SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.16g050900

Feature Type:gene_model
Chromosome:Gm16
Start:4874634
stop:4878624
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.16g050900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G28050.1AT B-box type zinc finger protein with CCT domain JGI N/AIEA
AT2G33500.1AT B-box type zinc finger protein with CCT domain JGI N/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
PF06203PFAM CCT motif JGI N/AIEA

Proteins Associated with Glyma.16g050900
LocusGene SymbolProtein Name
COL16 zinc finger protein CONSTANS-LIKE 15

Expression Patterns of Glyma.16g050900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.16g050900
ParalogEvidenceComments
Glyma.19g099700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.16g050900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma16g05540 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.16g050900
>Glyma.16g050900.2 sequence-type=transcript locus=Glyma.16g050900 ID=Glyma.16g050900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCAGTGACGAAATATCTTTTCCTCCTCGTTGTCCCCACTGGTCCATTTCACAATTGAGATTTTGCGTTCAGCTTCCTCCCATGCTTATCACCATTCACCATTCACCACCATGTTGCCATGCGATTACTGCCATTCCAAACCCGCCATACTCTTCTGCAGACCAGATTCCGCTAAACTATGCTTGCTATGCGACCAGCACGTGCACGCCGCCAACGCCCTCTCCCTCAAGCACGTGCGCTTCCAGATTTGCGACTCCTGCAAGACCGACACCGCTGTCCTCCGCTGCTCCACCGACAACCTCGTCCTCTGCCACCACTGCGATGTGGAAACCCACGGTGCTGCCGCTTCCTCCCACCACCAACGTCACCGCCTCCACGGCCTCTCCGGCTGCCCCTCCGTCACGGAGATCGTCTCCGCGCTGTGCCTCGATTTCCGGGCCCAGGATCCCGTGGTCCCCACCGCCGCCTCCGGCGGTCGCGATGAGGTGTACGAGCAGGTGCTGGAAATCGCGCGGCAGAGGAACGACGACCTCGGCGCCGAACAACTCAAGTTCGACGAATCCCCCATAAACGACGTCGTTGTTGTTGACGAGATGCTGATGCAGCAAACGCCGTTCACGTCTTTGCTTATGTTGCCAAATTCCGAATCTGAATTCGACTCCCGAAAAAGTAACGATAACAACGGTTACGGAACCGAGGCAGGGGATCTTCTCTGGAATTATAACCCCGCGTATCAGCCTCCTCAGGTGTGGGATTTTCAGTTACAAAAATCAAGAGATTGCCATGAACCAAGAGTTGTAACATTTGATGGTCTAGAAGTTCCAAAATTATTTCAGGATGAGCACAATATGAAGTACTCAACAATTGGTGATGACATTGATATTCTATCAAGAAATCTGCATCCATATCATTTAAAAGCCGAAGATGCAATCATGCTTCTCATTCTCAAGTGAGATGGTGCAGAGAGTATGTGATAACCACCATCTCTATGTTTCACATGGAATCAATCGGATCAGTCATCATCAAGCCATGCAAAGAAGAAAGAAGAGAACAACAAAAAAGCTAAAGGTGGGTTATCATCAGAGTCCAAACTGTTTGAATCCATACCGTACAATGGCACCAACAATGTCGTAGTCATGGAGCATCTTGTTGGTGGGAATGAAAATGTTGGCACCTTAACAGCCAGGGTTAGTTTGGAAGAGTTGGCTAAGAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAGGTACGATAAGCACATTCGCTATGAATCAAGGAAGGCCAGGGCTGATACTAGAAAAAGGGTGAGAGGGAGATTTGTGAAGGCAAGTGATGTTCAAGCGTGATGATGAGTGCCTTTTCAGAAATCTCATCCGAGTTCAATGCTCGTGTGTGTGTACATAAGTTACACTATAAGAGAAATATGGATATATTATAGTTTTCATGAACTCCCTGAGCAttgattgatttgaatcttttttggtagttgatttatttgaatttttgtttgttACATTATATGGGAAGAGTTTTTTTTGTGTGAGATTCTCTCATAAGAGGGTGATATATAAGAGAGACACTGACAATAAATTGGTGAGTTTGTGTTAGAATTTGTGGAGTTATGGTAAAAGTCTCTTGTGTCTCAATCTCTTTCCACGTAATATGGTCACGTGGAAATCTCACATAA

>Glyma.16g050900.3 sequence-type=transcript locus=Glyma.16g050900 ID=Glyma.16g050900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCAGTGACGAAATATCTTTTCCTCCTCGTTGTCCCCACTGGTCCATTTCACAATTGAGATTTTGCGTTCAGCTTCCTCCCATGCTTATCACCATTCACCATTCACCACCATGTTGCCATGCGATTACTGCCATTCCAAACCCGCCATACTCTTCTGCAGACCAGATTCCGCTAAACTATGCTTGCTATGCGACCAGCACGTGCACGCCGCCAACGCCCTCTCCCTCAAGCACGTGCGCTTCCAGATTTGCGACTCCTGCAAGACCGACACCGCTGTCCTCCGCTGCTCCACCGACAACCTCGTCCTCTGCCACCACTGCGATGTGGAAACCCACGGTGCTGCCGCTTCCTCCCACCACCAACGTCACCGCCTCCACGGCCTCTCCGGCTGCCCCTCCGTCACGGAGATCGTCTCCGCGCTGTGCCTCGATTTCCGGGCCCAGGATCCCGTGGTCCCCACCGCCGCCTCCGGCGGTCGCGATGAGGTGTACGAGCAGGTGCTGGAAATCGCGCGGCAGAGGAACGACGACCTCGGCGCCGAACAACTCAAGTTCGACGAATCCCCCATAAACGACGTCGTTGTTGTTGACGAGATGCTGATGCAGCAAACGCCGTTCACGTCTTTGCTTATGTTGCCAAATTCCGAATCTGAATTCGACTCCCGAAAAAGTAACGATAACAACGGTTACGGAACCGAGGCAGGGGATCTTCTCTGGAATTATAACCCCGCGTATCAGCCTCCTCAGGTGTGGGATTTTCAGTTACAAAAATCAAGAGATTGCCATGAACCAAGAGTTGTAACATTTGATGGTCTAGAAGTTCCAAAATTATTTCAGGATGAGCACAATATGAAGTACTCAACAATTGGTGATGACATTGATATTCTATCAAGAAATAATCAATCGGATCAGTCATCATCAAGCCATGCAAAGAAGAAAGAAGAGAACAACAAAAAAGCTAAAGGTGGGTTATCATCAGAGTCCAAACTGTTTGAATCCATACCGTACAATGGCACCAACAATGTCGTAGTCATGGAGCATCTTGTTGGTGGGAATGAAAATGTTGGCACCTTAACAGCCAGGGTTAGTTTGGAAGAGTTGGCTAAGAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAGGTATGTTTAGTTTAATAGAATAAATAGTCTATACACTGCCAGCAT
Coding sequences of Glyma.16g050900
>Glyma.16g050900.1 sequence-type=CDS polypeptide=Glyma.16g050900.1.p locus=Glyma.16g050900 ID=Glyma.16g050900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGCCATGCGATTACTGCCATTCCAAACCCGCCATACTCTTCTGCAGACCAGATTCCGCTAAACTATGCTTGCTATGCGACCAGCACGTGCACGCCGCCAACGCCCTCTCCCTCAAGCACGTGCGCTTCCAGATTTGCGACTCCTGCAAGACCGACACCGCTGTCCTCCGCTGCTCCACCGACAACCTCGTCCTCTGCCACCACTGCGATGTGGAAACCCACGGTGCTGCCGCTTCCTCCCACCACCAACGTCACCGCCTCCACGGCCTCTCCGGCTGCCCCTCCGTCACGGAGATCGTCTCCGCGCTGTGCCTCGATTTCCGGGCCCAGGATCCCGTGGTCCCCACCGCCGCCTCCGGCGGTCGCGATGAGGTGTACGAGCAGGTGCTGGAAATCGCGCGGCAGAGGAACGACGACCTCGGCGCCGAACAACTCAAGTTCGACGAATCCCCCATAAACGACGTCGTTGTTGTTGACGAGATGCTGATGCAGCAAACGCCGTTCACGTCTTTGCTTATGTTGCCAAATTCCGAATCTGAATTCGACTCCCGAAAAAGTAACGATAACAACGGTTACGGAACCGAGGCAGGGGATCTTCTCTGGAATTATAACCCCGCGTATCAGCCTCCTCAGGTGTGGGATTTTCAGTTACAAAAATCAAGAGATTGCCATGAACCAAGAGTTGTAACATTTGATGGTCTAGAAGTTCCAAAATTATTTCAGGATGAGCACAATATGAAGTACTCAACAATTGGTGATGACATTGATATTCTATCAAGAAATAATCAATCGGATCAGTCATCATCAAGCCATGCAAAGAAGAAAGAAGAGAACAACAAAAAAGCTAAAGGTGGGTTATCATCAGAGTCCAAACTGTTTGAATCCATACCGTACAATGGCACCAACAATGTCGTAGTCATGGAGCATCTTGTTGGTGGGAATGAAAATGTTGGCACCTTAACAGCCAGGGTTAGTTTGGAAGAGTTGGCTAAGAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAGGTACGATAAGCACATTCGCTATGAATCAAGGAAGGCCAGGGCTGATACTAGAAAAAGGGTGAGAGGGAGATTTGTGAAGGCAAGTGATGTTCAAGCGTGA

