SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.16g044100

Feature Type:gene_model
Chromosome:Gm16
Start:4135885
stop:4137742
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.16g044100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G65480.1AT PEBP (phosphatidylethanolamine-binding protein) family protein JGI N/AIEA
KOG3346 KOG Phosphatidylethanolamine binding protein JGI N/AIEA
PTHR11362Panther PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN JGI N/AIEA
PF01161PFAM Phosphatidylethanolamine-binding protein JGI N/AIEA

Proteins Associated with Glyma.16g044100
LocusGene SymbolProtein Name
FT5a Flowering locus T gene 5a
FTL4 Flowering locus T-like gene 4
FT5A FLOWERING LOCUS T-like protein
FT5a Flowering Locus T gene 5a

Expression Patterns of Glyma.16g044100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.16g044100
ParalogEvidenceComments
Glyma.19g108200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.16g044100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma16g04830 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.16g044100
>Glyma.16g044100.1 sequence-type=CDS polypeptide=Glyma.16g044100.1.p locus=Glyma.16g044100 ID=Glyma.16g044100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCACGGGAGAACCCTCTTGTTATTGGTGGTGTGATTGGGGATGTTCTCAACCCTTTTACAAGCTCCGTTTCTTTGACTGTTTCAATCAATAATAGGGCGATTAGCAATGGCTTGGAACTCAGGCCCTCTCAAGTTGTTAATCGCCCTAGGGTTACTGTTGGTGGTGAAGACCTAAGGACCTTCTACACTCTGGTTATGGTGGATGCAGATGCACCTAGCCCTAGCAACCCTGTCTTGAGGGAATACCTTCACTGGATGGTGACAGATATTCCAGCTACCACAAATGCAAGCTTTGGGAGAGAGGTTGTGTTTTATGAGAGCCCGAACCCTTCAGTAGGGATTCATCGAATCGTGTTCGTATTGTTCCAGCAATTGGGCAGAGACACTGTCATCACCCCAGAATGGCGCCATAATTTCAATTCCAGAAACTTTGCTGAAATTAATAACCTTGCACCTGTTGCAGCAGCTTATGCCAACTGCCAAAGAGAGCGTGGTTGCGGTGGAAGGAGATATTAA
Predicted protein sequences of Glyma.16g044100
>Glyma.16g044100.1.p sequence-type=predicted peptide transcript=Glyma.16g044100.1 locus=Glyma.16g044100 ID=Glyma.16g044100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MARENPLVIGGVIGDVLNPFTSSVSLTVSINNRAISNGLELRPSQVVNRPRVTVGGEDLRTFYTLVMVDADAPSPSNPVLREYLHWMVTDIPATTNASFGREVVFYESPNPSVGIHRIVFVLFQQLGRDTVITPEWRHNFNSRNFAEINNLAPVAAAYANCQRERGCGGRRY*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo