Glyma.16g139500

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Report for Sequence Feature Glyma.16g139500

Feature Type:	gene_model
Chromosome:	Gm16
Start:	29686243
stop:	29690410
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.16g139500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G66550.1	AT	Maf-like protein	JGI	N/A	IEA
GO:0005737	GO-cc	cytoplasm	JGI	N/A	IEA
GO:0047429	GO-mf	nucleoside-triphosphate diphosphatase activity	EnsemblGenomes	N/A	IEA
KOG1509	KOG	Predicted nucleic acid-binding protein ASMTL	JGI	N/A	IEA
PTHR11746	Panther	O-METHYLTRANSFERASE	JGI	N/A	IEA
PTHR11746:SF56	Panther		JGI	N/A	IEA
PF02545	PFAM	Maf-like protein	JGI	N/A	IEA
GN7V-65055	SoyCyc9-rxn	Enzyme name not determined	Plant Metabolic Network		ISS

Expression Patterns of Glyma.16g139500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.16g139500 not represented in the dataset	Glyma.16g139500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.16g139500

Paralog	Evidence	Comments
Glyma.02g056700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.16g139500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma16g25380	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.16g139500

Limit To All Plant Sequences

>Glyma.16g139500.2 sequence-type=transcript locus=Glyma.16g139500 ID=Glyma.16g139500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TAATCCCTGATGTGAAGCAATCTGACGGTGGCCTTCAAAATAAATTTGAGAACTCCTACCTTTAGTTTTTGTAGCCTCCTATTTTTTTCGGAAGCAGCTCTAGACTCTTCTGCAGCTGCAGTTAAGAGCTTCGTGGACATGGCTACCAAAAATCCACCCTTCAAGATAATTCTGGGCTCTTCTTCAAAGGCCCGCAGAGAGATTCTTTCTGAGATGGGATATGAGTTCACAGTAATGACTGCAGACATTGATGAGAAATGTATTAGGAGGGAAAAGCCAGAAGATTTGGTAATGGCATTAGCTGAGGCAAAGGCTGATGCTATTGTGCAAAGGCTCCCTACTGGAGGCCCATTGGAGGAAGATGCTTCTACAACACTGTTAATTACTGCAGACACGGTTGTGGTGTATCGAGGAGTAATAAGGGAAAAACCAACTAGTGAAAAAGAAGCACGTGATTTCATCAAAGGATATTCTGGTAGTCATGCAGCAGTGGTAGGATCTGTTGTTGTAACTAACCTTGCAACTGGAAAACGTTGTGGGGGCTGGGACAGTGCAGAGGTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTGGAAATTCTTGTCCAACTGAATACTATATGAGTTTTCTTATTTGATGGGAGCTTCTCAGATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACATCCACTGACATTGCCCTTTGTGGACGCAGTAGTTGGGTCAACTGATACCGTGATGGGACTTTCCAAAGCTCTTACAGAGAAACTCTTATTGGAAGCACTATAACTGTTGCCACAATGGTACAATTATATTCTGAGATACTAAGTGCTGGCTAACGGCAAAAACTACTGCAATTAAATTCAAATTTTTGGTTTGACCTATTCATGTAATGCAAAATACAAACAAGAATGCCCGAGACTTAACTGATTATTTTGTCACAAGCTGATTTAACTTCAATGATTCATTTCCCAGTCTTGCATGAAATAACTGATTGTATCAGCAATCCACTCTTGGATTACATATTTGTCACACCAATGAGATGCATCAGTGGTGATTCCTCTGAATTGCCTTTTCCAGTCCAAGGTTGAATATCAGTTCCGGGTGGGGTGGCCATTTCTTTTTACAACAGTACAGTTAGGAA

>Glyma.16g139500.3 sequence-type=transcript locus=Glyma.16g139500 ID=Glyma.16g139500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGACGGTGGCCTTCAAAATAAATTTGAGAACTCCTACCTTTAGTTTTTGTAGCCTCCTATTTTTTTCGGAAGCAGCTCTAGACTCTTCTGCAGCTGCAGTTAAGAGCTTCGTGGACATGGCTACCAAAAATCCACCCTTCAAGATAATTCTGGGCTCTTCTTCAAAGGCCCGCAGAGAGATTCTTTCTGAGATGGGATATGAGTTCACAGTAATGACTGCAGACATTGATGAGAAATGTATTAGGAGGGAAAAGCCAGAAGATTTGGTAATGGCATTAGCTGAGGCAAAGGCTGATGCTATTGTGCAAAGGCTCCCTACTGGAGGCCCATTGGAGGAAGATGCTTCTACAACACTGTTAATTACTGCAGACACGGTTGTGGTGTATCGAGGAGTAATAAGGGAAAAACCAACTAGTGAAAAAGAAGCACGTGATTTCATCAAAGGATATTCTGGTAGTCATGCAGCAGTGGTAGGATCTGTTGTTGTAACTAACCTTGCAACTGGAAAACGTTGTGGGGGCTGGGACAGTGCAGAGGAAATTCTTGTCCAACTGAATACTATATGAGTTTTCTTATTTGATGGGAGCTTCTCAGATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACATCCACTGACATTGCCCTTTGTGGACGCAGTAGTTGGGTCAACTGATACCGTGATGGGACTTTCCAAAGCTCTTACAGAGAAACTCTTATTGGAAGCACTATAACTGTTGCCACAATGGTACAATTATATTCTGAGATACTAAGTGCTGGCTAACGGCAAAAACTACTGCAATTAAATTCAAATTTTTGGTTTGACCTATTCATGTAATGCAAAATACAAACAAGAATGCCCGAGACTTAACTGATTATTTTGTCACAAGCTGATTTAACTTCAATGATTCATTTCCCAGTCTTGCATGAAATAACTGATTGTATCAGCAATCCACTCTTGGATTACATATTTGTCACACCAATGAGATGCATCAGTGGTGATTCCTCTGAATTGCCTTTTCCAGTCCAAGGTTGAATATCAGTTCCGGGTGGGGTGGCCATTTCTTTTTACAACAGTACAGTTAGGAA

>Glyma.16g139500.4 sequence-type=transcript locus=Glyma.16g139500 ID=Glyma.16g139500.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGTTTTTGTAGCCTCCTATTTTTTTCGGAAGCAGCTCTAGACTCTTCTGCAGCTGCAGTTAAGAGCTTCGTGGACATGGCTACCAAAAATCCACCCTTCAAGATAATTCTGGGCTCTTCTTCAAAGGCCCGCAGAGAGATTCTTTCTGAGATGGGATATGAGTTCACAGTAATGACTGCAGACATTGATGAGAAATGTATTAGGAGGGAAAAGCCAGAAGATTTGGTAATGGCATTAGCTGAGGCAAAGGCTGATGCTATTGTGCAAAGGCTCCCTACTGGAGGCCCATTGGAGGAAGATGCTTCTACAACACTGTTAATTACTGCAGACACGGTTGTGGTGTATCGAGGAGTAATAAGGGAAAAACCAACTAGTGAAAAAGAAGCACGTGATTTCATCAAAGGATATTCTGGTAGTCATGCAGCAGTGGTAGGATCTGTTGTTGTAACTAACCTTGCAACTGGAAAACGTTGTGGGGGCTGGGACAGTGCAGAGGTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTGGTAAACTTTTTAGAAGTACACTTTTCACCCTTGCACTGAATTAAGTATGAAGGTGAAAAGAGTACTTTAACCAGTTTCTCAAAACAGATGATCTTTTGAAACTTTCTTTCAGGAAATTCTTGTCCAACTGAATACTATATGAGTTTTCTTATTTGATGGGAGCTTCTCAGATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACATCCACTGACATTGCCCTTTGTGGACGCAGTAGTTGGGTCAACTGATACCGTGATGGGACTTTCCAAAGCTCTTACAGAGAAACTCTTATTGGAAGCACTATAACTGTTGCCACAATGGTACAATTATATTCTGAGATACTAAGTGCTGGCTAACGGCAAAAACTACTGCAATTAAATTCAAATTTTTGGTTTGACCTATTCATGTAATGCAAAATACAAACAAGAATGCCCGAGACTTAACTGATTATTTTGTCACAAGCTGATTTAACTTCAATGATTCATTTCCCAGTCTTGCATGAAATAACTGATTGTATCAGCAATCCACTCTTGGATTACATATTTGTCACACCAATGAGATGCATCAGTGGTGATTCCTCTGAATTGCCTTTTCCAGTCCAAGGTTGAATATCAGTTCCGGGTGGGGTGGCCATTTCTTTTTACAACAGTACAGTTAGGAA

Coding sequences of Glyma.16g139500

Limit To All Plant Sequences

>Glyma.16g139500.1 sequence-type=CDS polypeptide=Glyma.16g139500.1.p locus=Glyma.16g139500 ID=Glyma.16g139500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTACCAAAAATCCACCCTTCAAGATAATTCTGGGCTCTTCTTCAAAGGCCCGCAGAGAGATTCTTTCTGAGATGGGATATGAGTTCACAGTAATGACTGCAGACATTGATGAGAAATGTATTAGGAGGGAAAAGCCAGAAGATTTGGTAATGGCATTAGCTGAGGCAAAGGCTGATGCTATTGTGCAAAGGCTCCCTACTGGAGGCCCATTGGAGGAAGATGCTTCTACAACACTGTTAATTACTGCAGACACGGTTGTGGTGTATCGAGGAGTAATAAGGGAAAAACCAACTAGTGAAAAAGAAGCACGTGATTTCATCAAAGGATATTCTGGTAGTCATGCAGCAGTGGTAGGATCTGTTGTTGTAACTAACCTTGCAACTGGAAAACGTTGTGGGGGCTGGGACAGTGCAGAGGTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTGATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACATCCACTGACATTGCCCTTTGTGGACGCAGTAGTTGGGTCAACTGATACCGTGATGGGACTTTCCAAAGCTCTTACAGAGAAACTCTTATTGGAAGCACTATAA

>Glyma.16g139500.2 sequence-type=CDS polypeptide=Glyma.16g139500.2.p locus=Glyma.16g139500 ID=Glyma.16g139500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTACCAAAAATCCACCCTTCAAGATAATTCTGGGCTCTTCTTCAAAGGCCCGCAGAGAGATTCTTTCTGAGATGGGATATGAGTTCACAGTAATGACTGCAGACATTGATGAGAAATGTATTAGGAGGGAAAAGCCAGAAGATTTGGTAATGGCATTAGCTGAGGCAAAGGCTGATGCTATTGTGCAAAGGCTCCCTACTGGAGGCCCATTGGAGGAAGATGCTTCTACAACACTGTTAATTACTGCAGACACGGTTGTGGTGTATCGAGGAGTAATAAGGGAAAAACCAACTAGTGAAAAAGAAGCACGTGATTTCATCAAAGGATATTCTGGTAGTCATGCAGCAGTGGTAGGATCTGTTGTTGTAACTAACCTTGCAACTGGAAAACGTTGTGGGGGCTGGGACAGTGCAGAGGTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTGGAAATTCTTGTCCAACTGAATACTATATGA

>Glyma.16g139500.3 sequence-type=CDS polypeptide=Glyma.16g139500.3.p locus=Glyma.16g139500 ID=Glyma.16g139500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTACCAAAAATCCACCCTTCAAGATAATTCTGGGCTCTTCTTCAAAGGCCCGCAGAGAGATTCTTTCTGAGATGGGATATGAGTTCACAGTAATGACTGCAGACATTGATGAGAAATGTATTAGGAGGGAAAAGCCAGAAGATTTGGTAATGGCATTAGCTGAGGCAAAGGCTGATGCTATTGTGCAAAGGCTCCCTACTGGAGGCCCATTGGAGGAAGATGCTTCTACAACACTGTTAATTACTGCAGACACGGTTGTGGTGTATCGAGGAGTAATAAGGGAAAAACCAACTAGTGAAAAAGAAGCACGTGATTTCATCAAAGGATATTCTGGTAGTCATGCAGCAGTGGTAGGATCTGTTGTTGTAACTAACCTTGCAACTGGAAAACGTTGTGGGGGCTGGGACAGTGCAGAGGAAATTCTTGTCCAACTGAATACTATATGA

