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Report for Sequence Feature Glyma.16g058000

Feature Type:gene_model
Chromosome:Gm16
Start:5674056
stop:5677758
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.16g058000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G15750.1AT Alpha-L RNA-binding motif/Ribosomal protein S4 family protein JGI N/AIEA
GO:0006364GO-bp rRNA processing EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0032040GO-cc small-subunit processome EnsemblGenomesN/AIEA
GO:0034457GO-cc Mpp10 complex EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding JGI N/AIEA
GO:0019843GO-mf rRNA binding EnsemblGenomesN/AIEA
GO:0030515GO-mf snoRNA binding EnsemblGenomesN/AIEA
KOG4655 KOG U3 small nucleolar ribonucleoprotein (snoRNP) component JGI N/AIEA
PTHR11831Panther 30S 40S RIBOSOMAL PROTEIN JGI N/AIEA
PTHR11831:SF1Panther U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3 JGI N/AIEA
PF01479PFAM S4 domain JGI N/AIEA

Expression Patterns of Glyma.16g058000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.16g058000 not represented in the dataset
Glyma.16g058000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.16g058000
ParalogEvidenceComments
Glyma.19g089300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.16g058000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma16g06220 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.16g058000
>Glyma.16g058000.2 sequence-type=transcript locus=Glyma.16g058000 ID=Glyma.16g058000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAGAGACTAGATATTGGGAAAAATCCAATCCAATATAGATTATATAAGTAGGAGACAACTCTCATCCTATGAGCTAGGTTTTGGGGTTGAGTTTAGCTCAAACCCACATTCATAAGATGATATCAGAGCCTATCGTAGATCCATTAAATGAGTCACTCACCATATCATTCACGCACCAAGTTCAGAAGTGTTGGACGTAAGGGGGTGTATTGGAAAAATTTCAAGTCCCACAATGGTCAGAGAAAGTGAAAAACAACGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAGGTAATTTTTTTGGAATGGAAGAGGGAAGGGGGTCACAGAGAGAACCTGATTATGCAACGCTACCATATTACTGGATTGGACGATTACAAAAAATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACAGATGGATCAAAAGGATCCTTTTCGGATTGATATGACTGACAAGCTTCTGGAAAAACTTTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCATGCTATGCAAACGCTTAACTGTGTCATCCTTCTGCAGGCATAGGCTCTCAACAGTTTTGGTGCGACTAAAATTTGCAGAGCACTTGAAAGAAGCCGTCACATACATTGAGCAAGGGCATATACGAGTTGGTCCAGAGACAGTTACAGACCCAGCTTTCCTTGTAACTAGAAACATGGAAGACTTCGTTACATTGGTGGATTCATTCAAAATAAAGAGAAAGGTGCTTCAGTACAATGACAAGTTGGATGACTATGATTTAATGAATTAA
Coding sequences of Glyma.16g058000
>Glyma.16g058000.1 sequence-type=CDS polypeptide=Glyma.16g058000.1.p locus=Glyma.16g058000 ID=Glyma.16g058000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGAGGAAGCTAAAGTTTCATGAAAAGAAGCTTTTGAAGAAGGTAATTTTTTTGGAATGGAAGAGGGAAGGGGGTCACAGAGAGAACCTGATTATGCAACGCTACCATATTACTGGATTGGACGATTACAAAAAATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACAGATGGATCAAAAGGATCCTTTTCGGATTGATATGACTGACAAGCTTCTGGAAAAACTTTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCATGCTATGCAAACGCTTAACTGTGTCATCCTTCTGCAGGCATAGGCTCTCAACAGTTTTGGTGCGACTAAAATTTGCAGAGCACTTGAAAGAAGCCGTCACATACATTGAGCAAGGGCATATACGAGTTGGTCCAGAGACAGTTACAGACCCAGCTTTCCTTGTAACTAGAAACATGGAAGACTTCGTTACATTGGTGGATTCATTCAAAATAAAGAGAAAGGTGCTTCAGTACAATGACAAGTTGGATGACTATGATTTAATGAATTAA

>Glyma.16g058000.2 sequence-type=CDS polypeptide=Glyma.16g058000.2.p locus=Glyma.16g058000 ID=Glyma.16g058000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAACGCTACCATATTACTGGATTGGACGATTACAAAAAATATTCAGGTTTATGCCATATGGTTCAGAAGTTAGTAAACATATTGAAACAGATGGATCAAAAGGATCCTTTTCGGATTGATATGACTGACAAGCTTCTGGAAAAACTTTACAACATGGGTGTGATTCCAACCAGGCAAAGCATCATGCTATGCAAACGCTTAACTGTGTCATCCTTCTGCAGGCATAGGCTCTCAACAGTTTTGGTGCGACTAAAATTTGCAGAGCACTTGAAAGAAGCCGTCACATACATTGAGCAAGGGCATATACGAGTTGGTCCAGAGACAGTTACAGACCCAGCTTTCCTTGTAACTAGAAACATGGAAGACTTCGTTACATTGGTGGATTCATTCAAAATAAAGAGAAAGGTGCTTCAGTACAATGACAAGTTGGATGACTATGATTTAATGAATTAA
Predicted protein sequences of Glyma.16g058000
>Glyma.16g058000.1.p sequence-type=predicted peptide transcript=Glyma.16g058000.1 locus=Glyma.16g058000 ID=Glyma.16g058000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGRKLKFHEKKLLKKVIFLEWKREGGHRENLIMQRYHITGLDDYKKYSGLCHMVQKLVNILKQMDQKDPFRIDMTDKLLEKLYNMGVIPTRQSIMLCKRLTVSSFCRHRLSTVLVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFVTLVDSFKIKRKVLQYNDKLDDYDLMN*

>Glyma.16g058000.2.p sequence-type=predicted peptide transcript=Glyma.16g058000.2 locus=Glyma.16g058000 ID=Glyma.16g058000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQRYHITGLDDYKKYSGLCHMVQKLVNILKQMDQKDPFRIDMTDKLLEKLYNMGVIPTRQSIMLCKRLTVSSFCRHRLSTVLVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFVTLVDSFKIKRKVLQYNDKLDDYDLMN*






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