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Report for Sequence Feature Glyma.16g057700

Feature Type:gene_model
Chromosome:Gm16
Start:5656328
stop:5663040
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.16g057700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G27180.1AT S-adenosyl-L-methionine-dependent methyltransferases superfamily protein JGI N/AIEA
GO:0001510GO-bp RNA methylation EnsemblGenomesN/AIEA
GO:0006396GO-bp RNA processing EnsemblGenomesN/AIEA
GO:0031167GO-bp rRNA methylation JGI N/AIEA
GO:0032259GO-bp methylation EnsemblGenomesN/AIEA
GO:0008168GO-mf methyltransferase activity EnsemblGenomesN/AIEA
GO:0008168GO-mf methyltransferase activity JGI N/AIEA
GO:0008173GO-mf RNA methyltransferase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
PTHR11061Panther RNA M5U METHYLTRANSFERASE FAMILY JGI N/AIEA
PF05175PFAM Methyltransferase small domain JGI N/AIEA

Expression Patterns of Glyma.16g057700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.16g057700 not represented in the dataset
Glyma.16g057700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.16g057700
ParalogEvidenceComments
Glyma.19g089700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.16g057700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma16g06200 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.16g057700
>Glyma.16g057700.2 sequence-type=transcript locus=Glyma.16g057700 ID=Glyma.16g057700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TATGTTTTATAAATTTCCATGTATATAACAGAAACGTGTTTCTATTATGTTTCTATCCAAGGGATAATTTGGAAATACAATTAAAAGACACCCATGTAAGTAGTGCCAATAGGAAAAATGGTAGAGCCAATAACAACCCCATTGAAAAGGTAGGTACCTCAGAATCAGAAACAACATGCTAATAGGATTATGTTGGGCTTGAGATTAAAGCCCATTTATAGGGGTTGGGTCCACTTTCCCACAACTCCGCTACAGATATTATAGGAACTACTTATAAAGATAATTTGTAATTATTATCCATTCCCACGTCGTACCGGAAAAATGACACTCCGTCTAGTGTCAGCTCCGCCGTCGTTCTCTCTCTTCTCCTGCCGCGCCACCGCATCCACCGCCCTCCCTCcgccgacaccgacgccgacgccggcgccgacgcTTATTTCTTCAATTCCACAGTCCCCGCCGCTAACATGCGCACTTCACTGTCCGCACTTCCAATCGTGTTCGGGGTGCACGCACGAGTTCAATCTCCACCGTCCGGTGATATTGGACGACGCCACCAATTTCTTTCGGAAACACGGCGTCTCCGACTTCACATTTGACACGTGCAAACTGTGGGGTTGGAGGTGCCGTGCGAAATTGGCCGTGCGTGGCTCTTCGACGGAGCCTCTCATTGGGCTCTATGAGGAGGGTACTCATAACGTAGTTGACATTCCACAATGCCAAGCTCATCATCCTAATATTAATGCTGCTGTGGAGCTGCTTAGACGGGGTATTATTGAAATAGGTGTTGAGCCATATATTGAAGATGAAGGTACTGGTGATTTGCGATATGTCCAGATGGCTGTGACAACATATAACACATCTCTTCCTGCGGCTCAAAGATATAAGAATGGAAAGGTTCAGGTTACATTGGTTTGGAATTCAAGAAATGAAAACTCACCCGGTTCAGACAAACTGAATGCATTAGCAAATTTTCTGTGGAAAAATGGTGGTCAAAGGAGCAGGCTTCATTTAATTCACTCTGTGTGGGCCAACTTTCAGACTTCTACTAACAATATAATTTTTGGGAATAAATGGAGACATCTTCTTGGAGAAAGAGATTTTTGGGAACACGTTGGTGGAATTGATGTATCCTTGGCACCTTCTAGTTTTGGCCAGGCAAACACACGGGCTTTTGATGCCTTGCTTCGGAGGTTACAGAAATATGTTCCATATGAATCAGATGTTGCTGATTTGTATGCTGGAGCTGGGGTCATTGGGTTGTCATTAGCTGCCACAAGAAAGTGCAGATCTATTAAATGCATCGAGATTAACAAAGAGTCAAAGGCATCTTTTGAGAAGACCATTGAACGGTTACCTGCCACCGTTGACAGCAGTATTACTTGGCATCATGCAGATGCTTCAAAAGAGCCCTTTTTGTGGCTTTTGGGTTCAGATGTTGTCGTCATTGATCCTCCCAGGAAAGGACTAGATGCATCTCTTATTGATGCATTGAAGAATATATCATCAGTCGAGCGTAAAGCCTTTTCATCTTCTGGAAGGTTGTAATTTTGTAAACCTATCAAGTTTAGTTAAACGGAAAATATTTCCCCAAGCCAGTTTTTGATTTAGTGCAAGTTAACTGCAGCTCAAACTCATCCCAGGAAGAGAAGAGACCTTGGGTTTTACGTGCTAAAGAAGATTCAGTCCAAATTGGAAGCAAACCTCCAACTAACATAGCTCAATCAGTGCCACAAACCCTTATTTATATAAGTTGCGGATGGGAAAGTTTTAAAGAGGACTGCAAGTCATTGTTGTCTAGTAAGGCATGGTATTTGGAAAAAGCTCATGGTTTTAATTTCTTTCCTGGCACCCAGAGCATTGAAGTTCTAGCAGTGTTCAAGAGGGGCCCTCagaaaaagaaacaaggaaagaaaaagaaaaaACACTTGCAAGGAGCTGTGAGACATTAATTAGTACATGGTTCAATATGCCGGTTTTCATGTACACCAGCAAATCAGTGTGAGATCCTGCAGGGAGGAAAAGAAATGGATATGTTTTGTAGCAGTCTCGATTGGGAAAAATTTACCATGGCCTTTTTTTGGGTGGGTGGGTGGGGGGAAAT
Coding sequences of Glyma.16g057700
>Glyma.16g057700.1 sequence-type=CDS polypeptide=Glyma.16g057700.1.p locus=Glyma.16g057700 ID=Glyma.16g057700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACACTCCGTCTAGTGTCAGCTCCGCCGTCGTTCTCTCTCTTCTCCTGCCGCGCCACCGCATCCACCGCCCTCCCTCCGCCGACACCGACGCCGACGCCGGCGCCGACGCTTATTTCTTCAATTCCACAGTCCCCGCCGCTAACATGCGCACTTCACTGTCCGCACTTCCAATCGTGTTCGGGGTGCACGCACGAGTTCAATCTCCACCGTCCGGTGATATTGGACGACGCCACCAATTTCTTTCGGAAACACGGCGTCTCCGACTTCACATTTGACACGTGCAAACTGTGGGGTTGGAGGTGCCGTGCGAAATTGGCCGTGCGTGGCTCTTCGACGGAGCCTCTCATTGGGCTCTATGAGGAGGGTACTCATAACGTAGTTGACATTCCACAATGCCAAGCTCATCATCCTAATATTAATGCTGCTGTGGAGCTGCTTAGACGGGGTATTATTGAAATAGGTGTTGAGCCATATATTGAAGATGAAGGTACTGGTGATTTGCGATATGTCCAGATGGCTGTGACAACATATAACACATCTCTTCCTGCGGCTCAAAGATATAAGAATGGAAAGGTTCAGGTTACATTGGTTTGGAATTCAAGAAATGAAAACTCACCCGGTTCAGACAAACTGAATGCATTAGCAAATTTTCTGTGGAAAAATGGTGGTCAAAGGAGCAGGCTTCATTTAATTCACTCTGTGTGGGCCAACTTTCAGACTTCTACTAACAATATAATTTTTGGGAATAAATGGAGACATCTTCTTGGAGAAAGAGATTTTTGGGAACACGTTGGTGGAATTGATGTATCCTTGGCACCTTCTAGTTTTGGCCAGGCAAACACACGGGCTTTTGATGCCTTGCTTCGGAGGTTACAGAAATATGTTCCATATGAATCAGATGTTGCTGATTTGTATGCTGGAGCTGGGGTCATTGGGTTGTCATTAGCTGCCACAAGAAAGTGCAGATCTATTAAATGCATCGAGATTAACAAAGAGTCAAAGGCATCTTTTGAGAAGACCATTGAACGGTTACCTGCCACCGTTGACAGCAGTATTACTTGGCATCATGCAGATGCTTCAAAAGAGCCCTTTTTGTGGCTTTTGGGTTCAGATGTTGTCGTCATTGATCCTCCCAGGAAAGGACTAGATGCATCTCTTATTGATGCATTGAAGAATATATCATCAGTCGAGCGTAAAGCCTTTTCATCTTCTGGAAGCTCAAACTCATCCCAGGAAGAGAAGAGACCTTGGGTTTTACGTGCTAAAGAAGATTCAGTCCAAATTGGAAGCAAACCTCCAACTAACATAGCTCAATCAGTGCCACAAACCCTTATTTATATAAGTTGCGGATGGGAAAGTTTTAAAGAGGACTGCAAGTCATTGTTGTCTAGTAAGGCATGGTATTTGGAAAAAGCTCATGGTTTTAATTTCTTTCCTGGCACCCAGAGCATTGAAGTTCTAGCAGTGTTCAAGAGGGGCCCTCAGAAAAAGAAACAAGGAAAGAAAAAGAAAAAACACTTGCAAGGAGCTGTGAGACATTAA

>Glyma.16g057700.2 sequence-type=CDS polypeptide=Glyma.16g057700.2.p locus=Glyma.16g057700 ID=Glyma.16g057700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACACTCCGTCTAGTGTCAGCTCCGCCGTCGTTCTCTCTCTTCTCCTGCCGCGCCACCGCATCCACCGCCCTCCCTCCGCCGACACCGACGCCGACGCCGGCGCCGACGCTTATTTCTTCAATTCCACAGTCCCCGCCGCTAACATGCGCACTTCACTGTCCGCACTTCCAATCGTGTTCGGGGTGCACGCACGAGTTCAATCTCCACCGTCCGGTGATATTGGACGACGCCACCAATTTCTTTCGGAAACACGGCGTCTCCGACTTCACATTTGACACGTGCAAACTGTGGGGTTGGAGGTGCCGTGCGAAATTGGCCGTGCGTGGCTCTTCGACGGAGCCTCTCATTGGGCTCTATGAGGAGGGTACTCATAACGTAGTTGACATTCCACAATGCCAAGCTCATCATCCTAATATTAATGCTGCTGTGGAGCTGCTTAGACGGGGTATTATTGAAATAGGTGTTGAGCCATATATTGAAGATGAAGGTACTGGTGATTTGCGATATGTCCAGATGGCTGTGACAACATATAACACATCTCTTCCTGCGGCTCAAAGATATAAGAATGGAAAGGTTCAGGTTACATTGGTTTGGAATTCAAGAAATGAAAACTCACCCGGTTCAGACAAACTGAATGCATTAGCAAATTTTCTGTGGAAAAATGGTGGTCAAAGGAGCAGGCTTCATTTAATTCACTCTGTGTGGGCCAACTTTCAGACTTCTACTAACAATATAATTTTTGGGAATAAATGGAGACATCTTCTTGGAGAAAGAGATTTTTGGGAACACGTTGGTGGAATTGATGTATCCTTGGCACCTTCTAGTTTTGGCCAGGCAAACACACGGGCTTTTGATGCCTTGCTTCGGAGGTTACAGAAATATGTTCCATATGAATCAGATGTTGCTGATTTGTATGCTGGAGCTGGGGTCATTGGGTTGTCATTAGCTGCCACAAGAAAGTGCAGATCTATTAAATGCATCGAGATTAACAAAGAGTCAAAGGCATCTTTTGAGAAGACCATTGAACGGTTACCTGCCACCGTTGACAGCAGTATTACTTGGCATCATGCAGATGCTTCAAAAGAGCCCTTTTTGTGGCTTTTGGGTTCAGATGTTGTCGTCATTGATCCTCCCAGGAAAGGACTAGATGCATCTCTTATTGATGCATTGAAGAATATATCATCAGTCGAGCGTAAAGCCTTTTCATCTTCTGGAAGGTTGTAA
Predicted protein sequences of Glyma.16g057700
>Glyma.16g057700.1.p sequence-type=predicted peptide transcript=Glyma.16g057700.1 locus=Glyma.16g057700 ID=Glyma.16g057700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTLRLVSAPPSFSLFSCRATASTALPPPTPTPTPAPTLISSIPQSPPLTCALHCPHFQSCSGCTHEFNLHRPVILDDATNFFRKHGVSDFTFDTCKLWGWRCRAKLAVRGSSTEPLIGLYEEGTHNVVDIPQCQAHHPNINAAVELLRRGIIEIGVEPYIEDEGTGDLRYVQMAVTTYNTSLPAAQRYKNGKVQVTLVWNSRNENSPGSDKLNALANFLWKNGGQRSRLHLIHSVWANFQTSTNNIIFGNKWRHLLGERDFWEHVGGIDVSLAPSSFGQANTRAFDALLRRLQKYVPYESDVADLYAGAGVIGLSLAATRKCRSIKCIEINKESKASFEKTIERLPATVDSSITWHHADASKEPFLWLLGSDVVVIDPPRKGLDASLIDALKNISSVERKAFSSSGSSNSSQEEKRPWVLRAKEDSVQIGSKPPTNIAQSVPQTLIYISCGWESFKEDCKSLLSSKAWYLEKAHGFNFFPGTQSIEVLAVFKRGPQKKKQGKKKKKHLQGAVRH*

>Glyma.16g057700.2.p sequence-type=predicted peptide transcript=Glyma.16g057700.2 locus=Glyma.16g057700 ID=Glyma.16g057700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTLRLVSAPPSFSLFSCRATASTALPPPTPTPTPAPTLISSIPQSPPLTCALHCPHFQSCSGCTHEFNLHRPVILDDATNFFRKHGVSDFTFDTCKLWGWRCRAKLAVRGSSTEPLIGLYEEGTHNVVDIPQCQAHHPNINAAVELLRRGIIEIGVEPYIEDEGTGDLRYVQMAVTTYNTSLPAAQRYKNGKVQVTLVWNSRNENSPGSDKLNALANFLWKNGGQRSRLHLIHSVWANFQTSTNNIIFGNKWRHLLGERDFWEHVGGIDVSLAPSSFGQANTRAFDALLRRLQKYVPYESDVADLYAGAGVIGLSLAATRKCRSIKCIEINKESKASFEKTIERLPATVDSSITWHHADASKEPFLWLLGSDVVVIDPPRKGLDASLIDALKNISSVERKAFSSSGRL*






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