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Report for Sequence Feature Glyma.16g049400

Feature Type:gene_model
Chromosome:Gm16
Start:4724783
stop:4728963
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.16g049400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G26744.1AT basic helix-loop-helix (bHLH) DNA-binding superfamily protein JGI N/AIEA
GO:0046983GO-mf protein dimerization activity EnsemblGenomesN/AIEA
GO:0046983GO-mf protein dimerization activity JGI N/AIEA
PTHR23042Panther CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS JGI N/AIEA
PTHR23042:SF24Panther JGI N/AIEA
PF00010PFAM Helix-loop-helix DNA-binding domain JGI N/AIEA

Expression Patterns of Glyma.16g049400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.16g049400
ParalogEvidenceComments
Glyma.19g102000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.16g049400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma16g05390 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.16g049400
>Glyma.16g049400.2 sequence-type=transcript locus=Glyma.16g049400 ID=Glyma.16g049400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTAACAGAACGCAGTTACTTCCTTCTTTTCCTTTCCTCTCTATCAGAACCTCATCATATCACACTCTGATGCGATAAGAGTTAAAGAAGAGAGTTTTGAGAGTTTCCTCCAAATAAAAAAATCAGTAACGGGAGCAGAGAGAAACAGACACACACTCACACATGGATAAACCACACCCCACCAACCGTTTCCCTCTCCATTCATTTTCTCGCCACAACAAAAAAACAAACATAGCAATATAGCATTATTATTACATAACCGttctgtttctcaccttcttctcctcacttttttttcttgttcttttccctcttctCCGTTTTTTCATGAATATGGAGCGCTACACGCTACCCGCACCACCCATTAATATTATTCTCgaggaagaagaagaagaagaaAACATTGCCATTGCCATGGGTGCCCCTCTTATCCCTTCCTTTAAATCCATGCTTcaacaccaacaacaacaacCTGACTCTTACTTCAACTTCAACTTTAACTCTTCAATTAGTTCTGCTACCATACCCTTTGTTCCTAACATGGAATCTTTTCCTTCTCTTGACCCTTTCTCCCCTTCACTTTCATCACTTCCTTTCTTcaacaacaacagcagcaacaacaTGGCATTTGACCCGGGTTTTGACTTGGGCCTGGACACTACTGGGCTTCACTCTTCTGTTCCTCCTGCTCCCCATCTTTTTTCCCAGGCCCAGATGGGCTTTGAGTTCTCGGAACTCGAGGCCCTCACTGGACCTGGGAATGGAAATAATGCCCCTTTTGCGGACGGGGCAAAGGTGGCTGCGGCCATGCTGCTGCGGCCACCTCCTCTCGATGGGGCgcagcagcagcagcagcagcCGACGCTGTACCGGAAGCGGAGGGGGACGGCGGCGGAAATTCCGGGGCTGGAGACGGTgaggaggaaggggaggaagtgggaggaaggaggaagaggaggggagggggaggaagggagcagTGCTGACGTGGATGGTTCCGGGTTGAACTATGAGTCTGATGAGCAGAATGAGAATAATGGGAACAATGGTTTGAAGCTGAGTGAGAATAATGGTGGAGATAACAAGGGGAAGAGGAAGGGGTTACCCGCCAAGAATCTCATGGCGGAGAGGCGCCGCCGGAAGAAACTCAATGATAGGTTGTACATGCTCAGGTCTGTTGTCCCCAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGATGCAATTGACTACTTGAAGGAGTTGCTGCAGCGGATTAATGATCTTCATAACGAGCTAGAGTCAACTCCACCTGGCTCGTTGCTGACACCTTCTTCTACAAGCTTTCAGCCACTAACACCCACCCTGCCAACCCTTCCCTGCCGGGTCAAGGAGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAACCAAGCTGCAAAGGTTGAGGTTAGAGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTCTGCACCCGCCGACCAGGTCTTTTGCTTTCTACCATGAGGGCTTTGGATAACCTCGGATTGGATGTACAGCAGGCTGTTATTAGCTGTTTTAATGGCTTTGCTTTAGATGTGTTCAAAGCCGAGGTATAATTCTCTCTCGTTTGCCAAGCTTCACTTGAACATATCTATTATTAACTTGCTTTACCATTATGATGCTTGTCATTGAACTTTATTTGGTCATTAGCACATTATGCCAAATGGCATTGCTTGTCCCTTGTAGCCAAGTAGTCAACCAAGACTAGTGGGAGA
Coding sequences of Glyma.16g049400
>Glyma.16g049400.1 sequence-type=CDS polypeptide=Glyma.16g049400.1.p locus=Glyma.16g049400 ID=Glyma.16g049400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATATGGAGCGCTACACGCTACCCGCACCACCCATTAATATTATTCTCGAGGAAGAAGAAGAAGAAGAAAACATTGCCATTGCCATGGGTGCCCCTCTTATCCCTTCCTTTAAATCCATGCTTCAACACCAACAACAACAACCTGACTCTTACTTCAACTTCAACTTTAACTCTTCAATTAGTTCTGCTACCATACCCTTTGTTCCTAACATGGAATCTTTTCCTTCTCTTGACCCTTTCTCCCCTTCACTTTCATCACTTCCTTTCTTCAACAACAACAGCAGCAACAACATGGCATTTGACCCGGGTTTTGACTTGGGCCTGGACACTACTGGGCTTCACTCTTCTGTTCCTCCTGCTCCCCATCTTTTTTCCCAGGCCCAGATGGGCTTTGAGTTCTCGGAACTCGAGGCCCTCACTGGACCTGGGAATGGAAATAATGCCCCTTTTGCGGACGGGGCAAAGGTGGCTGCGGCCATGCTGCTGCGGCCACCTCCTCTCGATGGGGCGCAGCAGCAGCAGCAGCAGCCGACGCTGTACCGGAAGCGGAGGGGGACGGCGGCGGAAATTCCGGGGCTGGAGACGGTGAGGAGGAAGGGGAGGAAGTGGGAGGAAGGAGGAAGAGGAGGGGAGGGGGAGGAAGGGAGCAGTGCTGACGTGGATGGTTCCGGGTTGAACTATGAGTCTGATGAGCAGAATGAGAATAATGGGAACAATGGTTTGAAGCTGAGTGAGAATAATGGTGGAGATAACAAGGGGAAGAGGAAGGGGTTACCCGCCAAGAATCTCATGGCGGAGAGGCGCCGCCGGAAGAAACTCAATGATAGGTTGTACATGCTCAGGTCTGTTGTCCCCAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGATGCAATTGACTACTTGAAGGAGTTGCTGCAGCGGATTAATGATCTTCATAACGAGCTAGAGTCAACTCCACCTGGCTCGTTGCTGACACCTTCTTCTACAAGCTTTCAGCCACTAACACCCACCCTGCCAACCCTTCCCTGCCGGGTCAAGGAGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAACCAAGCTGCAAAGGTTGAGGTTAGAGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTCTGCACCCGCCGACCAGGTCTTTTGCTTTCTACCATGAGGGCTTTGGATAACCTCGGATTGGATGTACAGCAGGCTGTTATTAGCTGTTTTAATGGCTTTGCTTTAGATGTGTTCAAAGCCGAGCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAGATTAAAGCGGTGCTCTTGGATTCCGCGGGCTTCCATGGTATGATGTGA

>Glyma.16g049400.2 sequence-type=CDS polypeptide=Glyma.16g049400.2.p locus=Glyma.16g049400 ID=Glyma.16g049400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATATGGAGCGCTACACGCTACCCGCACCACCCATTAATATTATTCTCGAGGAAGAAGAAGAAGAAGAAAACATTGCCATTGCCATGGGTGCCCCTCTTATCCCTTCCTTTAAATCCATGCTTCAACACCAACAACAACAACCTGACTCTTACTTCAACTTCAACTTTAACTCTTCAATTAGTTCTGCTACCATACCCTTTGTTCCTAACATGGAATCTTTTCCTTCTCTTGACCCTTTCTCCCCTTCACTTTCATCACTTCCTTTCTTCAACAACAACAGCAGCAACAACATGGCATTTGACCCGGGTTTTGACTTGGGCCTGGACACTACTGGGCTTCACTCTTCTGTTCCTCCTGCTCCCCATCTTTTTTCCCAGGCCCAGATGGGCTTTGAGTTCTCGGAACTCGAGGCCCTCACTGGACCTGGGAATGGAAATAATGCCCCTTTTGCGGACGGGGCAAAGGTGGCTGCGGCCATGCTGCTGCGGCCACCTCCTCTCGATGGGGCGCAGCAGCAGCAGCAGCAGCCGACGCTGTACCGGAAGCGGAGGGGGACGGCGGCGGAAATTCCGGGGCTGGAGACGGTGAGGAGGAAGGGGAGGAAGTGGGAGGAAGGAGGAAGAGGAGGGGAGGGGGAGGAAGGGAGCAGTGCTGACGTGGATGGTTCCGGGTTGAACTATGAGTCTGATGAGCAGAATGAGAATAATGGGAACAATGGTTTGAAGCTGAGTGAGAATAATGGTGGAGATAACAAGGGGAAGAGGAAGGGGTTACCCGCCAAGAATCTCATGGCGGAGAGGCGCCGCCGGAAGAAACTCAATGATAGGTTGTACATGCTCAGGTCTGTTGTCCCCAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGATGCAATTGACTACTTGAAGGAGTTGCTGCAGCGGATTAATGATCTTCATAACGAGCTAGAGTCAACTCCACCTGGCTCGTTGCTGACACCTTCTTCTACAAGCTTTCAGCCACTAACACCCACCCTGCCAACCCTTCCCTGCCGGGTCAAGGAGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAACCAAGCTGCAAAGGTTGAGGTTAGAGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTCTGCACCCGCCGACCAGGTCTTTTGCTTTCTACCATGAGGGCTTTGGATAACCTCGGATTGGATGTACAGCAGGCTGTTATTAGCTGTTTTAATGGCTTTGCTTTAGATGTGTTCAAAGCCGAGGTATAA
Predicted protein sequences of Glyma.16g049400
>Glyma.16g049400.1.p sequence-type=predicted peptide transcript=Glyma.16g049400.1 locus=Glyma.16g049400 ID=Glyma.16g049400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNMERYTLPAPPINIILEEEEEEENIAIAMGAPLIPSFKSMLQHQQQQPDSYFNFNFNSSISSATIPFVPNMESFPSLDPFSPSLSSLPFFNNNSSNNMAFDPGFDLGLDTTGLHSSVPPAPHLFSQAQMGFEFSELEALTGPGNGNNAPFADGAKVAAAMLLRPPPLDGAQQQQQQPTLYRKRRGTAAEIPGLETVRRKGRKWEEGGRGGEGEEGSSADVDGSGLNYESDEQNENNGNNGLKLSENNGGDNKGKRKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSLLTPSSTSFQPLTPTLPTLPCRVKEELYPGTLPSPKNQAAKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFKAEQCREGQDVLPEQIKAVLLDSAGFHGMM*

>Glyma.16g049400.2.p sequence-type=predicted peptide transcript=Glyma.16g049400.2 locus=Glyma.16g049400 ID=Glyma.16g049400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNMERYTLPAPPINIILEEEEEEENIAIAMGAPLIPSFKSMLQHQQQQPDSYFNFNFNSSISSATIPFVPNMESFPSLDPFSPSLSSLPFFNNNSSNNMAFDPGFDLGLDTTGLHSSVPPAPHLFSQAQMGFEFSELEALTGPGNGNNAPFADGAKVAAAMLLRPPPLDGAQQQQQQPTLYRKRRGTAAEIPGLETVRRKGRKWEEGGRGGEGEEGSSADVDGSGLNYESDEQNENNGNNGLKLSENNGGDNKGKRKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSLLTPSSTSFQPLTPTLPTLPCRVKEELYPGTLPSPKNQAAKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFKAEV*






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