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Report for Sequence Feature Glyma.16g082400

Feature Type:gene_model
Chromosome:Gm16
Start:9198804
stop:9223828
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.16g082400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G21630.1AT Sec23/Sec24 protein transport family protein JGI N/AIEA
GO:0006886GO-bp intracellular protein transport EnsemblGenomesN/AIEA
GO:0006886GO-bp intracellular protein transport JGI N/AIEA
GO:0006888GO-bp ER to Golgi vesicle-mediated transport EnsemblGenomesN/AIEA
GO:0006888GO-bp ER to Golgi vesicle-mediated transport JGI N/AIEA
GO:0015031GO-bp protein transport EnsemblGenomesN/AIEA
GO:0090114GO-bp COPII-coated vesicle budding EnsemblGenomesN/AIEA
GO:0000139GO-cc Golgi membrane EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0030127GO-cc COPII vesicle coat EnsemblGenomesN/AIEA
GO:0030127GO-cc COPII vesicle coat JGI N/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
KOG1986 KOG Vesicle coat complex COPII, subunit SEC23 JGI N/AIEA
PTHR11141Panther PROTEIN TRANSPORT PROTEIN SEC23 JGI N/AIEA
PF00626PFAM Gelsolin repeat JGI N/AIEA
PF04810PFAM Sec23/Sec24 zinc finger JGI N/AIEA
PF04811PFAM Sec23/Sec24 trunk domain JGI N/AIEA
PF04815PFAM Sec23/Sec24 helical domain JGI N/AIEA
PF08033PFAM Sec23/Sec24 beta-sandwich domain JGI N/AIEA

Expression Patterns of Glyma.16g082400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.16g082400 not represented in the dataset
Glyma.16g082400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.16g082400
ParalogEvidenceComments
Glyma.03g091800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.16g082400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma16g09225 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.16g082400
>Glyma.16g082400.2 sequence-type=transcript locus=Glyma.16g082400 ID=Glyma.16g082400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATAATAAAGTGAATCTTTCATCCTCTTCGAAAATCACTTGTTAGTTAAGCTATGCATTAACCAACCAATCAAAATCACCCTTAGGATACACTATTGTTCAGTCGACACTGATTCGCTaagaagaagcagaagcagaagaaCTGCACATTCCAGTGCAGCAGATCGAAACTTTTCTTCCCTTCCCTTTCACCATGGCCGAATTTCTGGATCTCGAATCCCAAGACGGCGTGCGAATGCCGTGGAACGTGATCCCTGGCACGAAGCAGGACGCCCAAAACGCCGTCGTCCCCGTCTCCGCCGTCTACACTCCCATAAAGCACTTCACCTCGATGCCGCTCCTCAACTACTCCCCTCTCCGGTGCCGCACTTGCCGCTCCGTCCTCAACCCCTTCTGCATCGTCGACTTCGCCGCCAAGATCTGGATCTGCCCCTTCTGCTTCCAGCGCAACCACTTCCCCCCTCACTACGCATCCATCTCCGACGACTCCCTCCCCGCCGAGCTCTTCCCTCAGTACACCACCGTCGAATACAACTCCGACGCCGTGGGCCCCACCAATACCCCCTCCGTGCCCCCAGTCTTCCTCTTCGTCGTCGACACGTGCGTCATCGAAGAGGAGATCGGGTTCCTGCGCTCGGCGTTAGCCCAGGCCGTGGAGCTTTTGCCTGAGAACTCGCTCGTTGGACTCATTACCTTCGGGATGTTTGCTCATGTTCACGAATTAGGGTTCGGTGCGGTGCCGAAGACTTACGTTTTCAAGGGATCTAAGGATGTTACCAAGGACCAGTTGCTCGAGCAGATGAGTTTTTTTGCGAAGAAGCCGCGCCCGGCGGTCGGCGTGGTCGCTGGCGCGAGGGACGGGCTCTCTACGGAGAGTATTTCGCGGTTCCTCGTGCCGGCGTCGGAGTGCGAGTTCACTCTCAATTCGGTATTGGAGGAGCTGCAGAAGGATCCTTGGGCGGTGCCGGCGGATCAGCGGGCTGCTCGGTGCACCAGCACGGCACTGAGTATTGCGGCGAGTTTGTTGGGGGCATGTGTCCCTGGCTCTGCTGCAAGAATAATGGCATTTATTGGAGGACCAGCTACTGAAGGACCTGCTCCTATTGTATCCAAACAACTTTCTGAACCAATTCGCTCTCACAAGGATCTGGATAAAGATTCTGTGCCACATTACCATAACTGTGTGAAATTCTATGATGGACTTTCGAAGCAGCTTGTTCATCAAGGCCATGTACTAGATCTTTTTGCTTGTGCTCTTGATCAGGTTGGAATTGCTGAACTTAAAACAGCTGTTGAAAGAACCGGAGGTCTTGTTGTACTTGCTGAAAGTTTTGGCCATTCAGTGTTCAAGGATTCACTAAAGCGTGTTTTCCAATCGGGTGATTATGATTTGGGTCTATCTTCAAATGGAATATTTGAGATAAACTGCTCTAAGGACTTGAAAGTCCAAGGTATTATTGGCCCTTGTGCATCTCTTGAAAAGAAAGGCCCATTATGCTCAGATGTTGTTATTGGTCAAGGGGGTACAAGTGCATGGAAGATGTGTGGCCTTGACAAATCCACATCATTGTGTCTATTTTTCGACGTTGTGAGGAAGGAAACTCCTGATGCAACAATGCAGTCCACAAGCAATCAATTTTACTTCCAATTTTTGACGTATTATCAGAATAACAGTGGGCAAATGAGATTACGGGTTACGACCCTTTCACGTAGATGGGTTGCTGGACCAGAAAGTATACAGGACTTGATTGCTGGATTTGACCAAGAAGCAGCTGCTATAGTCATGGCACGCCAAGTCTCTTTTAAAATGGAAACAGAGGCTGAATTCGATCCTATCAGATGGTTGGACAAGGCATTGATAAATTTGTGTTCTCGGTTTGGGGAATTTCAAAAAGACACTCCATCTTCTTTCAGTTTGTCTCCCAGGTTGTCAATATTCCCTCAATTTATGTTTCATTTACGACGCTCTCAATTTGTTCAGGTCTTTAACAACAGCCCAGATGAGACTGCTTACTTTAGAATGATACTGAACCGTGAAAATGTTACAAATTCTGTTGTCATGGTTCAGCCTTCGTTGATTTGTTATTCATTCCATGCTGGTCCTGAACCAGCTCTTCTTGATGTTGCGGCCATTGCGGCAGATAAGATCCTGCTTTTGGATTCATTTTTCACTGTTGTCATTTTTCATGGTTCAACCATTGCTCAGTGGCGTAAGGCTGGATATCATAATGAACCGGAACATCAGGCATTTGCTCAATTGCTACTAGCTCCTCATGATGATTCAGATTTAATAATAAAGGAGAGATTTCCTGTGCCTCGCCTGGTTGTTTGTGATCAGCATGGCTCTCAGCTTTGTTCATTTGCTTTAAGTAACTGATGTATAAACCCTTCCTAGCCACTCAGAGGTCCAATGATTGACTAGCTTGCATTAAAATTTATGGGCTCGATTTCTACTAGCAAAGTTAAACCCTTCTGCTACTTATAACACTGAATCTTATAATCCTGGAGGGGATATTATCTTTACCGATGATGTTAGCTTTGAGGTCTTCCTGGATCACTTACAGAGATTAGTAGTTCAATAAAATTACAGTTTTACCTTGGACTTTTTATGTAAAATTTTCCTTCGATTGCTGCTTGTACATTACCTTCATTTTAGTATGCTGTTATAATTTCCAATTTTGTGCAAAATGTTGTAATTATTTGGAATCATGCATTCTCAAATCGATGACATGAGTATTAAATCTATTGTCTAGTTTTGTGACAGGTGGAATATTGTTTGGTGGTTGCACAGTTTTATAAATACTATTGATTATAAAATCACGAGTCATTAAGTAAGAC
Coding sequences of Glyma.16g082400
>Glyma.16g082400.1 sequence-type=CDS polypeptide=Glyma.16g082400.1.p locus=Glyma.16g082400 ID=Glyma.16g082400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGAATTTCTGGATCTCGAATCCCAAGACGGCGTGCGAATGCCGTGGAACGTGATCCCTGGCACGAAGCAGGACGCCCAAAACGCCGTCGTCCCCGTCTCCGCCGTCTACACTCCCATAAAGCACTTCACCTCGATGCCGCTCCTCAACTACTCCCCTCTCCGGTGCCGCACTTGCCGCTCCGTCCTCAACCCCTTCTGCATCGTCGACTTCGCCGCCAAGATCTGGATCTGCCCCTTCTGCTTCCAGCGCAACCACTTCCCCCCTCACTACGCATCCATCTCCGACGACTCCCTCCCCGCCGAGCTCTTCCCTCAGTACACCACCGTCGAATACAACTCCGACGCCGTGGGCCCCACCAATACCCCCTCCGTGCCCCCAGTCTTCCTCTTCGTCGTCGACACGTGCGTCATCGAAGAGGAGATCGGGTTCCTGCGCTCGGCGTTAGCCCAGGCCGTGGAGCTTTTGCCTGAGAACTCGCTCGTTGGACTCATTACCTTCGGGATGTTTGCTCATGTTCACGAATTAGGGTTCGGTGCGGTGCCGAAGACTTACGTTTTCAAGGGATCTAAGGATGTTACCAAGGACCAGTTGCTCGAGCAGATGAGTTTTTTTGCGAAGAAGCCGCGCCCGGCGGTCGGCGTGGTCGCTGGCGCGAGGGACGGGCTCTCTACGGAGAGTATTTCGCGGTTCCTCGTGCCGGCGTCGGAGTGCGAGTTCACTCTCAATTCGGTATTGGAGGAGCTGCAGAAGGATCCTTGGGCGGTGCCGGCGGATCAGCGGGCTGCTCGGTGCACCAGCACGGCACTGAGTATTGCGGCGAGTTTGTTGGGGGCATGTGTCCCTGGCTCTGCTGCAAGAATAATGGCATTTATTGGAGGACCAGCTACTGAAGGACCTGCTCCTATTGTATCCAAACAACTTTCTGAACCAATTCGCTCTCACAAGGATCTGGATAAAGATTCTGTGCCACATTACCATAACTGTGTGAAATTCTATGATGGACTTTCGAAGCAGCTTGTTCATCAAGGCCATGTACTAGATCTTTTTGCTTGTGCTCTTGATCAGGTTGGAATTGCTGAACTTAAAACAGCTGTTGAAAGAACCGGAGGTCTTGTTGTACTTGCTGAAAGTTTTGGCCATTCAGTGTTCAAGGATTCACTAAAGCGTGTTTTCCAATCGGGTGATTATGATTTGGGTCTATCTTCAAATGGAATATTTGAGATAAACTGCTCTAAGGACTTGAAAGTCCAAGGTATTATTGGCCCTTGTGCATCTCTTGAAAAGAAAGGCCCATTATGCTCAGATGTTGTTATTGGTCAAGGGGGTACAAGTGCATGGAAGATGTGTGGCCTTGACAAATCCACATCATTGTGTCTATTTTTCGACGTTGTGAGGAAGGAAACTCCTGATGCAACAATGCAGTCCACAAGCAATCAATTTTACTTCCAATTTTTGACGTATTATCAGAATAACAGTGGGCAAATGAGATTACGGGTTACGACCCTTTCACGTAGATGGGTTGCTGGACCAGAAAGTATACAGGACTTGATTGCTGGATTTGACCAAGAAGCAGCTGCTATAGTCATGGCACGCCAAGTCTCTTTTAAAATGGAAACAGAGGCTGAATTCGATCCTATCAGATGGTTGGACAAGGCATTGATAAATTTGTGTTCTCGGTTTGGGGAATTTCAAAAAGACACTCCATCTTCTTTCAGTTTGTCTCCCAGGTTGTCAATATTCCCTCAATTTATGTTTCATTTACGACGCTCTCAATTTGTTCAGGTCTTTAACAACAGCCCAGATGAGACTGCTTACTTTAGAATGATACTGAACCGTGAAAATGTTACAAATTCTGTTGTCATGGTTCAGCCTTCGTTGATTTGTTATTCATTCCATGCTGGTCCTGAACCAGCTCTTCTTGATGTTGCGGCCATTGCGGCAGATAAGATCCTGCTTTTGGATTCATTTTTCACTGTTGTCATTTTTCATGGTTCAACCATTGCTCAGTGGCGTAAGGCTGGATATCATAATGAACCGGAACATCAGGCATTTGCTCAATTGCTACTAGCTCCTCATGATGATTCAGATTTAATAATAAAGGAGAGATTTCCTGTGCCTCGCCTGGTTGTTTGTGATCAGCATGGCTCTCAGGCTCGATTTCTACTAGCAAAGTTAAACCCTTCTGCTACTTATAACACTGAATCTTATAATCCTGGAGGGGATATTATCTTTACCGATGATGTTAGCTTTGAGGTCTTCCTGGATCACTTACAGAGATTAGTAGTTCAATAA

