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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G40650.1 | AT | succinate dehydrogenase 2-2 | JGI | N/A | IEA |
| GO:0006099 | GO-bp | tricarboxylic acid cycle | EnsemblGenomes | N/A | IEA |
| GO:0022900 | GO-bp | electron transport chain | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0005739 | GO-cc | mitochondrion | EnsemblGenomes | N/A | IEA |
| GO:0005743 | GO-cc | mitochondrial inner membrane | EnsemblGenomes | N/A | IEA |
| GO:0008177 | GO-mf | succinate dehydrogenase (ubiquinone) activity | EnsemblGenomes | N/A | IEA |
| GO:0009055 | GO-mf | electron transfer activity | EnsemblGenomes | N/A | IEA |
| GO:0009055 | GO-mf | electron carrier activity | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0051536 | GO-mf | iron-sulfur cluster binding | EnsemblGenomes | N/A | IEA |
| GO:0051536 | GO-mf | iron-sulfur cluster binding | JGI | N/A | IEA |
| GO:0051537 | GO-mf | 2 iron, 2 sulfur cluster binding | EnsemblGenomes | N/A | IEA |
| GO:0051538 | GO-mf | 3 iron, 4 sulfur cluster binding | EnsemblGenomes | N/A | IEA |
| GO:0051539 | GO-mf | 4 iron, 4 sulfur cluster binding | EnsemblGenomes | N/A | IEA |
| KOG3049 | KOG | Succinate dehydrogenase, Fe-S protein subunit | JGI | N/A | IEA |
| PTHR11921 | Panther | SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN | JGI | N/A | IEA |
| PWY-3781 | SoyCyc9 | aerobic respiration I (cytochrome c) | Plant Metabolic Network | ISS | |
| PWY-4302 | SoyCyc9 | aerobic respiration III (alternative oxidase pathway) | Plant Metabolic Network | ISS | |
| PWY-5464 | SoyCyc9 | superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle | Plant Metabolic Network | ISS | |
| PWY-561 | SoyCyc9 | superpathway of glyoxylate cycle and fatty acid degradation | Plant Metabolic Network | ISS | |
| PWY-5690 | SoyCyc9 | TCA cycle II (plants and fungi) | Plant Metabolic Network | ISS | |
| GN7V-41030 | SoyCyc9-rxn | succinate dehydrogenase (ubiquinone) | Plant Metabolic Network | ISS |
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Glyma.16g066200 not represented in the dataset |
Glyma.16g066200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.19g080600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma16g07150 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.16g066200.1 sequence-type=CDS polypeptide=Glyma.16g066200.1.p locus=Glyma.16g066200 ID=Glyma.16g066200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 GCCCAGCAGGTGGAGCCCAAGGCCCGCGAAACCCCGACCCTCAAAACCTTCCAAATCTACCGCTGGAACCCCGAAAACCCCTCAAAGCCCGAGCTCAAGGACTACCAGATCAACCTAAAGGAGTGTGGGCCCATGGTCCTCGACGCGCTCATCAAGATCAAGAACGAGATCGACCCGAGCCTCACGTTCCGCCGCTCGTGCCGCGAGGGGATCTGCGGCTCCTGCGCAATGAACATCGACGGCTGCAACGGCCTGGCGTGCCTCACCAAGATCCCCTCGGAAAAAAACTCCGCCGCCACGACGATCACTCCTCTGCCGCACATGTTCGTGATCAAGGACCTGAGTATCGAGCCCTGGCTGAGGAAGAACCCACCGGTGCCGGGAAAAGAGATTCTGCAGAGCAAGAAGGAGAGGGAGAAGCTCGACGGGATGTACGAGTGCATTCTCTGCGCCTGCTGTAGCACCTCTTGCCCCAGCTACTGGTGGAACCCCGAGTCCTATCTCGGTCCCGCTGCGTTGCTCCACGCTAATAGGTGGATAAGCGACAGCCGTGATGAGTACACTAAGGAGAGATTGGATGCCATTAATGATGAATTCAAGCTCTATCGCTGCCACACCATATTGAACTGTGCTCGTGCCTGCCCAAAGGGGTTGAACCCAGGAAAGCAAATCTCACATATCAAGTCACTTCAGCCTAAAGCTTAA
>Glyma.16g066200.1.p sequence-type=predicted peptide transcript=Glyma.16g066200.1 locus=Glyma.16g066200 ID=Glyma.16g066200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 AQQVEPKARETPTLKTFQIYRWNPENPSKPELKDYQINLKECGPMVLDALIKIKNEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIPSEKNSAATTITPLPHMFVIKDLSIEPWLRKNPPVPGKEILQSKKEREKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLDAINDEFKLYRCHTILNCARACPKGLNPGKQISHIKSLQPKA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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