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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G19180.1 | AT | GDA1/CD39 nucleoside phosphatase family protein | JGI | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | JGI | N/A | IEA |
| KOG1386 | KOG | Nucleoside phosphatase | JGI | N/A | IEA |
| PTHR11782 | Panther | ADENOSINE/GUANOSINE DIPHOSPHATASE | JGI | N/A | IEA |
| PTHR11782:SF3 | Panther | APYRASE 7-RELATED | JGI | N/A | IEA |
| PF01150 | PFAM | GDA1/CD39 (nucleoside phosphatase) family | JGI | N/A | IEA |
| PWY-5687 | SoyCyc9 | pyrimidine ribonucleotides interconversion | Plant Metabolic Network | ISS | |
| PWY-7177 | SoyCyc9 | UTP and CTP dephosphorylation II | Plant Metabolic Network | ISS | |
| PWY-7184 | SoyCyc9 | pyrimidine deoxyribonucleotides de novo biosynthesis I | Plant Metabolic Network | ISS | |
| PWY-7185 | SoyCyc9 | UTP and CTP dephosphorylation I | Plant Metabolic Network | ISS | |
| PWY-7211 | SoyCyc9 | superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis | Plant Metabolic Network | ISS | |
| PWY0-166 | SoyCyc9 | superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) | Plant Metabolic Network | ISS | |
| GN7V-59884 | SoyCyc9-rxn | apyrase | Plant Metabolic Network | ISS |
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Glyma.16g110400 not represented in the dataset |
Glyma.16g110400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma16g21210 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.16g110400.1 sequence-type=CDS polypeptide=Glyma.16g110400.1.p locus=Glyma.16g110400 ID=Glyma.16g110400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTCTTTGGCAAACATCCAGGCGTCAAGAACCACCTCCGAATCTCCTCCTCCCTCCAAGATCTCTCCTCCTATCGCTACGACCTCGAACATGGCCCCACACCCAACAACTTCACTTCCAGTTTCTCCAAAACCAAACCGGTTCAACTCCCCAACCCGGTTCGCCGCAAACACCTCTTCCTCTTCCCGATCCTCATCCTCCTCCTCTTCCTCCTCCTCTTTTTCCTCTACACCCTCTACTCCCACCACTCCTCCCCCAAATACTACGTCGTTCTCGACTGCGGCAGCACCGGGACACGTGTCTACGTCTACAGAGCCCAAATCCAACACAATGACAAAAAAACCACCCTCCCTATCTCCATCCAATCACTAAAAGACGGCTTGCGCAAGAACCCTTCAAGCGGCCGCGCCTACGACCGCATGGAAACCGAACCGGGTCTCGACAAACTGCTCCACAACCGAACCGGTTTAAAAACCGCCCTCGTACCGCTTCTCAAATGGGCTCAGAAGCAGATTCCAGAAACTTCCCATAAAACCACTTCGCTTTTCCTCTACGCCACCGCAGGGGTTCGGAGACTCCCCTTCGACGATTCGAAATGGCTGCTCGACAACGCGTGGAGCTTTTTGAAGAGCTCTTCGCCGTTCGTGTGCAAGAGGGATTGGGTCAAGATCATTTCGGGGACCGAAGAGGCTTACTTTGGATGGATTGCGCTTAATTACGATTCCGGGATTCTTGGGGTTAAGCCGAGGAGAGAAACATACGGTGCTCTTGATTTGGGAGGGTCTTCATTGCAGGTCACGTTTGAGGGGAATAGCAATAAAGAGCCGCAACATTTGTTCAATAGTGAGACTAGTTTGTATGTTAGGATTGGGTCTGTGAACCATCATTTGACGGCTTATTCACTCGCGGGGTATGGCCTCAATGAGGCATTTGATAAGTCTGTTGCTCATGTTTTTAAGGAGTTTGGGTATGGTATGGAGGATGTTGTTAAGGGGAATTTGGAGGTTAAGCATCCCTGCTTGCAAATCGGGTACAAGGAGAGGTATTCGTGCTCACATTGTTCTTCTGCTGTGAAGAAAGGAGGGGAGAGTCTGATGGTTGAGGGAAATGGGAATGTGGTGGGGAAGAAGGAGGGAGGATCAAGGACTGTGGTGACGCTTGTTGGCGCCCCAAATTGGTTGAAGTGTAGCACGCTGGCGAAGGTTGCCGTGAATTTGTCTGAGTGGAGTGATGTTAGGCCTGGGCTGGATTGTGAGGTTCACCCGTGTGCCCTTCGTGGTAATTTGCCCCAGCCAATGGGGCACTTTTATGTGATTTCTGGGTTCTTTGTGGTGTATCGGTTTTTCAATTTGACTGCTGAGGCCACGCTTGAGGATGTGTTGGAGAAGGGGAGGGAGTTCTGTGATAAGAGATGGGATGTTGCGAGGAAGAGTGTTGCCCCTCAGCCGTTTATTGAGCAGTATTGCTTCAGAGCACCATATATTGCATCGTTGCTGAGGGAGGGTTTGCACATTACTGATAAGCATATAACTGTTGGCTCTGGAAGCATAACTTGGACTCTTGGGGTGGCCTTGTTGGAAGCTGGGAAGGCGTATTCGGTTAGGTTTGGACTCCGTGGTTTTTACTTGCTTCAGATGAAGATGAATCCGCTTATTCTTATTCCCATTTTGATACTTTCTTTCATTCTTCTGCTTTGTGCTTTGTCGTGGGTTGTCAATTGGATGCCAAGATTTTTCCGGAGACAGTATCTTCCATTTTTCAGGCATAACAGTGCGTCCAGTGCATCTGGTATTAATATCCCATCTCCTTTCCGGTTTCAGCGGTGGAGTCCTATGAATTCTGGAGATGGAAGAACAAAGACCCCACTCAGCCCAACAATTGCAGGTTCACAGGATAGACCGTTTAGCCTGGGGCATGGCCTTAGTGATAACAGTGGAAACATCCAGCTGATGGAATCTTCCTTTCACCCATCAGCTAGTAGTGTCTCACATAGTTATTCCTCGAACAATTTAGGGCAGATGCAGTTCGACAGCAGTAGTATAGGGGCATTCTGGTCACCTCACAGAAGTCAGATGCATCTGCAGAGTAGAAGATCTCAATCTCGAGAAGACCTGAATTCTTCATTGGCTGAGACACACATGGTGAAGGCTTAG
>Glyma.16g110400.1.p sequence-type=predicted peptide transcript=Glyma.16g110400.1 locus=Glyma.16g110400 ID=Glyma.16g110400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVFGKHPGVKNHLRISSSLQDLSSYRYDLEHGPTPNNFTSSFSKTKPVQLPNPVRRKHLFLFPILILLLFLLLFFLYTLYSHHSSPKYYVVLDCGSTGTRVYVYRAQIQHNDKKTTLPISIQSLKDGLRKNPSSGRAYDRMETEPGLDKLLHNRTGLKTALVPLLKWAQKQIPETSHKTTSLFLYATAGVRRLPFDDSKWLLDNAWSFLKSSSPFVCKRDWVKIISGTEEAYFGWIALNYDSGILGVKPRRETYGALDLGGSSLQVTFEGNSNKEPQHLFNSETSLYVRIGSVNHHLTAYSLAGYGLNEAFDKSVAHVFKEFGYGMEDVVKGNLEVKHPCLQIGYKERYSCSHCSSAVKKGGESLMVEGNGNVVGKKEGGSRTVVTLVGAPNWLKCSTLAKVAVNLSEWSDVRPGLDCEVHPCALRGNLPQPMGHFYVISGFFVVYRFFNLTAEATLEDVLEKGREFCDKRWDVARKSVAPQPFIEQYCFRAPYIASLLREGLHITDKHITVGSGSITWTLGVALLEAGKAYSVRFGLRGFYLLQMKMNPLILIPILILSFILLLCALSWVVNWMPRFFRRQYLPFFRHNSASSASGINIPSPFRFQRWSPMNSGDGRTKTPLSPTIAGSQDRPFSLGHGLSDNSGNIQLMESSFHPSASSVSHSYSSNNLGQMQFDSSSIGAFWSPHRSQMHLQSRRSQSREDLNSSLAETHMVKA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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