>Glyma.16g139500.4 sequence-type=CDS polypeptide=Glyma.16g139500.4.p locus=Glyma.16g139500 ID=Glyma.16g139500.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTACCAAAAATCCACCCTTCAAGATAATTCTGGGCTCTTCTTCAAAGGCCCGCAGAGAGATTCTTTCTGAGATGGGATATGAGTTCACAGTAATGACTGCAGACATTGATGAGAAATGTATTAGGAGGGAAAAGCCAGAAGATTTGGTAATGGCATTAGCTGAGGCAAAGGCTGATGCTATTGTGCAAAGGCTCCCTACTGGAGGCCCATTGGAGGAAGATGCTTCTACAACACTGTTAATTACTGCAGACACGGTTGTGGTGTATCGAGGAGTAATAAGGGAAAAACCAACTAGTGAAAAAGAAGCACGTGATTTCATCAAAGGATATTCTGGTAGTCATGCAGCAGTGGTAGGATCTGTTGTTGTAACTAACCTTGCAACTGGAAAACGTTGTGGGGGCTGGGACAGTGCAGAGGTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTGGTAAACTTTTTAGAAGTACACTTTTCACCCTTGCACTGA

Predicted protein sequences of Glyma.16g139500

Limit To All Plant Sequences

>Glyma.16g139500.1.p sequence-type=predicted peptide transcript=Glyma.16g139500.1 locus=Glyma.16g139500 ID=Glyma.16g139500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATKNPPFKIILGSSSKARREILSEMGYEFTVMTADIDEKCIRREKPEDLVMALAEAKADAIVQRLPTGGPLEEDASTTLLITADTVVVYRGVIREKPTSEKEARDFIKGYSGSHAAVVGSVVVTNLATGKRCGGWDSAEVYFLEIPDEVIDNLIDEGITFNVAGGLMLEHPLTLPFVDAVVGSTDTVMGLSKALTEKLLLEAL*

>Glyma.16g139500.2.p sequence-type=predicted peptide transcript=Glyma.16g139500.2 locus=Glyma.16g139500 ID=Glyma.16g139500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATKNPPFKIILGSSSKARREILSEMGYEFTVMTADIDEKCIRREKPEDLVMALAEAKADAIVQRLPTGGPLEEDASTTLLITADTVVVYRGVIREKPTSEKEARDFIKGYSGSHAAVVGSVVVTNLATGKRCGGWDSAEVYFLEIPDEVIDNLEILVQLNTI*

>Glyma.16g139500.3.p sequence-type=predicted peptide transcript=Glyma.16g139500.3 locus=Glyma.16g139500 ID=Glyma.16g139500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATKNPPFKIILGSSSKARREILSEMGYEFTVMTADIDEKCIRREKPEDLVMALAEAKADAIVQRLPTGGPLEEDASTTLLITADTVVVYRGVIREKPTSEKEARDFIKGYSGSHAAVVGSVVVTNLATGKRCGGWDSAEEILVQLNTI*

>Glyma.16g139500.4.p sequence-type=predicted peptide transcript=Glyma.16g139500.4 locus=Glyma.16g139500 ID=Glyma.16g139500.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATKNPPFKIILGSSSKARREILSEMGYEFTVMTADIDEKCIRREKPEDLVMALAEAKADAIVQRLPTGGPLEEDASTTLLITADTVVVYRGVIREKPTSEKEARDFIKGYSGSHAAVVGSVVVTNLATGKRCGGWDSAEVYFLEIPDEVIDNLVNFLEVHFSPLH*

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