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Report for Sequence Feature Glyma.16g134900

Feature Type:gene_model
Chromosome:Gm16
Start:29214758
stop:29219443
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.16g134900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G66470.1AT RNA binding;GTP binding JGI N/AIEA
GO:0007264GO-bp small GTPase mediated signal transduction JGI N/AIEA
GO:0015684GO-bp ferrous iron transport JGI N/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding JGI N/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding JGI N/AIEA
GO:0003924GO-mf GTPase activity JGI N/AIEA
GO:0005525GO-mf GTP binding EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding JGI N/AIEA
GO:0015093GO-mf ferrous iron transmembrane transporter activity JGI N/AIEA
KOG1423 KOG Ras-like GTPase ERA JGI N/AIEA
PTHR11649Panther MSS1/TRME-RELATED GTP-BINDING PROTEIN JGI N/AIEA
PTHR11649:SF3Panther GTPASE ERA, MITOCHONDRIAL JGI N/AIEA
PF01926PFAM 50S ribosome-binding GTPase JGI N/AIEA
PF07650PFAM KH domain JGI N/AIEA

Expression Patterns of Glyma.16g134900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.16g134900 not represented in the dataset
Glyma.16g134900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.16g134900
ParalogEvidenceComments
Glyma.02g054500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.16g134900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma16g24870 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.16g134900
>Glyma.16g134900.2 sequence-type=transcript locus=Glyma.16g134900 ID=Glyma.16g134900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTATAACTTGGATAAAAAAAAGAAGCAGCGCAGCGGCATTGGCAATGGAGAAGCTCGCTTCTTCTTCTACTGCAACTGTTGTTCCCACTCAACACTTCCTTTTTCAATTTCACCAACATTCTCTTTTCTTCTTCCCCAAAACTGCGTTTTCCACCTTCCACCGGAACCGCACCGAACCGCTCTCACTGCCATGTTGCAAAAGCAGACACCGTCGCCTAGAAGCATTATCCAGCAAACAGGATCAACTCTGGGTCAGCGAAGAAGAATTGGAGCTAGAATTGGAAGAAGGAGAAGATTCGTATTTGGACGGTGATGATGACGACGACGACTCGTCGTTTTTGTCGCTCAGCGACAAGCCCGACAGGAACATGGCCATGCTCGACGATTACGAGGGCGAGGAGCTCGACTTTGATTACGGTCCCGACCACCGAAGCGGGTATGTGGCGTTACTTGGGAAGCCAAATGTTGGGAAGAGTACACTGGCGAACCAAATGCTAGGGCAAAAGTTGTCAATAGTTACAGATAAACCTCAAACGACGAGGCATCGGATTCTGTGTATATGTTCTGGCACGGATTATCAGATGATACTTTATGACACACCTGGTGTTCTACAGAAGGAAATGCACTTGTTAGACTCAATGATGATGAAAAACGTTCGCAGTGCTGCAGTTAATGCTGACTGTGTATTGGTTCTTGTCGATGCACGTAAAACTCCTGAAAAAATTGATGGACTGTTGGAAGAAGGCATAGGAGACCTCAAAGATAAGCCTCCCACTCTACTGATTCTAAACAAGAAGGACCTTGTTAAACCTGGTGAACTTGCAAAGAAACTTGAGTGGTATGAGAAATTTACTGAAGTTGATGAGGTTATACCTGTTAGTGCCAAATATGGTCAGGGGGTTGAAGATGTCAAGGACTGGATACTGTCAAAGCTTCCCAATGGACCAGCTTATTATCCAAAGGATATTGTCAGTGAGCATCCAGAGAGATTTTTTGTAGCTGAAATTGTTAGAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAGGTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATACAAGTAGAGATTTTGGTTGAGAAAAACACTCAGAAGATTATCCTTATTGGAAGAGAAGGAAAGGCTTTGAAACTGCTTGCAACAGCTGCCCGCCTTGATGTTGAAGATTTTTTACAGAAGAAAGTTTATCTTGAGATTGAAGTGAAGGTTAGAGCAAATTGGCGACAAGATGAAGGGCTTCTTAATCACTATGGTTATGGGGGCCAAATACGTGTTATATAATGTGAAGATGGaaaaaaaaaaagaaaaaacaaaTCATTAGGCATCTGGTATAAAATATGCATGTCAATCCTTATTTGGTAAATGTGAATGAAAAGATATGTTGAATGGAAAATTTAAGATATGGAAGCAATTTTCACATTAGCTTCTCTTTCCTTTCCCATCATATTTAATTACATTCATTTTCGTTTACGGTTGAACTGTAGGAATGAGAGTAATGAAGTAATGTTACTTATACATGAATTTATTACCCCATCTATTTCAGTCATAATATTTTGAAGGAAAAGCAAATTTTAGGCTTCGTCTATGTATTTTTTGGAAAGTAGGAACTCTAGTAGTTCATGTATAAACATAGTGTATGTAAACTGAGTTACTCTGTTGAAATTGTATGATAATCGTGCAGCCACTTTCCGGA

>Glyma.16g134900.3 sequence-type=transcript locus=Glyma.16g134900 ID=Glyma.16g134900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCAGCGCAGCGGCATTGGCAATGGAGAAGCTCGCTTCTTCTTCTACTGCAACTGTTGTTCCCACTCAACACTTCCTTTTTCAATTTCACCAACATTCTCTTTTCTTCTTCCCCAAAACTGCGTTTTCCACCTTCCACCGGAACCGCACCGAACCGCTCTCACTGCCATGTTGCAAAAGCAGACACCGTCGCCTAGAAGCATTATCCAGCAAACAGGATCAACTCTGGGTCAGCGAAGAAGAATTGGAGCTAGAATTGGAAGAAGGAGAAGATTCGTATTTGGACGGTGATGATGACGACGACGACTCGTCGTTTTTGTCGCTCAGCGACAAGCCCGACAGGAACATGGCCATGCTCGACGATTACGAGGGCGAGGAGCTCGACTTTGATTACGGTCCCGACCACCGAAGCGGGTATGTGGCGTTACTTGGGAAGCCAAATGTTGGGAAGAGTACACTGGCGAACCAAATGCTAGGGCAAAAGTTGTCAATAGTTACAGATAAACCTCAAACGACGAGGCATCGGATTCTGTGTATATGTTCTGGCACGGATTATCAGATGATACTTTATGACACACCTGGTGTTCTACAGAAGGAAATGCACTTGTTAGACTCAATGATGATGAAAAACGTTCGCAGTGCTGCAGTTAATGCTGACTGTGTATTGGTTCTTGTCGATGCACGTAAAACTCCTGAAAAAATTGATGGACTGTTGGAAGAAGGCATAGGAGACCTCAAAGATAAGCCTCCCACTCTACTGATTCTAAACAAGAAGGACCTTGTTAAACCTGGTGAACTTGCAAAGAAACTTGAGTGGTATGAGAAATTTACTGAAGTTGATGAGGTTATACCTGTTAGTGCCAAATATGGTCAGGGGGTTGAAGATGTCAAGGACTGGATACTGTCAAAGCTTCCCAATGGACCAGCTTATTATCCAAAGGATATTGTCAGTGAGCATCCAGAGAGATTTTTTGTAGCTGAAATTGTTAGAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAGGTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATACAAGTAGAGATTTTGGTTGAGAAAAACACTCAGAAGATTATCCTTATTGGAAGACATTTATCTGGTGAATATTAAAGACTGA
Coding sequences of Glyma.16g134900
>Glyma.16g134900.1 sequence-type=CDS polypeptide=Glyma.16g134900.1.p locus=Glyma.16g134900 ID=Glyma.16g134900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAAGCTCGCTTCTTCTTCTACTGCAACTGTTGTTCCCACTCAACACTTCCTTTTTCAATTTCACCAACATTCTCTTTTCTTCTTCCCCAAAACTGCGTTTTCCACCTTCCACCGGAACCGCACCGAACCGCTCTCACTGCCATGTTGCAAAAGCAGACACCGTCGCCTAGAAGCATTATCCAGCAAACAGGATCAACTCTGGGTCAGCGAAGAAGAATTGGAGCTAGAATTGGAAGAAGGAGAAGATTCGTATTTGGACGGTGATGATGACGACGACGACTCGTCGTTTTTGTCGCTCAGCGACAAGCCCGACAGGAACATGGCCATGCTCGACGATTACGAGGGCGAGGAGCTCGACTTTGATTACGGTCCCGACCACCGAAGCGGGTATGTGGCGTTACTTGGGAAGCCAAATGTTGGGAAGAGTACACTGGCGAACCAAATGCTAGGGCAAAAGTTGTCAATAGTTACAGATAAACCTCAAACGACGAGGCATCGGATTCTGTGTATATGTTCTGGCACGGATTATCAGATGATACTTTATGACACACCTGGTGTTCTACAGAAGGAAATGCACTTGTTAGACTCAATGATGATGAAAAACGTTCGCAGTGCTGCAGTTAATGCTGACTGTGTATTGGTTCTTGTCGATGCACGTAAAACTCCTGAAAAAATTGATGGACTGTTGGAAGAAGGCATAGGAGACCTCAAAGATAAGCCTCCCACTCTACTGATTCTAAACAAGAAGGACCTTGTTAAACCTGGTGAACTTGCAAAGAAACTTGAGTGGTATGAGAAATTTACTGAAGTTGATGAGGTTATACCTGTTAGTGCCAAATATGGTCAGGGGGTTGAAGATGTCAAGGACTGGATACTGTCAAAGCTTCCCAATGGACCAGCTTATTATCCAAAGGATATTGTCAGTGAGCATCCAGAGAGATTTTTTGTAGCTGAAATTGTTAGAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAGGTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATACAAGTAGAGATTTTGGTTGAGAAAAACACTCAGAAGATTATCCTTATTGGAAGAGAAGGAAAGGCTTTGAAACTGCTTGCAACAGCTGCCCGCCTTGATGTTGAAGATTTTTTACAGAAGAAAGTTTATCTTGAGATTGAAGTGAAGGTTAGAGCAAATTGGCGACAAGATGAAGGGCTTCTTAATCACTATGGTTATGGGGGCCAAATACGTGTTATATAA

