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Report for Sequence Feature Glyma.16g089000

Feature Type:gene_model
Chromosome:Gm16
Start:11392112
stop:11400072
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.16g089000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G62790.1AT 1-deoxy-D-xylulose 5-phosphate reductoisomerase JGI N/AIEA
GO:0008299GO-bp isoprenoid biosynthetic process EnsemblGenomesN/AIEA
GO:0051484GO-bp isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0016853GO-mf isomerase activity EnsemblGenomesN/AIEA
GO:0030145GO-mf manganese ion binding EnsemblGenomesN/AIEA
GO:0030604GO-mf 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0070402GO-mf NADPH binding EnsemblGenomesN/AIEA
GO:0070402GO-mf NADPH binding JGI N/AIEA
PF02670PFAM 1-deoxy-D-xylulose 5-phosphate reductoisomerase JGI N/AIEA
PF08436PFAM 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal JGI N/AIEA
NONMEVIPP-PWYSoyCyc9 methylerythritol phosphate pathway I Plant Metabolic Network ISS
PWY-5121SoyCyc9 superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) Plant Metabolic Network ISS
PWY-7560SoyCyc9 methylerythritol phosphate pathway II Plant Metabolic Network ISS
GN7V-42877SoyCyc9-rxn 1-deoxy-D-xylulose-5-phosphate reductoisomerase Plant Metabolic Network ISS

Proteins Associated with Glyma.16g089000
LocusGene SymbolProtein Name
DXR2 putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Expression Patterns of Glyma.16g089000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.16g089000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma16g10880 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.16g089000
>Glyma.16g089000.2 sequence-type=transcript locus=Glyma.16g089000 ID=Glyma.16g089000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCTTACTTATTAATACTTTGATTGGTTCAATTTTTCATCCGTGAACATTTGAGACGTGGCTGGTTCAACTGAGGTGATGGCTTTGAATTTGCCTTCTCCCGCCCAAGTGAAGCCCTTATTTTTCTCTTCAAATAACTCCACAAAACTTCCAGGTAGCTTTTCTTTGAAGAGAAAAGATAGTGACACAACAGTAGAGAGACGAGTTTATTGCTCTGCCGCTGCTCAATCACCACCACCAGCATGGCCAGGAACAGCTATTCCCGAGCCTTCTGATTTCAAGACATGGGATGGGCAAAAACCTATTTCTGTCTTAGGATCTACGGGTTCAATTGGAACTCAGACACTGAGTATAGTGGCTGAGTTCCCAGAAAGATTTAAAGTTGTGAGCCTTGCTGCTGGCTCTAATATTACTCTTCTTGCTGACCAGATTAAAACATTTAAGCCTGAAGTTGTTGGTCTTAGAAATGAGTCTTTAATTGATGAACTCAAAGAGGCTTTGGCTGATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAGGCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAAGAGACAATGATTGCGGGAGCCCCTTTTGTTCTTCCTCTTGCTCACAAACATAACATAAAAATTCTTCCCGCTGATTCGGAACATTCTGCAATTTTTCAGTCTATCCAGGGGTTGCCAAAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGAGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAAGCATCCCATATGGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATATTGAGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAGGATTCATCTGTTATTGCACAGTTGGGGATACCTGACATGCGCTTACCGCTCCTTTATACATTATCTTGGCCAGAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAAGTATGGTTCTCTAACATTTTATGCACCGGATGACAAGAAGTTTCCATCGGTGAATCTTTGCTATGCTGCGGGACGTGCTGGAGGCACCATGACAGGAGTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAAATGTTTGTTGAAGAAAAGTAAGCACTATCTTAGCTATTTTTCTTATGCCAGTATTCCTCTTAGAATTTCACTGCATTTAGGTTTCCTTGGAGATCCATGTCATTCAACCAATGATACATCCCACCAAATCTCTTCTGTATATGGGAGAAGGATGCATCAGGAGTCAGGACTAACATAACATTTGATCATTTGGAATATAGTAATATAAATTAAAATTCCATTGTGGGATGATATTGAAATTTGATGGATTGGAATAGAATTACTAGTTAGTTATGCCGATGAAAATGTTTCCAGTCATGAAAAAGTCCAACCTAAAAAATAAATTTACAATTTCATTCTACTGCTATATTACATGGTTTTATCCATATAAACACATTTTTTTGTTTGAAAACCTGAAAACAGGTACTATTG

>Glyma.16g089000.3 sequence-type=transcript locus=Glyma.16g089000 ID=Glyma.16g089000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCAAAAGTTGTAATGTCTTGACTCATATATCTTGGGACTTCAATAGTGATGCTACTGAAAATAGTTGTGGATGGAACGCTCATTTAATTTTTCACAACTTATAGTCGGTCATTTATATAATGTAAAATTAGTAAGGACAGGTAGCTTTTCTTTGAAGAGAAAAGATAGTGACACAACAGTAGAGAGACGAGTTTATTGCTCTGCCGCTGCTCAATCACCACCACCAGCATGGCCAGGAACAGCTATTCCCGAGCCTTCTGATTTCAAGACATGGGATGGGCAAAAACCTATTTCTGTCTTAGGATCTACGGGTTCAATTGGAACTCAGACACTGAGTATAGTGGCTGAGTTCCCAGAAAGATTTAAAGTTGTGAGCCTTGCTGCTGGCTCTAATATTACTCTTCTTGCTGACCAGATTAAAACATTTAAGCCTGAAGTTGTTGGTCTTAGAAATGAGTCTTTAATTGATGAACTCAAAGAGGCTTTGGCTGATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAGGCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAAGAGACAATGATTGCGGGAGCCCCTTTTGTTCTTCCTCTTGCTCACAAACATAACATAAAAATTCTTCCCGCTGATTCGGAACATTCTGCAATTTTTCAGTCTATCCAGGGGTTGCCAAAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGAGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAAGCATCCCATATGGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATATTGAGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAGGATTCATCTGTTATTGCACAGTTGGGGATACCTGACATGCGCTTACCGCTCCTTTATACATTATCTTGGCCAGAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAAGTATGGTTCTCTAACATTTTATGCACCGGATGACAAGAAGTTTCCATCGGTGAATCTTTGCTATGCTGCGGGACGTGCTGGAGGCACCATGACAGGAGTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAAATGTTTGTTGAAGAAAAGATTAGTTATCTGGATATATTCAAGGTTGTGGAACTAACTTGTCAGGAACATCAAAAGGAATTAGTAGCATCTCCGTCACTCGAAGAAATTATTCACTATGACCAATGGGCTCGACAATATGCTGCTAGTCTGCAAAAAGCTTCAAGTGTTTGAATCCCATATTTCTGACATATTTTAGAAGTTGGGGCTGTGGTGGATTGTTGGCAACTGCTAGCATATTTTGTAAATGTATTTGTTGGTTCATCAATCTTGTAAAATGTAAAGGGGTAGCTATATAAAGTATATGTACTCCTAAAAGGGTTTCAATAAAAGTTCTAGCTTCAGAATACCATGTTTTGAGATGCTAATGCAACCTAGGCAGTACTTTTGTAATGCTATAATTTTCCTAATTGTGTGGTTAAGTGATTAATTCAAGATGCAAAGGAAATAAAATTTAAAATTATGTTATTCGATT
Coding sequences of Glyma.16g089000
>Glyma.16g089000.1 sequence-type=CDS polypeptide=Glyma.16g089000.1.p locus=Glyma.16g089000 ID=Glyma.16g089000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTTGAATTTGCCTTCTCCCGCCCAAGTGAAGCCCTTATTTTTCTCTTCAAATAACTCCACAAAACTTCCAGGTAGCTTTTCTTTGAAGAGAAAAGATAGTGACACAACAGTAGAGAGACGAGTTTATTGCTCTGCCGCTGCTCAATCACCACCACCAGCATGGCCAGGAACAGCTATTCCCGAGCCTTCTGATTTCAAGACATGGGATGGGCAAAAACCTATTTCTGTCTTAGGATCTACGGGTTCAATTGGAACTCAGACACTGAGTATAGTGGCTGAGTTCCCAGAAAGATTTAAAGTTGTGAGCCTTGCTGCTGGCTCTAATATTACTCTTCTTGCTGACCAGATTAAAACATTTAAGCCTGAAGTTGTTGGTCTTAGAAATGAGTCTTTAATTGATGAACTCAAAGAGGCTTTGGCTGATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAGGCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAAGAGACAATGATTGCGGGAGCCCCTTTTGTTCTTCCTCTTGCTCACAAACATAACATAAAAATTCTTCCCGCTGATTCGGAACATTCTGCAATTTTTCAGTCTATCCAGGGGTTGCCAAAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGAGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAAGCATCCCATATGGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATATTGAGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAGGATTCATCTGTTATTGCACAGTTGGGGATACCTGACATGCGCTTACCGCTCCTTTATACATTATCTTGGCCAGAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAAGTATGGTTCTCTAACATTTTATGCACCGGATGACAAGAAGTTTCCATCGGTGAATCTTTGCTATGCTGCGGGACGTGCTGGAGGCACCATGACAGGAGTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAAATGTTTGTTGAAGAAAAGATTAGTTATCTGGATATATTCAAGGTTGTGGAACTAACTTGTCAGGAACATCAAAAGGAATTAGTAGCATCTCCGTCACTCGAAGAAATTATTCACTATGACCAATGGGCTCGACAATATGCTGCTAGTCTGCAAAAAGCTTCAAGTGTTTGA

>Glyma.16g089000.2 sequence-type=CDS polypeptide=Glyma.16g089000.2.p locus=Glyma.16g089000 ID=Glyma.16g089000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTTGAATTTGCCTTCTCCCGCCCAAGTGAAGCCCTTATTTTTCTCTTCAAATAACTCCACAAAACTTCCAGGTAGCTTTTCTTTGAAGAGAAAAGATAGTGACACAACAGTAGAGAGACGAGTTTATTGCTCTGCCGCTGCTCAATCACCACCACCAGCATGGCCAGGAACAGCTATTCCCGAGCCTTCTGATTTCAAGACATGGGATGGGCAAAAACCTATTTCTGTCTTAGGATCTACGGGTTCAATTGGAACTCAGACACTGAGTATAGTGGCTGAGTTCCCAGAAAGATTTAAAGTTGTGAGCCTTGCTGCTGGCTCTAATATTACTCTTCTTGCTGACCAGATTAAAACATTTAAGCCTGAAGTTGTTGGTCTTAGAAATGAGTCTTTAATTGATGAACTCAAAGAGGCTTTGGCTGATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAGGCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAAGAGACAATGATTGCGGGAGCCCCTTTTGTTCTTCCTCTTGCTCACAAACATAACATAAAAATTCTTCCCGCTGATTCGGAACATTCTGCAATTTTTCAGTCTATCCAGGGGTTGCCAAAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGAGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAAGCATCCCATATGGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATATTGAGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAGGATTCATCTGTTATTGCACAGTTGGGGATACCTGACATGCGCTTACCGCTCCTTTATACATTATCTTGGCCAGAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAAGTATGGTTCTCTAACATTTTATGCACCGGATGACAAGAAGTTTCCATCGGTGAATCTTTGCTATGCTGCGGGACGTGCTGGAGGCACCATGACAGGAGTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAAATGTTTGTTGAAGAAAAGTAA

>Glyma.16g089000.3 sequence-type=CDS polypeptide=Glyma.16g089000.3.p locus=Glyma.16g089000 ID=Glyma.16g089000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAACGCTCATTTAATTTTTCACAACTTATAGTCGGTCATTTATATAATGTAAAATTAGTAAGGACAGGTAGCTTTTCTTTGAAGAGAAAAGATAGTGACACAACAGTAGAGAGACGAGTTTATTGCTCTGCCGCTGCTCAATCACCACCACCAGCATGGCCAGGAACAGCTATTCCCGAGCCTTCTGATTTCAAGACATGGGATGGGCAAAAACCTATTTCTGTCTTAGGATCTACGGGTTCAATTGGAACTCAGACACTGAGTATAGTGGCTGAGTTCCCAGAAAGATTTAAAGTTGTGAGCCTTGCTGCTGGCTCTAATATTACTCTTCTTGCTGACCAGATTAAAACATTTAAGCCTGAAGTTGTTGGTCTTAGAAATGAGTCTTTAATTGATGAACTCAAAGAGGCTTTGGCTGATGTGGATCACAAACCCGAAATCATCCCTGGAGAGCAAGGAGTCATTGAGGCCGCTCGTCACCCTGATGCCACCACTGTAGTTACAGGCATAGTTGGTTGTGCAGGATTAAAGCCAACAGTTGCAGCAATTGAAGCAGGGAAAGACATAGCATTGGCCAACAAAGAGACAATGATTGCGGGAGCCCCTTTTGTTCTTCCTCTTGCTCACAAACATAACATAAAAATTCTTCCCGCTGATTCGGAACATTCTGCAATTTTTCAGTCTATCCAGGGGTTGCCAAAGGGTGCACTTAGGAAAATCCTTTTAACTGGATCAGGAGGTGCTTTCAGAGAATGGCCTGCTGAAAAGATGAAAGATATTAAGCTTGCTGATGCATTAAAGCATCCCATATGGAGTTTGGGGAGAAAAATAACTATTGACTCTGCTACCCTTTTCAATAAGGGTCTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAAGCTATGACGATATTGAGATTGTTATTCATCCTCAATCTATCATACATTCCTTGGTTGAAACGCAGGATTCATCTGTTATTGCACAGTTGGGGATACCTGACATGCGCTTACCGCTCCTTTATACATTATCTTGGCCAGAAAGAATCTATTGCTCTGAAGTAACTTGGCCTCGTCTTGATCTTAGCAAGTATGGTTCTCTAACATTTTATGCACCGGATGACAAGAAGTTTCCATCGGTGAATCTTTGCTATGCTGCGGGACGTGCTGGAGGCACCATGACAGGAGTTCTTAGTGCAGCAAATGAGAAAGCTGTAGAAATGTTTGTTGAAGAAAAGATTAGTTATCTGGATATATTCAAGGTTGTGGAACTAACTTGTCAGGAACATCAAAAGGAATTAGTAGCATCTCCGTCACTCGAAGAAATTATTCACTATGACCAATGGGCTCGACAATATGCTGCTAGTCTGCAAAAAGCTTCAAGTGTTTGA
Predicted protein sequences of Glyma.16g089000
>Glyma.16g089000.1.p sequence-type=predicted peptide transcript=Glyma.16g089000.1 locus=Glyma.16g089000 ID=Glyma.16g089000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALNLPSPAQVKPLFFSSNNSTKLPGSFSLKRKDSDTTVERRVYCSAAAQSPPPAWPGTAIPEPSDFKTWDGQKPISVLGSTGSIGTQTLSIVAEFPERFKVVSLAAGSNITLLADQIKTFKPEVVGLRNESLIDELKEALADVDHKPEIIPGEQGVIEAARHPDATTVVTGIVGCAGLKPTVAAIEAGKDIALANKETMIAGAPFVLPLAHKHNIKILPADSEHSAIFQSIQGLPKGALRKILLTGSGGAFREWPAEKMKDIKLADALKHPIWSLGRKITIDSATLFNKGLEVIEAHYLFGASYDDIEIVIHPQSIIHSLVETQDSSVIAQLGIPDMRLPLLYTLSWPERIYCSEVTWPRLDLSKYGSLTFYAPDDKKFPSVNLCYAAGRAGGTMTGVLSAANEKAVEMFVEEKISYLDIFKVVELTCQEHQKELVASPSLEEIIHYDQWARQYAASLQKASSV*

>Glyma.16g089000.2.p sequence-type=predicted peptide transcript=Glyma.16g089000.2 locus=Glyma.16g089000 ID=Glyma.16g089000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALNLPSPAQVKPLFFSSNNSTKLPGSFSLKRKDSDTTVERRVYCSAAAQSPPPAWPGTAIPEPSDFKTWDGQKPISVLGSTGSIGTQTLSIVAEFPERFKVVSLAAGSNITLLADQIKTFKPEVVGLRNESLIDELKEALADVDHKPEIIPGEQGVIEAARHPDATTVVTGIVGCAGLKPTVAAIEAGKDIALANKETMIAGAPFVLPLAHKHNIKILPADSEHSAIFQSIQGLPKGALRKILLTGSGGAFREWPAEKMKDIKLADALKHPIWSLGRKITIDSATLFNKGLEVIEAHYLFGASYDDIEIVIHPQSIIHSLVETQDSSVIAQLGIPDMRLPLLYTLSWPERIYCSEVTWPRLDLSKYGSLTFYAPDDKKFPSVNLCYAAGRAGGTMTGVLSAANEKAVEMFVEEK*

>Glyma.16g089000.3.p sequence-type=predicted peptide transcript=Glyma.16g089000.3 locus=Glyma.16g089000 ID=Glyma.16g089000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MERSFNFSQLIVGHLYNVKLVRTGSFSLKRKDSDTTVERRVYCSAAAQSPPPAWPGTAIPEPSDFKTWDGQKPISVLGSTGSIGTQTLSIVAEFPERFKVVSLAAGSNITLLADQIKTFKPEVVGLRNESLIDELKEALADVDHKPEIIPGEQGVIEAARHPDATTVVTGIVGCAGLKPTVAAIEAGKDIALANKETMIAGAPFVLPLAHKHNIKILPADSEHSAIFQSIQGLPKGALRKILLTGSGGAFREWPAEKMKDIKLADALKHPIWSLGRKITIDSATLFNKGLEVIEAHYLFGASYDDIEIVIHPQSIIHSLVETQDSSVIAQLGIPDMRLPLLYTLSWPERIYCSEVTWPRLDLSKYGSLTFYAPDDKKFPSVNLCYAAGRAGGTMTGVLSAANEKAVEMFVEEKISYLDIFKVVELTCQEHQKELVASPSLEEIIHYDQWARQYAASLQKASSV*






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