>Glyma.16g082400.2 sequence-type=CDS polypeptide=Glyma.16g082400.2.p locus=Glyma.16g082400 ID=Glyma.16g082400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGAATTTCTGGATCTCGAATCCCAAGACGGCGTGCGAATGCCGTGGAACGTGATCCCTGGCACGAAGCAGGACGCCCAAAACGCCGTCGTCCCCGTCTCCGCCGTCTACACTCCCATAAAGCACTTCACCTCGATGCCGCTCCTCAACTACTCCCCTCTCCGGTGCCGCACTTGCCGCTCCGTCCTCAACCCCTTCTGCATCGTCGACTTCGCCGCCAAGATCTGGATCTGCCCCTTCTGCTTCCAGCGCAACCACTTCCCCCCTCACTACGCATCCATCTCCGACGACTCCCTCCCCGCCGAGCTCTTCCCTCAGTACACCACCGTCGAATACAACTCCGACGCCGTGGGCCCCACCAATACCCCCTCCGTGCCCCCAGTCTTCCTCTTCGTCGTCGACACGTGCGTCATCGAAGAGGAGATCGGGTTCCTGCGCTCGGCGTTAGCCCAGGCCGTGGAGCTTTTGCCTGAGAACTCGCTCGTTGGACTCATTACCTTCGGGATGTTTGCTCATGTTCACGAATTAGGGTTCGGTGCGGTGCCGAAGACTTACGTTTTCAAGGGATCTAAGGATGTTACCAAGGACCAGTTGCTCGAGCAGATGAGTTTTTTTGCGAAGAAGCCGCGCCCGGCGGTCGGCGTGGTCGCTGGCGCGAGGGACGGGCTCTCTACGGAGAGTATTTCGCGGTTCCTCGTGCCGGCGTCGGAGTGCGAGTTCACTCTCAATTCGGTATTGGAGGAGCTGCAGAAGGATCCTTGGGCGGTGCCGGCGGATCAGCGGGCTGCTCGGTGCACCAGCACGGCACTGAGTATTGCGGCGAGTTTGTTGGGGGCATGTGTCCCTGGCTCTGCTGCAAGAATAATGGCATTTATTGGAGGACCAGCTACTGAAGGACCTGCTCCTATTGTATCCAAACAACTTTCTGAACCAATTCGCTCTCACAAGGATCTGGATAAAGATTCTGTGCCACATTACCATAACTGTGTGAAATTCTATGATGGACTTTCGAAGCAGCTTGTTCATCAAGGCCATGTACTAGATCTTTTTGCTTGTGCTCTTGATCAGGTTGGAATTGCTGAACTTAAAACAGCTGTTGAAAGAACCGGAGGTCTTGTTGTACTTGCTGAAAGTTTTGGCCATTCAGTGTTCAAGGATTCACTAAAGCGTGTTTTCCAATCGGGTGATTATGATTTGGGTCTATCTTCAAATGGAATATTTGAGATAAACTGCTCTAAGGACTTGAAAGTCCAAGGTATTATTGGCCCTTGTGCATCTCTTGAAAAGAAAGGCCCATTATGCTCAGATGTTGTTATTGGTCAAGGGGGTACAAGTGCATGGAAGATGTGTGGCCTTGACAAATCCACATCATTGTGTCTATTTTTCGACGTTGTGAGGAAGGAAACTCCTGATGCAACAATGCAGTCCACAAGCAATCAATTTTACTTCCAATTTTTGACGTATTATCAGAATAACAGTGGGCAAATGAGATTACGGGTTACGACCCTTTCACGTAGATGGGTTGCTGGACCAGAAAGTATACAGGACTTGATTGCTGGATTTGACCAAGAAGCAGCTGCTATAGTCATGGCACGCCAAGTCTCTTTTAAAATGGAAACAGAGGCTGAATTCGATCCTATCAGATGGTTGGACAAGGCATTGATAAATTTGTGTTCTCGGTTTGGGGAATTTCAAAAAGACACTCCATCTTCTTTCAGTTTGTCTCCCAGGTTGTCAATATTCCCTCAATTTATGTTTCATTTACGACGCTCTCAATTTGTTCAGGTCTTTAACAACAGCCCAGATGAGACTGCTTACTTTAGAATGATACTGAACCGTGAAAATGTTACAAATTCTGTTGTCATGGTTCAGCCTTCGTTGATTTGTTATTCATTCCATGCTGGTCCTGAACCAGCTCTTCTTGATGTTGCGGCCATTGCGGCAGATAAGATCCTGCTTTTGGATTCATTTTTCACTGTTGTCATTTTTCATGGTTCAACCATTGCTCAGTGGCGTAAGGCTGGATATCATAATGAACCGGAACATCAGGCATTTGCTCAATTGCTACTAGCTCCTCATGATGATTCAGATTTAATAATAAAGGAGAGATTTCCTGTGCCTCGCCTGGTTGTTTGTGATCAGCATGGCTCTCAGCTTTGTTCATTTGCTTTAAGTAACTGA
Predicted protein sequences of Glyma.16g082400
>Glyma.16g082400.1.p sequence-type=predicted peptide transcript=Glyma.16g082400.1 locus=Glyma.16g082400 ID=Glyma.16g082400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAEFLDLESQDGVRMPWNVIPGTKQDAQNAVVPVSAVYTPIKHFTSMPLLNYSPLRCRTCRSVLNPFCIVDFAAKIWICPFCFQRNHFPPHYASISDDSLPAELFPQYTTVEYNSDAVGPTNTPSVPPVFLFVVDTCVIEEEIGFLRSALAQAVELLPENSLVGLITFGMFAHVHELGFGAVPKTYVFKGSKDVTKDQLLEQMSFFAKKPRPAVGVVAGARDGLSTESISRFLVPASECEFTLNSVLEELQKDPWAVPADQRAARCTSTALSIAASLLGACVPGSAARIMAFIGGPATEGPAPIVSKQLSEPIRSHKDLDKDSVPHYHNCVKFYDGLSKQLVHQGHVLDLFACALDQVGIAELKTAVERTGGLVVLAESFGHSVFKDSLKRVFQSGDYDLGLSSNGIFEINCSKDLKVQGIIGPCASLEKKGPLCSDVVIGQGGTSAWKMCGLDKSTSLCLFFDVVRKETPDATMQSTSNQFYFQFLTYYQNNSGQMRLRVTTLSRRWVAGPESIQDLIAGFDQEAAAIVMARQVSFKMETEAEFDPIRWLDKALINLCSRFGEFQKDTPSSFSLSPRLSIFPQFMFHLRRSQFVQVFNNSPDETAYFRMILNRENVTNSVVMVQPSLICYSFHAGPEPALLDVAAIAADKILLLDSFFTVVIFHGSTIAQWRKAGYHNEPEHQAFAQLLLAPHDDSDLIIKERFPVPRLVVCDQHGSQARFLLAKLNPSATYNTESYNPGGDIIFTDDVSFEVFLDHLQRLVVQ*

>Glyma.16g082400.2.p sequence-type=predicted peptide transcript=Glyma.16g082400.2 locus=Glyma.16g082400 ID=Glyma.16g082400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAEFLDLESQDGVRMPWNVIPGTKQDAQNAVVPVSAVYTPIKHFTSMPLLNYSPLRCRTCRSVLNPFCIVDFAAKIWICPFCFQRNHFPPHYASISDDSLPAELFPQYTTVEYNSDAVGPTNTPSVPPVFLFVVDTCVIEEEIGFLRSALAQAVELLPENSLVGLITFGMFAHVHELGFGAVPKTYVFKGSKDVTKDQLLEQMSFFAKKPRPAVGVVAGARDGLSTESISRFLVPASECEFTLNSVLEELQKDPWAVPADQRAARCTSTALSIAASLLGACVPGSAARIMAFIGGPATEGPAPIVSKQLSEPIRSHKDLDKDSVPHYHNCVKFYDGLSKQLVHQGHVLDLFACALDQVGIAELKTAVERTGGLVVLAESFGHSVFKDSLKRVFQSGDYDLGLSSNGIFEINCSKDLKVQGIIGPCASLEKKGPLCSDVVIGQGGTSAWKMCGLDKSTSLCLFFDVVRKETPDATMQSTSNQFYFQFLTYYQNNSGQMRLRVTTLSRRWVAGPESIQDLIAGFDQEAAAIVMARQVSFKMETEAEFDPIRWLDKALINLCSRFGEFQKDTPSSFSLSPRLSIFPQFMFHLRRSQFVQVFNNSPDETAYFRMILNRENVTNSVVMVQPSLICYSFHAGPEPALLDVAAIAADKILLLDSFFTVVIFHGSTIAQWRKAGYHNEPEHQAFAQLLLAPHDDSDLIIKERFPVPRLVVCDQHGSQLCSFALSN*






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