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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G18070.1 | AT | phosphoglucosamine mutase-related | JGI | N/A | IEA |
| GO:0005975 | GO-bp | carbohydrate metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0005975 | GO-bp | carbohydrate metabolic process | JGI | N/A | IEA |
| GO:0006048 | GO-bp | UDP-N-acetylglucosamine biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0071704 | GO-bp | organic substance metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0004610 | GO-mf | phosphoacetylglucosamine mutase activity | EnsemblGenomes | N/A | IEA |
| GO:0016868 | GO-mf | intramolecular transferase activity, phosphotransferases | EnsemblGenomes | N/A | IEA |
| GO:0016868 | GO-mf | intramolecular transferase activity, phosphotransferases | JGI | N/A | IEA |
| KOG2537 | KOG | Phosphoglucomutase/phosphomannomutase | JGI | N/A | IEA |
| PTHR22573 | Panther | PHOSPHOHEXOMUTASE FAMILY MEMBER | JGI | N/A | IEA |
| PTHR22573:SF3 | Panther | JGI | N/A | IEA | |
| PF02878 | PFAM | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I | JGI | N/A | IEA |
| PF02880 | PFAM | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III | JGI | N/A | IEA |
| UDPNACETYLGALSYN-PWY | SoyCyc9 | UDP-N-acetyl-D-glucosamine biosynthesis II | Plant Metabolic Network | ISS | |
| GN7V-62612 | SoyCyc9-rxn | phosphoacetylglucosamine mutase | Plant Metabolic Network | ISS |
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Glyma.16g093300 not represented in the dataset |
Glyma.16g093300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma16g13610 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.16g093300.1 sequence-type=CDS polypeptide=Glyma.16g093300.1.p locus=Glyma.16g093300 ID=Glyma.16g093300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAACGAAGAACAACAGTGTTTGCTTCTCAGCTCAGCTTCTCACTTTTGGCCCCCCAAAGGAGTGAAGCTATCGTACGGCACTGGGGGCTTCAGAGCCGATGCATCACTTCTCCAATCGACGGTGTACAGAGTGGGAATCCTTGCAGCCCTTAGATCGCTCAAGACTCGCTCCGTCATTGGTCTCATGATCACCGCCTCACACAACAAAGTCTCCGATAATGGAGTCAAAATCGCTTACGCAAGTGGCGGCATGCTCTCTCAGCATTGGGAACCCTTCGTCGACGCCCTCGCCAACGCCCCTTCTCCCCAACACCTCCTCCTGTTGATAAATGAATTCGTGGAGAAAGAAGGAATCTCGGTGGATGGGGACTGGCAAGTCGAAGTGCTTTTGGGGAGAGACACGAGACCAAGTGGAGAGATGCTTTGCTTCAAGCAGCTAAACAGGCATGAGCAAGTTGGGTTGAAGACAACCAAACACCCCAAAAATCGTGACGTTGTGGCTGAAATCACTGGTGTCACTTCAATTGTTGGAGCTGTTGCGACGGATATGGGAATCTTGACAACTCCACAATTGCATTGGATGGTTCGTGCTAGAAATAAGGGTATGAAAGCTTCAGAGCAGGATTACTTTGAACAGCTTTCAAGCTCATTCAGGTGCTTAGTGGATTTGATCCCAGCTGAAAAATGTAAGTTTGATGGGGTGAACGACAAAGTGGTCGTGGATGGATCTAATGGGGTTCGAAACAGCAGTGAAGATGGAGGAGTACTGAATGATGGAGTTGGTGCTGATTATGTGCAAAAAGAGAAGGTTCTTCCAAACAACTTTGGTTCTAAAGACACTGGGATAAGGTGTGTTAGTTTGGATGGAGATGCTGATCGGCTTGTTTATTTTATTGTGCCACCTAAAAGCAGTGGTAGGATTGACCTTGTTGATGGGGACAAGATACTATCCCTGTTTGCCTTATTTATTAGGGAGCAACTAAGCTTTCTTAATGAGAAAGAAGACATGAAAAATTGCCACCAAGCCCATGTTGGTGTCATACAGACTGCTTATGCAAATGGGGCATCTACTAATTACCTTAAACTGTTGGGACTTGAAGTCAATTTTACTCCAACTGGAGTGAAATATCTGCATGAAAAAGCCACCGAATTTGATATTGGTATCTACTTTGAGGCAAATGGCCATGGAACTGTCTTATTTTCAGAATCTTTCATAGAGTCGTTGGAGGCTAGAACTAATGAGATTTCTTTAGGATCCAAAGGTTCAGAAGGGGAAAAAGCTGCTCTGAGATTATTGGCTCTTAGTAAGTTGATCAATCAAGCTGTTGGAGATGCTTTGAGTGGATTTCTCTTGGTGGAAGTCATATTACAGCATATGGGATGGTCAATAAATAAATGGAATGAACTTTATCATGATTTACCCAGCAAGCAGCTCAAGGTCAAAGTTGCTGACAGAACGGCTGTTTTGGTAGCCTTTTTTTCAGAAGGCAACAGTGCATTGTCACTGTCATAG
>Glyma.16g093300.1.p sequence-type=predicted peptide transcript=Glyma.16g093300.1 locus=Glyma.16g093300 ID=Glyma.16g093300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MNEEQQCLLLSSASHFWPPKGVKLSYGTGGFRADASLLQSTVYRVGILAALRSLKTRSVIGLMITASHNKVSDNGVKIAYASGGMLSQHWEPFVDALANAPSPQHLLLLINEFVEKEGISVDGDWQVEVLLGRDTRPSGEMLCFKQLNRHEQVGLKTTKHPKNRDVVAEITGVTSIVGAVATDMGILTTPQLHWMVRARNKGMKASEQDYFEQLSSSFRCLVDLIPAEKCKFDGVNDKVVVDGSNGVRNSSEDGGVLNDGVGADYVQKEKVLPNNFGSKDTGIRCVSLDGDADRLVYFIVPPKSSGRIDLVDGDKILSLFALFIREQLSFLNEKEDMKNCHQAHVGVIQTAYANGASTNYLKLLGLEVNFTPTGVKYLHEKATEFDIGIYFEANGHGTVLFSESFIESLEARTNEISLGSKGSEGEKAALRLLALSKLINQAVGDALSGFLLVEVILQHMGWSINKWNELYHDLPSKQLKVKVADRTAVLVAFFSEGNSALSLS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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