>Glyma.16g134900.2 sequence-type=CDS polypeptide=Glyma.16g134900.2.p locus=Glyma.16g134900 ID=Glyma.16g134900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAAGCTCGCTTCTTCTTCTACTGCAACTGTTGTTCCCACTCAACACTTCCTTTTTCAATTTCACCAACATTCTCTTTTCTTCTTCCCCAAAACTGCGTTTTCCACCTTCCACCGGAACCGCACCGAACCGCTCTCACTGCCATGTTGCAAAAGCAGACACCGTCGCCTAGAAGCATTATCCAGCAAACAGGATCAACTCTGGGTCAGCGAAGAAGAATTGGAGCTAGAATTGGAAGAAGGAGAAGATTCGTATTTGGACGGTGATGATGACGACGACGACTCGTCGTTTTTGTCGCTCAGCGACAAGCCCGACAGGAACATGGCCATGCTCGACGATTACGAGGGCGAGGAGCTCGACTTTGATTACGGTCCCGACCACCGAAGCGGGTATGTGGCGTTACTTGGGAAGCCAAATGTTGGGAAGAGTACACTGGCGAACCAAATGCTAGGGCAAAAGTTGTCAATAGTTACAGATAAACCTCAAACGACGAGGCATCGGATTCTGTGTATATGTTCTGGCACGGATTATCAGATGATACTTTATGACACACCTGGTGTTCTACAGAAGGAAATGCACTTGTTAGACTCAATGATGATGAAAAACGTTCGCAGTGCTGCAGTTAATGCTGACTGTGTATTGGTTCTTGTCGATGCACGTAAAACTCCTGAAAAAATTGATGGACTGTTGGAAGAAGGCATAGGAGACCTCAAAGATAAGCCTCCCACTCTACTGATTCTAAACAAGAAGGACCTTGTTAAACCTGGTGAACTTGCAAAGAAACTTGAGTGGTATGAGAAATTTACTGAAGTTGATGAGGTTATACCTGTTAGTGCCAAATATGGTCAGGGGGTTGAAGATGTCAAGGACTGGATACTGTCAAAGCTTCCCAATGGACCAGCTTATTATCCAAAGGATATTGTCAGTGAGCATCCAGAGAGATTTTTTGTAGCTGAAATTGTTAGAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAGGTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATACAAGTAGAGATTTTGGTTGAGAAAAACACTCAGAAGATTATCCTTATTGGAAGAGAAGGAAAGGCTTTGAAACTGCTTGCAACAGCTGCCCGCCTTGATGTTGAAGATTTTTTACAGAAGAAAGTTTATCTTGAGATTGAAGTGAAGGTTAGAGCAAATTGGCGACAAGATGAAGGGCTTCTTAATCACTATGGTTATGGGGGCCAAATACGTGTTATATAA

>Glyma.16g134900.3 sequence-type=CDS polypeptide=Glyma.16g134900.3.p locus=Glyma.16g134900 ID=Glyma.16g134900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAAGCTCGCTTCTTCTTCTACTGCAACTGTTGTTCCCACTCAACACTTCCTTTTTCAATTTCACCAACATTCTCTTTTCTTCTTCCCCAAAACTGCGTTTTCCACCTTCCACCGGAACCGCACCGAACCGCTCTCACTGCCATGTTGCAAAAGCAGACACCGTCGCCTAGAAGCATTATCCAGCAAACAGGATCAACTCTGGGTCAGCGAAGAAGAATTGGAGCTAGAATTGGAAGAAGGAGAAGATTCGTATTTGGACGGTGATGATGACGACGACGACTCGTCGTTTTTGTCGCTCAGCGACAAGCCCGACAGGAACATGGCCATGCTCGACGATTACGAGGGCGAGGAGCTCGACTTTGATTACGGTCCCGACCACCGAAGCGGGTATGTGGCGTTACTTGGGAAGCCAAATGTTGGGAAGAGTACACTGGCGAACCAAATGCTAGGGCAAAAGTTGTCAATAGTTACAGATAAACCTCAAACGACGAGGCATCGGATTCTGTGTATATGTTCTGGCACGGATTATCAGATGATACTTTATGACACACCTGGTGTTCTACAGAAGGAAATGCACTTGTTAGACTCAATGATGATGAAAAACGTTCGCAGTGCTGCAGTTAATGCTGACTGTGTATTGGTTCTTGTCGATGCACGTAAAACTCCTGAAAAAATTGATGGACTGTTGGAAGAAGGCATAGGAGACCTCAAAGATAAGCCTCCCACTCTACTGATTCTAAACAAGAAGGACCTTGTTAAACCTGGTGAACTTGCAAAGAAACTTGAGTGGTATGAGAAATTTACTGAAGTTGATGAGGTTATACCTGTTAGTGCCAAATATGGTCAGGGGGTTGAAGATGTCAAGGACTGGATACTGTCAAAGCTTCCCAATGGACCAGCTTATTATCCAAAGGATATTGTCAGTGAGCATCCAGAGAGATTTTTTGTAGCTGAAATTGTTAGAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAGGTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATACAAGTAGAGATTTTGGTTGAGAAAAACACTCAGAAGATTATCCTTATTGGAAGACATTTATCTGGTGAATATTAA
Predicted protein sequences of Glyma.16g134900
>Glyma.16g134900.1.p sequence-type=predicted peptide transcript=Glyma.16g134900.1 locus=Glyma.16g134900 ID=Glyma.16g134900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEKLASSSTATVVPTQHFLFQFHQHSLFFFPKTAFSTFHRNRTEPLSLPCCKSRHRRLEALSSKQDQLWVSEEELELELEEGEDSYLDGDDDDDDSSFLSLSDKPDRNMAMLDDYEGEELDFDYGPDHRSGYVALLGKPNVGKSTLANQMLGQKLSIVTDKPQTTRHRILCICSGTDYQMILYDTPGVLQKEMHLLDSMMMKNVRSAAVNADCVLVLVDARKTPEKIDGLLEEGIGDLKDKPPTLLILNKKDLVKPGELAKKLEWYEKFTEVDEVIPVSAKYGQGVEDVKDWILSKLPNGPAYYPKDIVSEHPERFFVAEIVREKIFMQYRNEIPYACQVNVVNYKARPNAKEYIQVEILVEKNTQKIILIGREGKALKLLATAARLDVEDFLQKKVYLEIEVKVRANWRQDEGLLNHYGYGGQIRVI*

>Glyma.16g134900.2.p sequence-type=predicted peptide transcript=Glyma.16g134900.2 locus=Glyma.16g134900 ID=Glyma.16g134900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEKLASSSTATVVPTQHFLFQFHQHSLFFFPKTAFSTFHRNRTEPLSLPCCKSRHRRLEALSSKQDQLWVSEEELELELEEGEDSYLDGDDDDDDSSFLSLSDKPDRNMAMLDDYEGEELDFDYGPDHRSGYVALLGKPNVGKSTLANQMLGQKLSIVTDKPQTTRHRILCICSGTDYQMILYDTPGVLQKEMHLLDSMMMKNVRSAAVNADCVLVLVDARKTPEKIDGLLEEGIGDLKDKPPTLLILNKKDLVKPGELAKKLEWYEKFTEVDEVIPVSAKYGQGVEDVKDWILSKLPNGPAYYPKDIVSEHPERFFVAEIVREKIFMQYRNEIPYACQVNVVNYKARPNAKEYIQVEILVEKNTQKIILIGREGKALKLLATAARLDVEDFLQKKVYLEIEVKVRANWRQDEGLLNHYGYGGQIRVI*

>Glyma.16g134900.3.p sequence-type=predicted peptide transcript=Glyma.16g134900.3 locus=Glyma.16g134900 ID=Glyma.16g134900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEKLASSSTATVVPTQHFLFQFHQHSLFFFPKTAFSTFHRNRTEPLSLPCCKSRHRRLEALSSKQDQLWVSEEELELELEEGEDSYLDGDDDDDDSSFLSLSDKPDRNMAMLDDYEGEELDFDYGPDHRSGYVALLGKPNVGKSTLANQMLGQKLSIVTDKPQTTRHRILCICSGTDYQMILYDTPGVLQKEMHLLDSMMMKNVRSAAVNADCVLVLVDARKTPEKIDGLLEEGIGDLKDKPPTLLILNKKDLVKPGELAKKLEWYEKFTEVDEVIPVSAKYGQGVEDVKDWILSKLPNGPAYYPKDIVSEHPERFFVAEIVREKIFMQYRNEIPYACQVNVVNYKARPNAKEYIQVEILVEKNTQKIILIGRHLSGEY*






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