>Glyma.16g050900.2 sequence-type=CDS polypeptide=Glyma.16g050900.2.p locus=Glyma.16g050900 ID=Glyma.16g050900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGCCATGCGATTACTGCCATTCCAAACCCGCCATACTCTTCTGCAGACCAGATTCCGCTAAACTATGCTTGCTATGCGACCAGCACGTGCACGCCGCCAACGCCCTCTCCCTCAAGCACGTGCGCTTCCAGATTTGCGACTCCTGCAAGACCGACACCGCTGTCCTCCGCTGCTCCACCGACAACCTCGTCCTCTGCCACCACTGCGATGTGGAAACCCACGGTGCTGCCGCTTCCTCCCACCACCAACGTCACCGCCTCCACGGCCTCTCCGGCTGCCCCTCCGTCACGGAGATCGTCTCCGCGCTGTGCCTCGATTTCCGGGCCCAGGATCCCGTGGTCCCCACCGCCGCCTCCGGCGGTCGCGATGAGGTGTACGAGCAGGTGCTGGAAATCGCGCGGCAGAGGAACGACGACCTCGGCGCCGAACAACTCAAGTTCGACGAATCCCCCATAAACGACGTCGTTGTTGTTGACGAGATGCTGATGCAGCAAACGCCGTTCACGTCTTTGCTTATGTTGCCAAATTCCGAATCTGAATTCGACTCCCGAAAAAGTAACGATAACAACGGTTACGGAACCGAGGCAGGGGATCTTCTCTGGAATTATAACCCCGCGTATCAGCCTCCTCAGGTGTGGGATTTTCAGTTACAAAAATCAAGAGATTGCCATGAACCAAGAGTTGTAACATTTGATGGTCTAGAAGTTCCAAAATTATTTCAGGATGAGCACAATATGAAGTACTCAACAATTGGTGATGACATTGATATTCTATCAAGAAATCTGCATCCATATCATTTAAAAGCCGAAGATGCAATCATGCTTCTCATTCTCAAGTGA

