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Report for Sequence Feature Glyma.16g077700

Feature Type:gene_model
Chromosome:Gm16
Start:8001027
stop:8003203
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.16g077700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G77180.1AT chromatin protein family JGI N/AIEA
GO:0000350GO-bp generation of catalytic spliceosome for second transesterification step EnsemblGenomesN/AIEA
GO:0000398GO-bp mRNA splicing, via spliceosome EnsemblGenomesN/AIEA
GO:0000398GO-bp mRNA splicing, via spliceosome JGI N/AIEA
GO:0006357GO-bp regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0005681GO-cc spliceosomal complex EnsemblGenomesN/AIEA
GO:0005681GO-cc spliceosomal complex JGI N/AIEA
GO:0071013GO-cc catalytic step 2 spliceosome EnsemblGenomesN/AIEA
GO:0071014GO-cc post-mRNA release spliceosomal complex EnsemblGenomesN/AIEA
GO:0071141GO-cc SMAD protein complex EnsemblGenomesN/AIEA
GO:0003712GO-mf transcription cofactor activity EnsemblGenomesN/AIEA
KOG2441 KOG mRNA splicing factor/probable chromatin binding snw family nuclear protein JGI N/AIEA
PTHR12096Panther NUCLEAR PROTEIN SKIP-RELATED JGI N/AIEA
PF02731PFAM SKIP/SNW domain JGI N/AIEA

Expression Patterns of Glyma.16g077700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.16g077700
ParalogEvidenceComments
Glyma.01g008600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.16g077700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma16g08450 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.16g077700
>Glyma.16g077700.1 sequence-type=CDS polypeptide=Glyma.16g077700.1.p locus=Glyma.16g077700 ID=Glyma.16g077700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCACTCTCAAAGAGCTTCTTCCTCCTGCGAAATCCTCCTCCACTGCCTACTACGACCACACCAACGATCCATGGTTCAAGCAGCGTTTCTCCTCGGAGGAGGAGGAGAAATGCGCCGCTGCGCAAAACGAGAACGCGCGAAAAATTGTCTACACGCAGCAGAAGGATCTCATTCCTAAGTGTCTTAAGAACGACGAAGAAGACGACGACGTTTCCGACGACGAAACGCAGAAACAGATCGAGGAAACGATGCAGGAGACCAAGGCCGCTTTGGAGAAAATTGTGAACGTTAGGTTAAGCGCTGCGCAACCGAAGAACGTTCCGAAGCAGAACACCGATGCGAAGTATATAAAATACAAACCCTCACAGCAATCCGCGGCGTTCAATTCGGGTGCTAAGGAGAGGGTTATTAGGATGGTTGAGATGGCGGTGGATCCTCTTGAGCCTCCGAAGTTCAAGCACAAGCGTGTTCCCAAGGCGTCGGGGTCTCCGCCGGTGCCGGTGATGCACTCGCCGCCGCGGCCTGTGACGGTGAAGGATCAGCAGGATTGGAAGATTCCTCCCTGTATTTCGAATTGGAAGAATCCGAAGGGTTATACTATTCCTCTTGATAAGAGGCTTGCTGCTGATGGGAGAGGCCTTCAAGAGGTTCAGATTAATGACAATTTTGCGAAATTATCGGAGGCGCTGTATGTGGCGGAGCAGAAGGCGAGAGAGGCGGTTGCAATGAGGTCTAAGGTGCAGAAGGAGATGATGTTGAAGGAGAAGGAGAGGAAGGAGCAGGAGTTGAGGGCATTGGCACAGAAGGCGCGGTCGGAGAGAATTGGAGGGGAGAGAATTGGGGTTGTACCAGCGGCACCACCAATTGATTATGATCATGAGAAGGAGAATCCGAGGGAGAGGGAGAGGGAGAGGAGTTTTGTGAAGGAGAGTAGAGATGAGAGGGAGGAGAGGATGCAGCGTGAGAAAATTCGCGAGGAGAGGAGGAAGGAGAGGGAGAGGGAGAGAAGATTGGAGGCTAAGGATGCTGCTATGGGGAAGAGGAGCAAGATTACGCGCGATAGGGATCGTGATATCAGTGAAAAAGTTGCTCTTGGTATGGCTTCTACCAAGCCGGGTACTGAGGTTATGTATGATGAGAGGCTGTTTAACCAGGATAAGGGAATTGCGTCTGGGTTTGCCACTGATGATCAGTACAATGTGTATGAGCATGGGTTGTTTACTGCGCAGCCCACACTTTCCACATTGTATAGGCCGAAGAAGAATATTGATGATGAGACTTATGGAGGTGCGGATGAGCAGTTGGAGAAGATTATGAAGACTGATAGGTTTAAGCCCGATAAAGGGTTTTCTGGGGCTTCTGAGAGGGCTGGTCCAAGGGATCGGCCGGTTGAGTTTGAGAATGAGGAGGCTGATCCATTTGGTTTGGATCAGTTCTTGACTGAGGTGAAGAAGGGTAAGAAGGCCATGGAGAAAGTGGGTGGTGGAGGGACTATGAGGGCAAGTGCTGGATCATCGATGCGGGATGGTAATGAGGGAGGTTCAGGTAGGACTCGCATTGGATTTGAAAGAGGGCATTAG
Predicted protein sequences of Glyma.16g077700
>Glyma.16g077700.1.p sequence-type=predicted peptide transcript=Glyma.16g077700.1 locus=Glyma.16g077700 ID=Glyma.16g077700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATLKELLPPAKSSSTAYYDHTNDPWFKQRFSSEEEEKCAAAQNENARKIVYTQQKDLIPKCLKNDEEDDDVSDDETQKQIEETMQETKAALEKIVNVRLSAAQPKNVPKQNTDAKYIKYKPSQQSAAFNSGAKERVIRMVEMAVDPLEPPKFKHKRVPKASGSPPVPVMHSPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQEVQINDNFAKLSEALYVAEQKAREAVAMRSKVQKEMMLKEKERKEQELRALAQKARSERIGGERIGVVPAAPPIDYDHEKENPRERERERSFVKESRDEREERMQREKIREERRKERERERRLEAKDAAMGKRSKITRDRDRDISEKVALGMASTKPGTEVMYDERLFNQDKGIASGFATDDQYNVYEHGLFTAQPTLSTLYRPKKNIDDETYGGADEQLEKIMKTDRFKPDKGFSGASERAGPRDRPVEFENEEADPFGLDQFLTEVKKGKKAMEKVGGGGTMRASAGSSMRDGNEGGSGRTRIGFERGH*






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