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Report for Sequence Feature Glyma.16g108100

Feature Type:gene_model
Chromosome:Gm16
Start:21973746
stop:21974810
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.16g108100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G32520.1AT serine hydroxymethyltransferase 3 JGI N/AIEA
GO:0006544GO-bp glycine metabolic process JGI N/AIEA
GO:0006563GO-bp L-serine metabolic process JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0004372GO-mf glycine hydroxymethyltransferase activity JGI N/AIEA
PTHR11680Panther SERINE HYDROXYMETHYLTRANSFERASE JGI N/AIEA
PF00464PFAM Serine hydroxymethyltransferase JGI N/AIEA
GLYSYN2-PWYSoyCyc9 glycine biosynthesis Plant Metabolic Network ISS
PWY-181SoyCyc9 photorespiration Plant Metabolic Network ISS
PWY-2161SoyCyc9 folate polyglutamylation Plant Metabolic Network ISS
PWY-3841SoyCyc9 folate transformations II Plant Metabolic Network ISS
GN7V-41277SoyCyc9-rxn glycine hydroxymethyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.16g108100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.16g108100 not represented in the dataset
Glyma.16g108100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.16g108100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma16g17060 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.16g108100
>Glyma.16g108100.1 sequence-type=CDS polypeptide=Glyma.16g108100.1.p locus=Glyma.16g108100 ID=Glyma.16g108100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTATTTGAATTTATGACTAAGAATGATCTATTTTGTCCATGGAATCACATGCAATTGCAAATACTAGGTGATGGAAGTAGCTTCCTAGACTATGGCTTGAGTGAAGCTGATCCTGAAGTTCGCGCAATTATTGACAAGGAAAAGGACCGGCAATTTAAAAGTCTTGAGCTTATTGCTTCTGAGAATTTTACATCTAGAGCAGTGATGGAAGCAGTTGGTTCCTGCCTCACAAATAAATACTCAGAAGGATTGCCGGGTAAAAGGTACTATGGTGGCAATGAGTACATTGATGAGCTTGAAACCCTATGTCAACAAAGGGCTTTGGCTACATTTCATGTAGATGGAAATAAGTGGGGTGTTAATGTTCAAGCTTTATCTAGTTCCCCAGCTAATTTTGCAGTATTCACTGCAGGTTTGGACTTGCCTCACGGAGGACATTTGTCTCATGGGTTCGTGACACCTAAAAAACGTGTATCAGCCACATCAATTTATTTTGAATGTCTTATTGATTATGATATGCTGGAGAAAATTACTACTCTTTTTCGACCAAAACTCATTATTGTTGGTGCCAGTGCTTATCCTCGAGACATTGACTACCCTTGCATGAGAAAAGTATGTTTTGTACTTATGCATTTTCTGGAATTATAA
Predicted protein sequences of Glyma.16g108100
>Glyma.16g108100.1.p sequence-type=predicted peptide transcript=Glyma.16g108100.1 locus=Glyma.16g108100 ID=Glyma.16g108100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLFEFMTKNDLFCPWNHMQLQILGDGSSFLDYGLSEADPEVRAIIDKEKDRQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEYIDELETLCQQRALATFHVDGNKWGVNVQALSSSPANFAVFTAGLDLPHGGHLSHGFVTPKKRVSATSIYFECLIDYDMLEKITTLFRPKLIIVGASAYPRDIDYPCMRKVCFVLMHFLEL*






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