>Glyma.16g050900.3 sequence-type=CDS polypeptide=Glyma.16g050900.3.p locus=Glyma.16g050900 ID=Glyma.16g050900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGCCATGCGATTACTGCCATTCCAAACCCGCCATACTCTTCTGCAGACCAGATTCCGCTAAACTATGCTTGCTATGCGACCAGCACGTGCACGCCGCCAACGCCCTCTCCCTCAAGCACGTGCGCTTCCAGATTTGCGACTCCTGCAAGACCGACACCGCTGTCCTCCGCTGCTCCACCGACAACCTCGTCCTCTGCCACCACTGCGATGTGGAAACCCACGGTGCTGCCGCTTCCTCCCACCACCAACGTCACCGCCTCCACGGCCTCTCCGGCTGCCCCTCCGTCACGGAGATCGTCTCCGCGCTGTGCCTCGATTTCCGGGCCCAGGATCCCGTGGTCCCCACCGCCGCCTCCGGCGGTCGCGATGAGGTGTACGAGCAGGTGCTGGAAATCGCGCGGCAGAGGAACGACGACCTCGGCGCCGAACAACTCAAGTTCGACGAATCCCCCATAAACGACGTCGTTGTTGTTGACGAGATGCTGATGCAGCAAACGCCGTTCACGTCTTTGCTTATGTTGCCAAATTCCGAATCTGAATTCGACTCCCGAAAAAGTAACGATAACAACGGTTACGGAACCGAGGCAGGGGATCTTCTCTGGAATTATAACCCCGCGTATCAGCCTCCTCAGGTGTGGGATTTTCAGTTACAAAAATCAAGAGATTGCCATGAACCAAGAGTTGTAACATTTGATGGTCTAGAAGTTCCAAAATTATTTCAGGATGAGCACAATATGAAGTACTCAACAATTGGTGATGACATTGATATTCTATCAAGAAATAATCAATCGGATCAGTCATCATCAAGCCATGCAAAGAAGAAAGAAGAGAACAACAAAAAAGCTAAAGGTGGGTTATCATCAGAGTCCAAACTGTTTGAATCCATACCGTACAATGGCACCAACAATGTCGTAGTCATGGAGCATCTTGTTGGTGGGAATGAAAATGTTGGCACCTTAACAGCCAGGGTTAGTTTGGAAGAGTTGGCTAAGAATAGAGGGGATGCCATGTTGCGTTACAAGGAGAAGAAGAAAACTCGAAGGTATGTTTAG
Predicted protein sequences of Glyma.16g050900
>Glyma.16g050900.1.p sequence-type=predicted peptide transcript=Glyma.16g050900.1 locus=Glyma.16g050900 ID=Glyma.16g050900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLPCDYCHSKPAILFCRPDSAKLCLLCDQHVHAANALSLKHVRFQICDSCKTDTAVLRCSTDNLVLCHHCDVETHGAAASSHHQRHRLHGLSGCPSVTEIVSALCLDFRAQDPVVPTAASGGRDEVYEQVLEIARQRNDDLGAEQLKFDESPINDVVVVDEMLMQQTPFTSLLMLPNSESEFDSRKSNDNNGYGTEAGDLLWNYNPAYQPPQVWDFQLQKSRDCHEPRVVTFDGLEVPKLFQDEHNMKYSTIGDDIDILSRNNQSDQSSSSHAKKKEENNKKAKGGLSSESKLFESIPYNGTNNVVVMEHLVGGNENVGTLTARVSLEELAKNRGDAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVRGRFVKASDVQA*

>Glyma.16g050900.2.p sequence-type=predicted peptide transcript=Glyma.16g050900.2 locus=Glyma.16g050900 ID=Glyma.16g050900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLPCDYCHSKPAILFCRPDSAKLCLLCDQHVHAANALSLKHVRFQICDSCKTDTAVLRCSTDNLVLCHHCDVETHGAAASSHHQRHRLHGLSGCPSVTEIVSALCLDFRAQDPVVPTAASGGRDEVYEQVLEIARQRNDDLGAEQLKFDESPINDVVVVDEMLMQQTPFTSLLMLPNSESEFDSRKSNDNNGYGTEAGDLLWNYNPAYQPPQVWDFQLQKSRDCHEPRVVTFDGLEVPKLFQDEHNMKYSTIGDDIDILSRNLHPYHLKAEDAIMLLILK*

>Glyma.16g050900.3.p sequence-type=predicted peptide transcript=Glyma.16g050900.3 locus=Glyma.16g050900 ID=Glyma.16g050900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLPCDYCHSKPAILFCRPDSAKLCLLCDQHVHAANALSLKHVRFQICDSCKTDTAVLRCSTDNLVLCHHCDVETHGAAASSHHQRHRLHGLSGCPSVTEIVSALCLDFRAQDPVVPTAASGGRDEVYEQVLEIARQRNDDLGAEQLKFDESPINDVVVVDEMLMQQTPFTSLLMLPNSESEFDSRKSNDNNGYGTEAGDLLWNYNPAYQPPQVWDFQLQKSRDCHEPRVVTFDGLEVPKLFQDEHNMKYSTIGDDIDILSRNNQSDQSSSSHAKKKEENNKKAKGGLSSESKLFESIPYNGTNNVVVMEHLVGGNENVGTLTARVSLEELAKNRGDAMLRYKEKKKTRRYV*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo