma.16g158000.1 sequence-type=CDS polypeptide=Glyma.16g158000.1.p locus=Glyma.16g158000 ID=Glyma.16g158000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTGGTGACTGGCACACCGGGGACAGGAAAGACAACTGTGTGCACTGCTCTAGCTGAAGCCACCCAGCTCTGTCACATCAATGTCGGAGAATTAGTCAAAGAAAAGAACTTGCATGATGGATGGGATGATGAGCTTGATTGTTACCTTCTTAATGAAGACTTGGTTTGTGATGAACTTGAGGATGTTATGGAAGAGGGGGGAAACATTGTGGACTACCATGGCTGTGATTTCTTTCCTGAGCGTTGGTTTGATTGCGTGGTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCAAGTTCTGCTTGAGGAGGCTAAAGAAAGTTACTCGGAGGAGAAAGTGATTGCAATGAAGAGTGATAATATAGAAGACGTTAGTAGAAATGTGGCAACTCTGACAGATTGGGTCAGAAATTGGTCTTTACCCTCACATTCTTAA

>Glyma.16g158000.2 sequence-type=CDS polypeptide=Glyma.16g158000.2.p locus=Glyma.16g158000 ID=Glyma.16g158000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTGGTGACTGGCACACCGGGGACAGGAAAGACAACTGTGTGCACTGCTCTAGCTGAAGCCACCCAGCTCTGTCACATCAATGTCGGAGAATTAGTCAAAGAAAAGAACTTGCATGATGGATGGGATGATGAGCTTGATTGTTACCTTCTTAATGAAGACTTGGTTTGTGATGAACTTGAGGATGTTATGGAAGAGGGGGGAAACATTGTGGACTACCATGGCTGTGATTTCTTTCCTGAGCGTTGGTTTGATTGCGTGGTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCAAGTTCTGCTTGAGGAGGCTAAAGAAAGTTACTCGGAGGAGAAAGTGATTGCAATGAAGAGTGATAATATAGAAGACGTTAGTAGAAATGTGGCAACTCTGACAGATTGGGTCAGAAATTGGTCTTTACCCTCACATTCTTAA
Predicted protein sequences of Glyma.16g158000
>Glyma.16g158000.1.p sequence-type=predicted peptide transcript=Glyma.16g158000.1 locus=Glyma.16g158000 ID=Glyma.16g158000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVQENGKRKKPNILVTGTPGTGKTTVCTALAEATQLCHINVGELVKEKNLHDGWDDELDCYLLNEDLVCDELEDVMEEGGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLSRRGYKDSKLSNNIECEIFQVLLEEAKESYSEEKVIAMKSDNIEDVSRNVATLTDWVRNWSLPSHS*

>Glyma.16g158000.2.p sequence-type=predicted peptide transcript=Glyma.16g158000.2 locus=Glyma.16g158000 ID=Glyma.16g158000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVQENGKRKKPNILVTGTPGTGKTTVCTALAEATQLCHINVGELVKEKNLHDGWDDELDCYLLNEDLVCDELEDVMEEGGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLSRRGYKDSKLSNNIECEIFQVLLEEAKESYSEEKVIAMKSDNIEDVSRNVATLTDWVRNWSLPSHS*






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