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Report for Sequence Feature Glyma.16g092700

Feature Type:gene_model
Chromosome:Gm16
Start:14788515
stop:14792629
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.16g092700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G17609.2AT HY5-homolog JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0000977GO-mf RNA polymerase II regulatory region sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0003700GO-mf sequence-specific DNA binding transcription factor activity JGI N/AIEA
GO:0043565GO-mf sequence-specific DNA binding JGI N/AIEA
PTHR13301Panther X-BOX TRANSCRIPTION FACTOR-RELATED JGI N/AIEA
PTHR13301:SF30Panther CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 2 [UDP-FORMING]-RELATED JGI N/AIEA
PF07716PFAM Basic region leucine zipper JGI N/AIEA

Proteins Associated with Glyma.16g092700
LocusGene SymbolProtein Name
BZIP69 bZIP transcription factor bZIP69
bZIP131 Basic leucine zipper transcription factor-like protein gene 131

Expression Patterns of Glyma.16g092700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.16g092700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma16g13570 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.16g092700
>Glyma.16g092700.2 sequence-type=transcript locus=Glyma.16g092700 ID=Glyma.16g092700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATGGTGTTAGGAAAGGGGCGGTTCTGTGTACATCAACGTGTTCATTTGTGAACCAAACTTTTTGGCCCCATTCCCATGTTTCATCGTCAATGGTTTTGGGATGAGATGGTTCCATCCAAGACTTCATGGCCCCATCTTGCACACACACACGTACTAGTACTACACATTTACACTTTTTTCCTTCGTTAAAAAATCCCTTTGTTGTTGAGAAGGAAAAAAATAGCTACCCTTCAGAGCAAAGAAAGAGAGAAAAAAATGTCTCTTCCAAGACCCAGTGAGGGTAAAGCCCCTTCTCAGCTGAAAGAAGGAGTAGCACCTGCTGCTGCTGCAGCCTCATCCTCTTCTTCATGGAATAATAGGCTACACACTTTCCCTCCTTTGTCTCTACACAACAAGAGTAGCAAAATTGACAGTGATGAAGATATGTTCACAGTTCCTGATGTGGAAACCACACCAGTTAGTGTTCATTCTGCAGCGACTCTTCAAAATAGTAACCTTACTCAACGTAATGTGACAGACCCTCAATTTCAAACTGGCTTTCCTGGAAAGCGCCGCAGGGGAAGAAACCCTGCAGATAAGGAACATAGACGCCTCAAGAGGTTGTTGCGAAACAGGGTCTCTGCCCAACAAGCCCGCGAAAGAAAGAAGGTTTATGTGAATGACTTGGAATCAAGAGCTAAAGAGTTGCAAGATAAAAACGCTATCTTAGAAGAACGTATCTCTACTTTAATCAATGAGAACACCATGCTGCGGAAGGTTCTTATGAACGCGAGGCCAAAAACTGATGATAGCATTGAACAAAAGCAAGACCAGTTAAGTAAGAGCTAACAAGCAAAGCTAGAGGGTGCGTCAAAGTAAGGCATTCAAGAGATGCATTTATGATTTATTTTAGACACTAGAAATTGTAAATTTATAAATATATGATTATTTTATTTCTTTACTCGTTATTATACTTCCCTCAAGACCATAGAGTTGAATTCAAAAAGAAACTTCATTGTGGTGTAAAATTTAATCCAGACTTTATATAAAAAGTCATTTGCAATCAGTAATTCTCAATTGAGCATGA
Coding sequences of Glyma.16g092700
>Glyma.16g092700.1 sequence-type=CDS polypeptide=Glyma.16g092700.1.p locus=Glyma.16g092700 ID=Glyma.16g092700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTCTTCCAAGACCCAGTGAGGGTAAAGCCCCTTCTCAGCTGAAAGAAGGAGTAGCACCTGCTGCTGCTGCAGCCTCATCCTCTTCTTCATGGAATAATAGGCTACACACTTTCCCTCCTTTGTCTCTACACAACAAGAGTAGCAAAATTGAAGACAGTGATGAAGATATGTTCACAGTTCCTGATGTGGAAACCACACCAGTTAGTGTTCATTCTGCAGCGACTCTTCAAAATAGTAACCTTACTCAACGTAATGTGACAGACCCTCAATTTCAAACTGGCTTTCCTGGAAAGCGCCGCAGGGGAAGAAACCCTGCAGATAAGGAACATAGACGCCTCAAGAGGTTGTTGCGAAACAGGGTCTCTGCCCAACAAGCCCGCGAAAGAAAGAAGGTTTATGTGAATGACTTGGAATCAAGAGCTAAAGAGTTGCAAGATAAAAACGCTATCTTAGAAGAACGTATCTCTACTTTAATCAATGAGAACACCATGCTGCGGAAGGTTCTTATGAACGCGAGGCCAAAAACTGATGATAGCATTGAACAAAAGCAAGACCAGTTAAGTAAGAGCTAA

>Glyma.16g092700.2 sequence-type=CDS polypeptide=Glyma.16g092700.2.p locus=Glyma.16g092700 ID=Glyma.16g092700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTCTTCCAAGACCCAGTGAGGGTAAAGCCCCTTCTCAGCTGAAAGAAGGAGTAGCACCTGCTGCTGCTGCAGCCTCATCCTCTTCTTCATGGAATAATAGGCTACACACTTTCCCTCCTTTGTCTCTACACAACAAGAGTAGCAAAATTGACAGTGATGAAGATATGTTCACAGTTCCTGATGTGGAAACCACACCAGTTAGTGTTCATTCTGCAGCGACTCTTCAAAATAGTAACCTTACTCAACGTAATGTGACAGACCCTCAATTTCAAACTGGCTTTCCTGGAAAGCGCCGCAGGGGAAGAAACCCTGCAGATAAGGAACATAGACGCCTCAAGAGGTTGTTGCGAAACAGGGTCTCTGCCCAACAAGCCCGCGAAAGAAAGAAGGTTTATGTGAATGACTTGGAATCAAGAGCTAAAGAGTTGCAAGATAAAAACGCTATCTTAGAAGAACGTATCTCTACTTTAATCAATGAGAACACCATGCTGCGGAAGGTTCTTATGAACGCGAGGCCAAAAACTGATGATAGCATTGAACAAAAGCAAGACCAGTTAAGTAAGAGCTAA
Predicted protein sequences of Glyma.16g092700
>Glyma.16g092700.1.p sequence-type=predicted peptide transcript=Glyma.16g092700.1 locus=Glyma.16g092700 ID=Glyma.16g092700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSLPRPSEGKAPSQLKEGVAPAAAAASSSSSWNNRLHTFPPLSLHNKSSKIEDSDEDMFTVPDVETTPVSVHSAATLQNSNLTQRNVTDPQFQTGFPGKRRRGRNPADKEHRRLKRLLRNRVSAQQARERKKVYVNDLESRAKELQDKNAILEERISTLINENTMLRKVLMNARPKTDDSIEQKQDQLSKS*

>Glyma.16g092700.2.p sequence-type=predicted peptide transcript=Glyma.16g092700.2 locus=Glyma.16g092700 ID=Glyma.16g092700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSLPRPSEGKAPSQLKEGVAPAAAAASSSSSWNNRLHTFPPLSLHNKSSKIDSDEDMFTVPDVETTPVSVHSAATLQNSNLTQRNVTDPQFQTGFPGKRRRGRNPADKEHRRLKRLLRNRVSAQQARERKKVYVNDLESRAKELQDKNAILEERISTLINENTMLRKVLMNARPKTDDSIEQKQDQLSKS*






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