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Report for Sequence Feature Glyma.16g053900

Feature Type:gene_model
Chromosome:Gm16
Start:5255082
stop:5257112
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.16g053900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G27010.1AT TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
PTHR11584Panther SERINE/THREONINE PROTEIN KINASE JGI N/AIEA
PTHR11584:SF275Panther JGI N/AIEA
PF03634PFAM TCP family transcription factor JGI N/AIEA

Proteins Associated with Glyma.16g053900
LocusGene SymbolProtein Name
TCP20 Teosinte branched1 and cycloidea and proliferating cell factor family proteingene 20

Expression Patterns of Glyma.16g053900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.16g053900
ParalogEvidenceComments
Glyma.19g095300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.16g053900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma16g05840 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.16g053900
>Glyma.16g053900.1 sequence-type=CDS polypeptide=Glyma.16g053900.1.p locus=Glyma.16g053900 ID=Glyma.16g053900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCCCAAGGGCTCAAAGCAGCAGCCACAGCAATCACAGGAGGTGGTACCAAACTTCCTCAGCCTCCCCCAACAGCAACAAGGGAATACCAACAACAACAACATGGGAGAGAACAAACCTGCAGAGGTGAAGGATTTCCAGATAGTGGTAGCTGAGAACAAGGAAGAGAGCAAGAAACAGCAGCAACAGTTGGCACCAAAGAGGAGTTCCAACAAGGACAGGCACACCAAGGTTGAAGGCAGGGGAAGGAGGATAAGGATGCCTGCTCTCTGCGCAGCCAGAATCTTCCAGTTGACCAGGGAATTGGGTCACAAATCTGATGGGGAAACCATCCAGTGGCTCCTCCAGCAGGCTGAGCCATCCATCATAGCTGCCACTGGGACTGGCACAATACCAGCATCTGCTCTTGCTGCTGCTGGAAACTCACTCTCACCACAAGCTGCTTCTCTTTCATCATCCTTGCACCAACATCAACAAAAGATTGATGAATTGGGTGGGTCAGGGGGGAGTAGTAGTAGGGCCAGCTGGCAAATGGTTGGGGGGAATTTGGGGAGACCCCATTTGGGTGTGGGTGTGGCCACAGCAGCAGGCCTATGGCCCCCTCATGTCAGTGGATTTGGATTTCAAACACCACCAACAACAACAACACCAACAACAACAACATCATCATCTGGTCCATCTAATGCCACCTTAGCCACTGAGAGCTCCAATTACCTTCAGAAAATTGCATTCCCTGGCTTTGACTTGCCTACTTCTGCCACTAACATGATGGGTCACATGAGTTTCACCTCAATTTTGGGTGGAGGTGGGGGTGGTGGGGCCCAGCATATGCCTGGCTTGGAGCTTGGTCTTTCCCAGGATGGCCATATTGGGGTGTTGAATCAACAGGCCTTGAACCAGATTTATCAGCAGATGAATCAGGCTGGTAGAGTGCATCATCATCAGCATCAGCATCATCATCAGCATCATCAGCAGCAACAACACCATCAGCAAACTCCTGCTAAGGATGATTCTCAAGGCTCAGGAGGACAGTAG
Predicted protein sequences of Glyma.16g053900
>Glyma.16g053900.1.p sequence-type=predicted peptide transcript=Glyma.16g053900.1 locus=Glyma.16g053900 ID=Glyma.16g053900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDPKGSKQQPQQSQEVVPNFLSLPQQQQGNTNNNNMGENKPAEVKDFQIVVAENKEESKKQQQQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGNSLSPQAASLSSSLHQHQQKIDELGGSGGSSSRASWQMVGGNLGRPHLGVGVATAAGLWPPHVSGFGFQTPPTTTTPTTTTSSSGPSNATLATESSNYLQKIAFPGFDLPTSATNMMGHMSFTSILGGGGGGGAQHMPGLELGLSQDGHIGVLNQQALNQIYQQMNQAGRVHHHQHQHHHQHHQQQQHHQQTPAKDDSQGSGGQ*






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