SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G77180.1 | AT | chromatin protein family | JGI | N/A | IEA |
| GO:0000350 | GO-bp | generation of catalytic spliceosome for second transesterification step | EnsemblGenomes | N/A | IEA |
| GO:0000398 | GO-bp | mRNA splicing, via spliceosome | EnsemblGenomes | N/A | IEA |
| GO:0000398 | GO-bp | mRNA splicing, via spliceosome | JGI | N/A | IEA |
| GO:0006357 | GO-bp | regulation of transcription by RNA polymerase II | EnsemblGenomes | N/A | IEA |
| GO:0005681 | GO-cc | spliceosomal complex | EnsemblGenomes | N/A | IEA |
| GO:0005681 | GO-cc | spliceosomal complex | JGI | N/A | IEA |
| GO:0071013 | GO-cc | catalytic step 2 spliceosome | EnsemblGenomes | N/A | IEA |
| GO:0071014 | GO-cc | post-mRNA release spliceosomal complex | EnsemblGenomes | N/A | IEA |
| GO:0071141 | GO-cc | SMAD protein complex | EnsemblGenomes | N/A | IEA |
| GO:0003712 | GO-mf | transcription cofactor activity | EnsemblGenomes | N/A | IEA |
| KOG2441 | KOG | mRNA splicing factor/probable chromatin binding snw family nuclear protein | JGI | N/A | IEA |
| PTHR12096 | Panther | NUCLEAR PROTEIN SKIP-RELATED | JGI | N/A | IEA |
| PF02731 | PFAM | SKIP/SNW domain | JGI | N/A | IEA |
|
Glyma.16g077700 not represented in the dataset |
Glyma.16g077700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.01g008600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma16g08450 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.16g077700.1 sequence-type=CDS polypeptide=Glyma.16g077700.1.p locus=Glyma.16g077700 ID=Glyma.16g077700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCCACTCTCAAAGAGCTTCTTCCTCCTGCGAAATCCTCCTCCACTGCCTACTACGACCACACCAACGATCCATGGTTCAAGCAGCGTTTCTCCTCGGAGGAGGAGGAGAAATGCGCCGCTGCGCAAAACGAGAACGCGCGAAAAATTGTCTACACGCAGCAGAAGGATCTCATTCCTAAGTGTCTTAAGAACGACGAAGAAGACGACGACGTTTCCGACGACGAAACGCAGAAACAGATCGAGGAAACGATGCAGGAGACCAAGGCCGCTTTGGAGAAAATTGTGAACGTTAGGTTAAGCGCTGCGCAACCGAAGAACGTTCCGAAGCAGAACACCGATGCGAAGTATATAAAATACAAACCCTCACAGCAATCCGCGGCGTTCAATTCGGGTGCTAAGGAGAGGGTTATTAGGATGGTTGAGATGGCGGTGGATCCTCTTGAGCCTCCGAAGTTCAAGCACAAGCGTGTTCCCAAGGCGTCGGGGTCTCCGCCGGTGCCGGTGATGCACTCGCCGCCGCGGCCTGTGACGGTGAAGGATCAGCAGGATTGGAAGATTCCTCCCTGTATTTCGAATTGGAAGAATCCGAAGGGTTATACTATTCCTCTTGATAAGAGGCTTGCTGCTGATGGGAGAGGCCTTCAAGAGGTTCAGATTAATGACAATTTTGCGAAATTATCGGAGGCGCTGTATGTGGCGGAGCAGAAGGCGAGAGAGGCGGTTGCAATGAGGTCTAAGGTGCAGAAGGAGATGATGTTGAAGGAGAAGGAGAGGAAGGAGCAGGAGTTGAGGGCATTGGCACAGAAGGCGCGGTCGGAGAGAATTGGAGGGGAGAGAATTGGGGTTGTACCAGCGGCACCACCAATTGATTATGATCATGAGAAGGAGAATCCGAGGGAGAGGGAGAGGGAGAGGAGTTTTGTGAAGGAGAGTAGAGATGAGAGGGAGGAGAGGATGCAGCGTGAGAAAATTCGCGAGGAGAGGAGGAAGGAGAGGGAGAGGGAGAGAAGATTGGAGGCTAAGGATGCTGCTATGGGGAAGAGGAGCAAGATTACGCGCGATAGGGATCGTGATATCAGTGAAAAAGTTGCTCTTGGTATGGCTTCTACCAAGCCGGGTACTGAGGTTATGTATGATGAGAGGCTGTTTAACCAGGATAAGGGAATTGCGTCTGGGTTTGCCACTGATGATCAGTACAATGTGTATGAGCATGGGTTGTTTACTGCGCAGCCCACACTTTCCACATTGTATAGGCCGAAGAAGAATATTGATGATGAGACTTATGGAGGTGCGGATGAGCAGTTGGAGAAGATTATGAAGACTGATAGGTTTAAGCCCGATAAAGGGTTTTCTGGGGCTTCTGAGAGGGCTGGTCCAAGGGATCGGCCGGTTGAGTTTGAGAATGAGGAGGCTGATCCATTTGGTTTGGATCAGTTCTTGACTGAGGTGAAGAAGGGTAAGAAGGCCATGGAGAAAGTGGGTGGTGGAGGGACTATGAGGGCAAGTGCTGGATCATCGATGCGGGATGGTAATGAGGGAGGTTCAGGTAGGACTCGCATTGGATTTGAAAGAGGGCATTAG
>Glyma.16g077700.1.p sequence-type=predicted peptide transcript=Glyma.16g077700.1 locus=Glyma.16g077700 ID=Glyma.16g077700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MATLKELLPPAKSSSTAYYDHTNDPWFKQRFSSEEEEKCAAAQNENARKIVYTQQKDLIPKCLKNDEEDDDVSDDETQKQIEETMQETKAALEKIVNVRLSAAQPKNVPKQNTDAKYIKYKPSQQSAAFNSGAKERVIRMVEMAVDPLEPPKFKHKRVPKASGSPPVPVMHSPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQEVQINDNFAKLSEALYVAEQKAREAVAMRSKVQKEMMLKEKERKEQELRALAQKARSERIGGERIGVVPAAPPIDYDHEKENPRERERERSFVKESRDEREERMQREKIREERRKERERERRLEAKDAAMGKRSKITRDRDRDISEKVALGMASTKPGTEVMYDERLFNQDKGIASGFATDDQYNVYEHGLFTAQPTLSTLYRPKKNIDDETYGGADEQLEKIMKTDRFKPDKGFSGASERAGPRDRPVEFENEEADPFGLDQFLTEVKKGKKAMEKVGGGGTMRASAGSSMRDGNEGGSGRTRIGFERGH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
