SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.16g129700

Feature Type:gene_model
Chromosome:Gm16
Start:28275427
stop:28277324
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.16g129700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G36130.1AT Ribosomal protein L2 family JGI N/AIEA
GO:0002181GO-bp cytoplasmic translation EnsemblGenomesN/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006412GO-bp translation JGI N/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005840GO-cc ribosome EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome JGI N/AIEA
GO:0015934GO-cc large ribosomal subunit EnsemblGenomesN/AIEA
GO:0022625GO-cc cytosolic large ribosomal subunit EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome JGI N/AIEA
KOG2309 KOG 60s ribosomal protein L2/L8 JGI N/AIEA
PTHR13691Panther RIBOSOMAL PROTEIN L2 JGI N/AIEA
PTHR13691:SF4Panther SUBFAMILY NOT NAMED JGI N/AIEA
PF00181PFAM Ribosomal Proteins L2, RNA binding domain JGI N/AIEA
PF03947PFAM Ribosomal Proteins L2, C-terminal domain JGI N/AIEA

Expression Patterns of Glyma.16g129700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.16g129700
ParalogEvidenceComments
Glyma.02g049300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.16g129700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma16g24120 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.16g129700
>Glyma.16g129700.1 sequence-type=CDS polypeptide=Glyma.16g129700.1.p locus=Glyma.16g129700 ID=Glyma.16g129700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGACGTGTGATCCGTGCGCAGCGTAAGGGAGCAGGCTCGGTCTTCAAGTCCCACACGCACCACCGCAAGGGCCCTGCACGCTTCCGGAGCCTGGACTTCGGGGAGCGCAACGGCTACCTCAAGGGCGTGGTCACCGACGTCATCCATGACCCTGGCCGCGGCGCGCCGCTCGCCAAGGTCGCCTTCCGCCACCCTTTCAGATACAAGAAGCAGAACGAGCTCTTCATTGCCGCCGAGGGCCTCTACACCGGTCAGTTCATCTACTGCGGCAAGAAGGCCACCCTTGTTGTCGGGAACGTTCTACCCCTGAGGTCCATCCCCGAAGGAGCCGTCATCTGCAACGTCGAGCATCACGTCGGCGACCGCGGCGTCTTTGCCCGGGCGTCTGGCGACTACGCCATTGTTATCAGTCACAACCCTGATAATGACACCTCTAGGATTAAACTCCCATCTGGTTCAAAAAAGATTGTTCCTAGTGACTGTAGGGCCATGATTGGGCAAGTTGCAGGTGGAGGGAGAACTGAGAAGCCTCTTCTCAAGGCTGGAAATGCTTACCACAAGTTTAGAGTGAAGAGGAACTGCTGGCCCAAGGTTCGTGGTGTTGCTATGAACCCTGTTGAGCATCCCCACGGAGGAGGTAACCACCAGCATATCGGTCATGCTAGTACTGTCAGGCGTGATGCTCCTCCTGGACAGAAGGTTGGTCTCATTGCCGCAAGGAGGACTGGTCGTCTTAGGGGACAAGCTGCTGCAACTGCTGCTAAGGCTGATAAGGCTTAA
Predicted protein sequences of Glyma.16g129700
>Glyma.16g129700.1.p sequence-type=predicted peptide transcript=Glyma.16g129700.1 locus=Glyma.16g129700 ID=Glyma.16g129700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVAFRHPFRYKKQNELFIAAEGLYTGQFIYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDNDTSRIKLPSGSKKIVPSDCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAATAAKADKA*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo