SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.16g090700

Feature Type:gene_model
Chromosome:Gm16
Start:13718454
stop:13723583
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.16g090700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G25070.1AT RPM1 interacting protein 4 JGI N/AIEA
PF05627PFAM Cleavage site for pathogenic type III effector avirulence factor Avr JGI N/AIEA

Proteins Associated with Glyma.16g090700
LocusGene SymbolProtein Name
RIN4B RPM1-interacting protein 4-like

Expression Patterns of Glyma.16g090700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.16g090700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma16g12160 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.16g090700
>Glyma.16g090700.1 sequence-type=CDS polypeptide=Glyma.16g090700.1.p locus=Glyma.16g090700 ID=Glyma.16g090700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCACAACGTTCTCATGTACCCAAATTTGGCAATTGGGATAGTGGAGAGAATGTTCCTTATACAGCATATTTTGACAAGGCACGGAAAGGTCGAACTGGCACAAGGATAATAAATCCAAATGACCCCGAGGAAAATGCTGATTTAAGTTTTGATAATCCATCATCTGATAACCTACCTCCTACCAGACCTAGAACTAATTCAGAGGATCAATCCGGAAAAGGATCACTGCATTTGGAAGATGATCCCAAGAATTTTATCGAATCTCCAGCTCGTCATGACAATGTAAGCAGTAGGAGTGGCAGTAGAAGCCATGGAGTAGGTTCTGCTGATAACCGTAGAAGACATTCAACGCAAAGTACTGGGTCTGAGTACAGCATTGAACGTTCACCGCTTCATCGCCAGGCTAGAGCCCCAGGCAGAGACAGTCCCCAGTGGGAACCAAAGAATTCATATGACAGCAGTCAGGGAACACCAGGAAGGTCTCGGTTAAGACCGGCTAATCGAGGAGATGAAACACCAGATAAAGGTGCAGCTGTTCCAAAGTTTGGTGACTGGGATGTGAATAACCCTGCATCAGCAGATGGCTTTACTCACATTTTCAACAAAGTGAGGGAGGAGAGACAAGGCGGGCCAGGACAAGTGCCAGGAACGCCTAATGAGAGACCACAACCTATTAATGGCCTATCTAATGATGACAAAGTCCAGTGTTGCTGCTTTGCGTGGGGTGGGAAAAAATGA
Predicted protein sequences of Glyma.16g090700
>Glyma.16g090700.1.p sequence-type=predicted peptide transcript=Glyma.16g090700.1 locus=Glyma.16g090700 ID=Glyma.16g090700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAQRSHVPKFGNWDSGENVPYTAYFDKARKGRTGTRIINPNDPEENADLSFDNPSSDNLPPTRPRTNSEDQSGKGSLHLEDDPKNFIESPARHDNVSSRSGSRSHGVGSADNRRRHSTQSTGSEYSIERSPLHRQARAPGRDSPQWEPKNSYDSSQGTPGRSRLRPANRGDETPDKGAAVPKFGDWDVNNPASADGFTHIFNKVREERQGGPGQVPGTPNERPQPINGLSNDDKVQCCCFAWGGKK*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo