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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G03890.1 | AT | FMN binding | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0004733 | GO-mf | pyridoxamine-phosphate oxidase activity | JGI | N/A | IEA |
| GO:0010181 | GO-mf | FMN binding | JGI | N/A | IEA |
| GO:0048037 | GO-mf | cofactor binding | EnsemblGenomes | N/A | IEA |
| KOG3374 | KOG | Cellular repressor of transcription | JGI | N/A | IEA |
| PTHR13343 | Panther | CREG1 PROTEIN | JGI | N/A | IEA |
| PTHR13343:SF4 | Panther | SUBFAMILY NOT NAMED | JGI | N/A | IEA |
| PF01243 | PFAM | Pyridoxamine 5'-phosphate oxidase | JGI | N/A | IEA |
| PF10615 | PFAM | Protein of unknown function (DUF2470) | JGI | N/A | IEA |
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Glyma.16g040700 not represented in the dataset |
Glyma.16g040700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.19g112500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma16g04520 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.16g040700.1 sequence-type=CDS polypeptide=Glyma.16g040700.1.p locus=Glyma.16g040700 ID=Glyma.16g040700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTGACGCCATTGACGAGGGTCTTACCCTTTCGTCACCCAAATGGCTATAATACCCTTCCCTTCTCTCTTACACGCTACCCTTCCTCACCGAACTTCTCCTTCTCCTTCTCCCCTCTCACTCTCACTCTTTCCATGGCCGCTTCACCACAATCCTCCGCTCCGACTGTGTCGCCTGGTGATGCTAACATCAACAAAGATGGTGTATTTCAATTGATTCAAGCACATCAGGAAAAAGCTGCTAGACTTCCACCAGTTGAGGAAATTCGAACTGTCCTTGATCGTAGCGTGCGTGGGATGCTCTCTACATTCTCGAAGAAGTTCGATGGTTATCCATCAGGGTCTATGGTTGACTTTGCTTGTGATTCAAATGGATATCCTATATTAGCAGTGAGCGACTTGGCAGTTCATTCGAAGGACCTAACTGCCAATCCTAAATGTTCATTGCTTGTGGCTAGAGATCCTGAAGATAGGACTGATTTAGTGATTACTGTACATGGTGATGCTATCTCTGTACCTGAAAATGAAAGAGAAGCCGTTCGAGCTGCATATTTGGCGAGGCATCCCAATGCATTTTGGGTTGACTTTGGAGACTTCCGATTCTTGCGCATTGAACCAAAAGTTGTACGATTTGTGTCAGGTGTTGCCACGGCTTTGTTAGGATCAGGAGAGTTTAGTGGAGATGAGTATAAATCTGCAAAAGTTGACCCCATAGCTCAGTTTTCCAAGCCAGTGGCGTCTCATATGAACAAAGATCATGCTGAAGATAACAAAGTGATTGTGCAGCATTGGACCTCAGTTCCAGTATTGGACTTTGCCGACATACTAGATTTGGATAGTCTTGGTTTCAATGTTAAGGCTGGTTACCAGGGTGATACTTTCAAGCTTCGTGTACCTTTCCCTCGACGTGCTGAAGATAGAAAGGATGTGAAGACTCTCATTGTTGAGATGCTTCAAGCTGCTAGGCCTAAAGTTGATTGA
>Glyma.16g040700.1.p sequence-type=predicted peptide transcript=Glyma.16g040700.1 locus=Glyma.16g040700 ID=Glyma.16g040700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVTPLTRVLPFRHPNGYNTLPFSLTRYPSSPNFSFSFSPLTLTLSMAASPQSSAPTVSPGDANINKDGVFQLIQAHQEKAARLPPVEEIRTVLDRSVRGMLSTFSKKFDGYPSGSMVDFACDSNGYPILAVSDLAVHSKDLTANPKCSLLVARDPEDRTDLVITVHGDAISVPENEREAVRAAYLARHPNAFWVDFGDFRFLRIEPKVVRFVSGVATALLGSGEFSGDEYKSAKVDPIAQFSKPVASHMNKDHAEDNKVIVQHWTSVPVLDFADILDLDSLGFNVKAGYQGDTFKLRVPFPRRAEDRKDVKTLIVEMLQAARPKVD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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