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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G12840.1 | AT | vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) | JGI | N/A | IEA |
| GO:0006811 | GO-bp | ion transport | EnsemblGenomes | N/A | IEA |
| GO:0015991 | GO-bp | ATP hydrolysis coupled proton transport | EnsemblGenomes | N/A | IEA |
| GO:0015991 | GO-bp | ATP hydrolysis coupled proton transport | JGI | N/A | IEA |
| GO:0000221 | GO-cc | vacuolar proton-transporting V-type ATPase, V1 domain | EnsemblGenomes | N/A | IEA |
| GO:0033180 | GO-cc | proton-transporting V-type ATPase, V1 domain | EnsemblGenomes | N/A | IEA |
| GO:0033180 | GO-cc | proton-transporting V-type ATPase, V1 domain | JGI | N/A | IEA |
| GO:0008553 | GO-mf | proton-exporting ATPase activity, phosphorylative mechanism | EnsemblGenomes | N/A | IEA |
| GO:0015078 | GO-mf | proton transmembrane transporter activity | EnsemblGenomes | N/A | IEA |
| GO:0015078 | GO-mf | hydrogen ion transmembrane transporter activity | JGI | N/A | IEA |
| GO:0046961 | GO-mf | proton-transporting ATPase activity, rotational mechanism | EnsemblGenomes | N/A | IEA |
| KOG2909 | KOG | Vacuolar H+-ATPase V1 sector, subunit C | JGI | N/A | IEA |
| PTHR10137 | Panther | V-TYPE PROTON ATPASE SUBUNIT C | JGI | N/A | IEA |
| PF03223 | PFAM | V-ATPase subunit C | JGI | N/A | IEA |
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Glyma.16g146600 not represented in the dataset |
Glyma.16g146600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.02g065500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma16g26220 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.16g146600.2 sequence-type=transcript locus=Glyma.16g146600 ID=Glyma.16g146600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 CTGTCTGTAGtttgttttcattttcatctcttttcttttctCCTCCAGACACAAATCAGCAAAAACACGATCCATTCCCAATTTCCATCACACACAGACAAACACTCTCTACATTTTCATTTCCCCGCGTGATCGTTCAGATTCACAGGCCTTATGGCGACGAGATATTGGGTAGTGTCTCTCCCCGTTCAAAATTCCGCATCCACTCTCTGGAACAAATTGCAGGAACAAATCTCCAAACACTCCTTCGACACTCCTCTTTACAGATTCAATATCCCCAATCTCCGGGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATCTCGTCAAGTCGAACAGTTTCGTGGAGGGAGTGTCGCACAAGATAAGGCGGCAGATTGAGGAGCTGGAGAGAGTGTCGGGCGTGATGAGCAGTGGTTTGACGGTGGATGGAGTCCCCGTTGATTCCTACTTGACGCGGTTTGTTTGGGATGAAGCGAGGTACCCGACTATGTCGCCATTGAAGGAGATTATCGATGGGATTCACGGTCAGGTGGCAAAGATTGAGGATGATCTCAAGGTTCGTGTTTCCGAGTATAACAATATCCGCAGTCAGCTTAATGCCATCAACCGAAAGCAAACTGGAAGCTTAGCTGTCCGTGATCTTTCCGACTTGGTAAAACCTGAGGATATTATAACTTCAGAAAATTTAACTACCCTTCTGGCAATTGTTCCCAAGTATTCACAGAAGGATTGGCTCTCTAGTTATGAAATCTTGACAAACTATGTGGTTCCCAGGTCTTCCAAGAAGTTGTATGAGGATAACGAATATGCTCTTTATACTGTAACACTCTTCAGTCGTGTTGCAGACAATTTTAGAACTAGTGCACGGGAAGAAGGGTTCCAAATTCGTGATTTCGAATACAGTCCCGAATCACACGACAGCAGGAAGCAAGAGTTAGAGAAATTGGTGGAAGATCAGGAAAGTTTGAGGGGTTCTCTATTGCAGTGGTGTTATACAAGTTATGGAGAGGTTTTCAGCTCCTGGATGCACTTTTGTGCAGTGCGTGTATTTACCGAGAGCATTCTGAGATATGGTCTTCCACCATCTTTCTTGGCATGTGTTTTAGCTCCATCAGTCAAAGCAGAGAAGAAAGTACGTTCTATCCTTGAAGGGTTGAGCGATAGCTCAAACAGGTGAGTGGCTTGTTTCTGTTTAGTGTATGGCTTAAAATAGATATACTTAAGTAATTTTTATACCCGCAAAAGCACAGACATGATTGGGGTCAAGATCCTTCTCTTCTCTTCTTTTTTTTGGGTCACCATGACATTGGTGCGGTGATGACTAATCTCGCCGGGAAACTTGGCTG
>Glyma.16g146600.1 sequence-type=CDS polypeptide=Glyma.16g146600.1.p locus=Glyma.16g146600 ID=Glyma.16g146600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGACGAGATATTGGGTAGTGTCTCTCCCCGTTCAAAATTCCGCATCCACTCTCTGGAACAAATTGCAGGAACAAATCTCCAAACACTCCTTCGACACTCCTCTTTACAGATTCAATATCCCCAATCTCCGGGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATCTCGTCAAGTCGAACAGTTTCGTGGAGGGAGTGTCGCACAAGATAAGGCGGCAGATTGAGGAGCTGGAGAGAGTGTCGGGCGTGATGAGCAGTGGTTTGACGGTGGATGGAGTCCCCGTTGATTCCTACTTGACGCGGTTTGTTTGGGATGAAGCGAGGTACCCGACTATGTCGCCATTGAAGGAGATTATCGATGGGATTCACGGTCAGGTGGCAAAGATTGAGGATGATCTCAAGGTTCGTGTTTCCGAGTATAACAATATCCGCAGTCAGCTTAATGCCATCAACCGAAAGCAAACTGGAAGCTTAGCTGTCCGTGATCTTTCCGACTTGGTAAAACCTGAGGATATTATAACTTCAGAAAATTTAACTACCCTTCTGGCAATTGTTCCCAAGTATTCACAGAAGGATTGGCTCTCTAGTTATGAAATCTTGACAAACTATGTGGTTCCCAGGTCTTCCAAGAAGTTGTATGAGGATAACGAATATGCTCTTTATACTGTAACACTCTTCAGTCGTGTTGCAGACAATTTTAGAACTAGTGCACGGGAAGAAGGGTTCCAAATTCGTGATTTCGAATACAGTCCCGAATCACACGACAGCAGGAAGCAAGAGTTAGAGAAATTGGTGGAAGATCAGGAAAGTTTGAGGGGTTCTCTATTGCAGTGGTGTTATACAAGTTATGGAGAGGTTTTCAGCTCCTGGATGCACTTTTGTGCAGTGCGTGTATTTACCGAGAGCATTCTGAGATATGGTCTTCCACCATCTTTCTTGGCATGTGTTTTAGCTCCATCAGTCAAAGCAGAGAAGAAAGTACGTTCTATCCTTGAAGGGTTGAGCGATAGCTCAAACAGTGCTTACTGGAAGACTGAGGACGAAGGAGTTGGGATGGCTGGCCTAGCAGGTGATGCTGATGCCCACCCTTATGTCTCCTTCACTATCAATCTTGTTTGA >Glyma.16g146600.2 sequence-type=CDS polypeptide=Glyma.16g146600.2.p locus=Glyma.16g146600 ID=Glyma.16g146600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGACGAGATATTGGGTAGTGTCTCTCCCCGTTCAAAATTCCGCATCCACTCTCTGGAACAAATTGCAGGAACAAATCTCCAAACACTCCTTCGACACTCCTCTTTACAGATTCAATATCCCCAATCTCCGGGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATCTCGTCAAGTCGAACAGTTTCGTGGAGGGAGTGTCGCACAAGATAAGGCGGCAGATTGAGGAGCTGGAGAGAGTGTCGGGCGTGATGAGCAGTGGTTTGACGGTGGATGGAGTCCCCGTTGATTCCTACTTGACGCGGTTTGTTTGGGATGAAGCGAGGTACCCGACTATGTCGCCATTGAAGGAGATTATCGATGGGATTCACGGTCAGGTGGCAAAGATTGAGGATGATCTCAAGGTTCGTGTTTCCGAGTATAACAATATCCGCAGTCAGCTTAATGCCATCAACCGAAAGCAAACTGGAAGCTTAGCTGTCCGTGATCTTTCCGACTTGGTAAAACCTGAGGATATTATAACTTCAGAAAATTTAACTACCCTTCTGGCAATTGTTCCCAAGTATTCACAGAAGGATTGGCTCTCTAGTTATGAAATCTTGACAAACTATGTGGTTCCCAGGTCTTCCAAGAAGTTGTATGAGGATAACGAATATGCTCTTTATACTGTAACACTCTTCAGTCGTGTTGCAGACAATTTTAGAACTAGTGCACGGGAAGAAGGGTTCCAAATTCGTGATTTCGAATACAGTCCCGAATCACACGACAGCAGGAAGCAAGAGTTAGAGAAATTGGTGGAAGATCAGGAAAGTTTGAGGGGTTCTCTATTGCAGTGGTGTTATACAAGTTATGGAGAGGTTTTCAGCTCCTGGATGCACTTTTGTGCAGTGCGTGTATTTACCGAGAGCATTCTGAGATATGGTCTTCCACCATCTTTCTTGGCATGTGTTTTAGCTCCATCAGTCAAAGCAGAGAAGAAAGTACGTTCTATCCTTGAAGGGTTGAGCGATAGCTCAAACAGGTGA
>Glyma.16g146600.1.p sequence-type=predicted peptide transcript=Glyma.16g146600.1 locus=Glyma.16g146600 ID=Glyma.16g146600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MATRYWVVSLPVQNSASTLWNKLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLVKSNSFVEGVSHKIRRQIEELERVSGVMSSGLTVDGVPVDSYLTRFVWDEARYPTMSPLKEIIDGIHGQVAKIEDDLKVRVSEYNNIRSQLNAINRKQTGSLAVRDLSDLVKPEDIITSENLTTLLAIVPKYSQKDWLSSYEILTNYVVPRSSKKLYEDNEYALYTVTLFSRVADNFRTSAREEGFQIRDFEYSPESHDSRKQELEKLVEDQESLRGSLLQWCYTSYGEVFSSWMHFCAVRVFTESILRYGLPPSFLACVLAPSVKAEKKVRSILEGLSDSSNSAYWKTEDEGVGMAGLAGDADAHPYVSFTINLV* >Glyma.16g146600.2.p sequence-type=predicted peptide transcript=Glyma.16g146600.2 locus=Glyma.16g146600 ID=Glyma.16g146600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MATRYWVVSLPVQNSASTLWNKLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLVKSNSFVEGVSHKIRRQIEELERVSGVMSSGLTVDGVPVDSYLTRFVWDEARYPTMSPLKEIIDGIHGQVAKIEDDLKVRVSEYNNIRSQLNAINRKQTGSLAVRDLSDLVKPEDIITSENLTTLLAIVPKYSQKDWLSSYEILTNYVVPRSSKKLYEDNEYALYTVTLFSRVADNFRTSAREEGFQIRDFEYSPESHDSRKQELEKLVEDQESLRGSLLQWCYTSYGEVFSSWMHFCAVRVFTESILRYGLPPSFLACVLAPSVKAEKKVRSILEGLSDSSNR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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