SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.16g072300

Feature Type:gene_model
Chromosome:Gm16
Start:7277776
stop:7285867
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.16g072300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G27730.1AT ATP binding;ATP-dependent helicases;DNA helicases JGI N/AIEA
GO:0010501GO-bp RNA secondary structure unwinding EnsemblGenomesN/AIEA
GO:0005730GO-cc nucleolus EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0004004GO-mf ATP-dependent RNA helicase activity EnsemblGenomesN/AIEA
GO:0004386GO-mf helicase activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0008026GO-mf ATP-dependent helicase activity JGI N/AIEA
GO:0016787GO-mf hydrolase activity JGI N/AIEA
KOG0952 KOG DNA/RNA helicase MER3/SLH1, DEAD-box superfamily JGI N/AIEA
PTHR11752Panther HELICASE SKI2W JGI N/AIEA
PTHR11752:SF4Panther JGI N/AIEA
PF00270PFAM DEAD/DEAH box helicase JGI N/AIEA
PF00271PFAM Helicase conserved C-terminal domain JGI N/AIEA
PF02889PFAM Sec63 Brl domain JGI N/AIEA

Proteins Associated with Glyma.16g072300
LocusGene SymbolProtein Name
MER3 ATP-dependent DNA helicase

Expression Patterns of Glyma.16g072300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.16g072300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma16g07850 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.16g072300
>Glyma.16g072300.1 sequence-type=CDS polypeptide=Glyma.16g072300.1.p locus=Glyma.16g072300 ID=Glyma.16g072300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTCGTATTCTTTGAAGTCTGTGTTCGACTTGCCTGCACCATTTCGCTCATGTTTTAGTTTCAGATATTTTAATTCACTTCAGAGTGAATGCTTTCCTATCTGTTTCCACTCTGATGTAAACATGGTCATCTCTGCACCAACTGGGAGTGGTAAAACTGTACTCTTTGAACTTTGCATTTTGAGGCTACTCTCCAGTTTCATCACCGCAGAGGAAAGATTCTTACATTTAAAGGGATCTCTTAAAACAATCTATATAGCCCCATCTAAGGCTTTAGTACAGGAGAAGCTCCGTGATTGGAATAAGAAGTTTGGGCCGTGGGGAATAAATTGCCTGGAGTTAACAGGTGACAATGAATCTTACACTCCAAGGAATATACTAGAAGCTGATATTATTCTCACAACTCCTGAGAAATTTGATGCAGTGTCACGATATGGTATAGAAAGTGGTGGCTTGAGCTTTTTTAGTGACATATCACTTTTACTAATTGATGAAGTTCATCTATTGAATGATCCACGTGGAGCTGCTCTGGAAGCAATTGTTAGTAGAATTAAAATCGTTTCTGGCAATCCGAAAATGAAATCAAATCCTCTGGCTCAGGTCCGCTTCCTTGCTGTGTCTGCTACAATTCCAAATATTGAGGATCTAGCGAAGTGGCTTGAGGTTCCTGATCAAGGGATCAAAAGGTTTGGAGAAGAAATGAGGCCGGTAAAGCTGACAACCAAGGTTTTTGGCTATGCCCCAGCCAAGAATGACTTCCTCTTTGAGAAGCGCCTTCAAAATTATATTTTCGATATTCTCATGCAATACTCAAGAGGGAAATCTGCTCTTGTATTTTGTTCAACAAGAAAGGGAGCACAAGAAGCTGCTCAGCGACTCTCTCAAATAGTAATGACTTTTGGTCAATCAAATCCATTCATTAAGAACAGAGAACAACAAGATCGGCTGAGAGAGGCTTCTTTATCTTGCAGTGACAAGCAAATGCAGTCATATATTCTTTACGGTGTTGGTTATCACAATGGTGGGCTTTGCCTCAAAGATCGAAGTATTGTGGAAGGCCTTTTTCTCAAGGGTGACATTCAAGTACTTTGCACTACAAATACACTAGCCCATGGAATCAATCTCCCAGCACATACAGTGGTTATCAAATCAACACAGCACTTTAACAAGGAAAAAGGTCTCTATATGGAATATGACCGCTCTACTATATTGCAGATGTGTGGAAGGGCAGGCCGACCACCATTTGATGATACAGGCATGGTTATAATCATGACAAGGAGAGAAACGGTTCATTTGTATGAGAATCTCTTAAATGGGTGTGAAGTGGTGGAATCACAATTGCTGTCATGTGTGACGGAGCATTTACTTGCGGAAATAGTTCAACTGACAGTATCTGATATTACAAAAGCAATTGAATGGCTGAAACGCTCCTACTTGTACAACCCTATGAACTATGCAATTAAGAAAGGAATTTCTGGCGATCGTTTAGAGAAGCACGTGCAAGATATTTGTGTGCGTAAAGTTAACGAGTTATCACAGAATGATATGGTCTGGGTTGATGAAGATGGTTTCCTCTTGCGACCATTAGATCCTGGAAGGTTAATGACAAAGTACTATTTGAGATTTGACACAATGAAACAGATAATGCGGACTCCTGAAAATTGCAGTTTGGAAGATGCACTTCATGTTGTGTGTTGTGCAGAAGAAATTGCATGGATACAGCTCAGACGCAATGAGAAGAAACTCTTAAATGAGATCAATGCTGATAAAGATGGTCGGCTTCGCTTTCACATTCTTGGAGATAAAAGGAAAAAGAAGAAGCGCATTCAAACAAGAGAAGAAAAGATATTTATATTAGCAAATGACTGCTTAACCGGTGATCCATCAGTTCATGACCTATCGTTGATTCAGGACATGAATTCTATATGCTCAAATGGATGTAGAATTGCAAAATGCTTGAAAGACTATTTTGTTTATAAAAGGAATTACAAAGGAACTGTGAATTCAGCCCTTCTGGCCAAATCACTAGGCCAGAAGCTTTGGGATGACAGTCCATACCTTCTGAAACAGTTACCTGGAATTGGGATGGTTACAGCAAAGGCACTGCATTCAATGGGAGTTAGATCGTTTGAGGAACTTGCTGATGCTGATCCGAGGAGAATAGAGCTAGTGACTGGTCGAAAATACCCATTTGGTAACCATATTAAAGATTCTCTACTGTCTCTACCTCCAAAAGTTGATGTGACGCTTGCAGAGATTGAAAGCCATATACAAGGAAATTCCAAGCTAGTAGTAACATTGGCTAGGATATCACAGTCAGGCCAGTCAGTTAAACGACATTATGCTGATATGATCGTTGGTTCGGAGGAGGACAACACTATTCTCTTTCATGAAAAAATAAGGGTTGATCAGTTCTCCAGCCCATACAGTGCAACAATTTTTGTGCCCATCGCACAAGGGAAGCAAACCATCAAAGTTGATTTTATATTTGAGGAATACATTGGTATTGATGTCCACCAAAAACTTTCCTTTACGAGAGAGAGCAATTCAATTGTGCTTTTAAAAAGAAACAAGAAGCAGGCTTCTTGTCCTCCACCTGAAGAGATATATGTTATAGAAGATGATAACATAACTGTACCTCGTTTACCAACAAAAGAGCTATGCAAATTGAACGAGGACAGGGATTCCATTCCAAGTTTCGACCTCTTGGATGAAAGTTTTGAGGAAGTGGAAGGTGTGCGTGCTTTTGGGGTTGTAGAGGACGAATGCAAAAGCATCACCGAGAAAACAGTCTTTGACCACATTCGGGAGAAAGCCAAAAACTTTTCTCTCCTGTCTGCATATGATAACATTCACTTTCCATCACTAGAGGTCCTTCTTTCAAGAAATCATGCCCGTGAGAAGAGGCCTGATCATCGTCATGAGGTAGTTGTTCTGGATGATGAAGACAGACCTGAAGTTCCTCAACGAAATGATGTCAATTTGCAAGTTGAGCTGAGGAAGGCAGAACAAGATGATATCAAATTTTATCTGAACGATCATTGTACAACTGGAAGCTCTAATATAGTTGATACAGGTGTTTTCCTTCCTGAACCTGAAGCAATAACTCATGAAAAATCAACTGAAGAAACAGTTTTTGACCATATACGGAGAAAATCTAAGGATTTCCCACCGATTAATAAGCTTAATTGTGCGGAATCAATAATCCATAAAACGGAATTATTCTCAAAGATTAATCCTAGTCCTCCCAGTTCTTTGAGCGATGCTTTTGGTGTGGCAAGAGAGACGAATTCCTTAGAGGTCACCGATAATATGCTTACTTCATACATGAAAACTGCTGCTGAAGTAGAAAAATATACATCCAGTATTCAGGAGGAGAGAAAAAGGTCTTCAGATCCCGGAAGCTTTCCAGAGAGTAGTAAGAAGCAGCGTTGCGCTTCTAGAGACTCTAAAGAAGAGAAGCATAGTTCAAGTGAAATAAGAAGACAGTGCTGTTCTTTGGAAAGCACAAGCCAAATGAAGGAAATAGAGTCATTTCTTGGGTTCAAGAGTGTATTTTCCTTTCTCTAA
Predicted protein sequences of Glyma.16g072300
>Glyma.16g072300.1.p sequence-type=predicted peptide transcript=Glyma.16g072300.1 locus=Glyma.16g072300 ID=Glyma.16g072300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDSYSLKSVFDLPAPFRSCFSFRYFNSLQSECFPICFHSDVNMVISAPTGSGKTVLFELCILRLLSSFITAEERFLHLKGSLKTIYIAPSKALVQEKLRDWNKKFGPWGINCLELTGDNESYTPRNILEADIILTTPEKFDAVSRYGIESGGLSFFSDISLLLIDEVHLLNDPRGAALEAIVSRIKIVSGNPKMKSNPLAQVRFLAVSATIPNIEDLAKWLEVPDQGIKRFGEEMRPVKLTTKVFGYAPAKNDFLFEKRLQNYIFDILMQYSRGKSALVFCSTRKGAQEAAQRLSQIVMTFGQSNPFIKNREQQDRLREASLSCSDKQMQSYILYGVGYHNGGLCLKDRSIVEGLFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEKGLYMEYDRSTILQMCGRAGRPPFDDTGMVIIMTRRETVHLYENLLNGCEVVESQLLSCVTEHLLAEIVQLTVSDITKAIEWLKRSYLYNPMNYAIKKGISGDRLEKHVQDICVRKVNELSQNDMVWVDEDGFLLRPLDPGRLMTKYYLRFDTMKQIMRTPENCSLEDALHVVCCAEEIAWIQLRRNEKKLLNEINADKDGRLRFHILGDKRKKKKRIQTREEKIFILANDCLTGDPSVHDLSLIQDMNSICSNGCRIAKCLKDYFVYKRNYKGTVNSALLAKSLGQKLWDDSPYLLKQLPGIGMVTAKALHSMGVRSFEELADADPRRIELVTGRKYPFGNHIKDSLLSLPPKVDVTLAEIESHIQGNSKLVVTLARISQSGQSVKRHYADMIVGSEEDNTILFHEKIRVDQFSSPYSATIFVPIAQGKQTIKVDFIFEEYIGIDVHQKLSFTRESNSIVLLKRNKKQASCPPPEEIYVIEDDNITVPRLPTKELCKLNEDRDSIPSFDLLDESFEEVEGVRAFGVVEDECKSITEKTVFDHIREKAKNFSLLSAYDNIHFPSLEVLLSRNHAREKRPDHRHEVVVLDDEDRPEVPQRNDVNLQVELRKAEQDDIKFYLNDHCTTGSSNIVDTGVFLPEPEAITHEKSTEETVFDHIRRKSKDFPPINKLNCAESIIHKTELFSKINPSPPSSLSDAFGVARETNSLEVTDNMLTSYMKTAAEVEKYTSSIQEERKRSSDPGSFPESSKKQRCASRDSKEEKHSSSEIRRQCCSLESTSQMKEIESFLGFKSVFSFL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo