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Report for Sequence Feature Glyma.16g049600

Feature Type:gene_model
Chromosome:Gm16
Start:4752096
stop:4768569
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.16g049600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G13540.1AT ARM repeat superfamily protein JGI N/AIEA
GO:0000184GO-bp nuclear-transcribed mRNA catabolic process, nonsense-mediated decay EnsemblGenomesN/AIEA
GO:0000398GO-bp mRNA splicing, via spliceosome EnsemblGenomesN/AIEA
GO:0006406GO-bp mRNA export from nucleus EnsemblGenomesN/AIEA
GO:0016070GO-bp RNA metabolic process EnsemblGenomesN/AIEA
GO:0016070GO-bp RNA metabolic process JGI N/AIEA
GO:0031053GO-bp primary miRNA processing EnsemblGenomesN/AIEA
GO:0045292GO-bp mRNA cis splicing, via spliceosome EnsemblGenomesN/AIEA
GO:0051028GO-bp mRNA transport EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005845GO-cc mRNA cap binding complex EnsemblGenomesN/AIEA
GO:0005846GO-cc nuclear cap binding complex EnsemblGenomesN/AIEA
GO:0000339GO-mf RNA cap binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding JGI N/AIEA
GO:0003729GO-mf mRNA binding EnsemblGenomesN/AIEA
GO:0005488GO-mf binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG1104 KOG Nuclear cap-binding complex, subunit NCBP1/CBP80 JGI N/AIEA
PTHR12412Panther CAP BINDING PROTEIN JGI N/AIEA
PF02854PFAM MIF4G domain JGI N/AIEA
PF09088PFAM MIF4G like JGI N/AIEA
PF09090PFAM MIF4G like JGI N/AIEA

Expression Patterns of Glyma.16g049600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.16g049600
ParalogEvidenceComments
Glyma.19g101600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.16g049600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma16g05410 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.16g049600
>Glyma.16g049600.1 sequence-type=CDS polypeptide=Glyma.16g049600.1.p locus=Glyma.16g049600 ID=Glyma.16g049600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCAGTTGGAGAAGCCTTCTTCTGCGAATTGGGGACAAGAGCCCCGAATATGGACCCTCCTCCGATTACAAAGATCACATTGATACGTGCTTTGGCGCCCTTCGCCGCGAGCTCGACCACTCCCAATCCGAGATTCTCGAGTTCCTTCTCATGTGTGCTGAGCAATTGCCTCACAAGATTCCTCTGTATGGTACCCTGATTGGCTTAATTAACTTGGAAAATGAAGACTTTGTGAAACAACTAGTGGAGAAAACTCAAAGTAAATTTCAGGATGCCTTAGATTCTGGAAACTGCAACGGGGTTCGTATTCTAATGCGGCTTTTGACTGTTATGATGAGCAGTAAGGTTCTTCAACCAAGCTCTTTGGTGGCTGTGTTCGAAACATTTTTATCATCAGCTGCCACAACAGTAGATGAGGAGAAAGGGAATCCCTTATGGCAGCCATGTGCTGACTTTTACATAACTTGCATTTTATCATGCCTCCCATGGGGTGGAGCAGAACTTACTGAGCAAGTTCCTGAAGATATCGAGAGAGTGATGGTTGGTGTAGAAGCTTACTTGAGCATCAGAAAGCATACATCAGATACTGGCTTATCCTTTTTTGAGAATGATGATGAAAATGGGGAAGGTCTTACTGACAAGGACTTTTTGGAAGATTTATGGGATAGAATACAGGTTTTATCAAGCAACGGATGGAAGGTTGACAGCGTTCCAAGACCTCATCTTTCATTTGAAGCTCAGCTGGTTGCTGGGAAGTCTCATGAATTTGGGCCAATATGCTGCCCCAGCTTACCAAGCCTGCCTTCAGTCCCTTCTGGCGTGTCTATTGGTAAACAGAAGCATGAAGCAGAATTAAAATATCCTCAAAGTATACACCGGCTTAACATATTTCCTCCTAGTAAAATTGAGGATCTACAGCCTATAGACAGATTTGTTATGGAAGAGTATCTCCTAGATGTGCTTCTGTTCTTAAATGGCTGTCGAAAGGAATGTGCTTCTTTCATGGTTGGCCTGCCAGTTTCCTTCAGATACGAGTACCTCATGGCGGAAACAATATTCTCTCAGCTGCTGATGCTACCACAACCACCTTTCAAACCAGTATATTACACATTGGTTATTATTGACCTTTGTAAGGCTCTTCCTGGAGCCTTTCCTGCAGTTGTAGCTGGAGCTGTTCGTACTCTCTTTGAGAGGATTGCTGATTTGGATATGGAGTGTCGGACGCGTCTGATCCTTTGGTTCTCACACCATTTATCAAACTTCCAGTTCATCTGGCCATGGGAAGAGTGGGCTTATGTCCTAGACCTCCCAAGGTGGGCCCCTCAACGTGTCTTTGTTCAAGAGGTTTTGGAGAGGGAAGTTCGCTTGTCATACTGGGACAAAGTTAAGCAGAGTATTGAAAATGCACCTGGTTTAGAAGAATTGCTTCCTCCAAAGGGTGGGCCGAACTTTAGTTTTGGTGCAGAAGATGATAAAGAAAGCAATGAACATGTACTGTCTGGACAGCTCAACAACATGGTTAAAGGAAAGGCACCTGTCCGTGAAATAATCTCATGGATTGATGAAAGTGTGCTTCCAAATAATGGTCTAGAAGTTACCCTCAGAGTGGTTGTACAAACTCTTCTCAATATTGGATCCAAGAGTTTCACTCATTTGATGACTGTCTTGGAGAGATATGGGCAAGTCTTTGCAAAATTATGTCCTGACCAGGATAAGCAAGTCATGCTGATAGCTGAAGTGAGTTCTTTCTGGAAGAGTAATACCCAAATGACAGCAATAGCTATTGACAGGATGATGGGTTATCGGCTTGTTTCAAATCTGGCTATTGTGAGATGGGTCTTCTCAGCAGAGAATATTGAGCAATTTCATATGTCAGATCGTCCTTGGGAGATTCTTAGAAATGCAGTAAGCAAGACACACAATCGTATTTCTGATCTAAGGAAAGAAATATTATCTCTTAAAAAGAATATTTCATCATCTGAAGAAGCTGCCAAGGAAGCAAAAGCAGAGTTAGATGCTGCAGAGTCAAAACTTACACTAGTGGATGGTGAACCAGTTATTGGCGACAATCCTGCTAGGTTGAATAGATTGAAATCACATGCTGAAAAGACAAAGGAGGAGGTGGTGTCTCTTCAAGAATCTTTAGAAGCCAAGGAAGCTCTTCTTTCCCGAGCAATTGAGGAAAATGAGGCATTGTTTCTCTTGTTGTACAAAAGCTTCTCAAACGTGTTGACAGAGCGCCTTCCTGAAGGATCTAGAACACTGCATGAGTTGAAGTCTGCACAAGTTGATGTGGTGATGGCAGTGGACCCTGAAGAGCCATCGTCAATGGAATTAGACAACCAGAATCAGAGACCTCAAAACAGTCATACAAATGGCGAGAAGAAAGGTGGTGCTTATAATGTAGGTGAAAAGGAGCAGTGGTGTATCACCACTTTGGGCTATGTGAAGGCCTTCTCTAGGCAGTATGCTGCTGAGATATGGCCCCATGTTGAGAAGTTGGATGCAGAGGTATTGACAGAAGATGCACCTCTTCTTTTTCGGTCAGCTGTTTATTCTGGTCTTCGAAGACCAATTCACGAGGCTTGA
Predicted protein sequences of Glyma.16g049600
>Glyma.16g049600.1.p sequence-type=predicted peptide transcript=Glyma.16g049600.1 locus=Glyma.16g049600 ID=Glyma.16g049600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSWRSLLLRIGDKSPEYGPSSDYKDHIDTCFGALRRELDHSQSEILEFLLMCAEQLPHKIPLYGTLIGLINLENEDFVKQLVEKTQSKFQDALDSGNCNGVRILMRLLTVMMSSKVLQPSSLVAVFETFLSSAATTVDEEKGNPLWQPCADFYITCILSCLPWGGAELTEQVPEDIERVMVGVEAYLSIRKHTSDTGLSFFENDDENGEGLTDKDFLEDLWDRIQVLSSNGWKVDSVPRPHLSFEAQLVAGKSHEFGPICCPSLPSLPSVPSGVSIGKQKHEAELKYPQSIHRLNIFPPSKIEDLQPIDRFVMEEYLLDVLLFLNGCRKECASFMVGLPVSFRYEYLMAETIFSQLLMLPQPPFKPVYYTLVIIDLCKALPGAFPAVVAGAVRTLFERIADLDMECRTRLILWFSHHLSNFQFIWPWEEWAYVLDLPRWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPGLEELLPPKGGPNFSFGAEDDKESNEHVLSGQLNNMVKGKAPVREIISWIDESVLPNNGLEVTLRVVVQTLLNIGSKSFTHLMTVLERYGQVFAKLCPDQDKQVMLIAEVSSFWKSNTQMTAIAIDRMMGYRLVSNLAIVRWVFSAENIEQFHMSDRPWEILRNAVSKTHNRISDLRKEILSLKKNISSSEEAAKEAKAELDAAESKLTLVDGEPVIGDNPARLNRLKSHAEKTKEEVVSLQESLEAKEALLSRAIEENEALFLLLYKSFSNVLTERLPEGSRTLHELKSAQVDVVMAVDPEEPSSMELDNQNQRPQNSHTNGEKKGGAYNVGEKEQWCITTLGYVKAFSRQYAAEIWPHVEKLDAEVLTEDAPLLFRSAVYSGLRRPIHEA*






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