Glyma.16g036400

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Report for Sequence Feature Glyma.16g036400

Feature Type:	gene_model
Chromosome:	Gm16
Start:	3459878
stop:	3464461
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.16g036400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G03740.1	AT	BTB-POZ and MATH domain 4	JGI	N/A	IEA
GO:0005515	GO-mf	protein binding	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
KOG1987	KOG	Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains	JGI	N/A	IEA
PTHR24411	Panther	FAMILY NOT NAMED	JGI	N/A	IEA
PTHR24411:SF177	Panther		JGI	N/A	IEA
PF00651	PFAM	BTB/POZ domain	JGI	N/A	IEA
PF00917	PFAM	MATH domain	JGI	N/A	IEA

Expression Patterns of Glyma.16g036400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.16g036400 not represented in the dataset	Glyma.16g036400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.16g036400

Paralog	Evidence	Comments
Glyma.19g116300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.16g036400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma16g04060	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.16g036400

Limit To All Plant Sequences

>Glyma.16g036400.2 sequence-type=transcript locus=Glyma.16g036400 ID=Glyma.16g036400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTCTCTTCACTTTCCCgaaaaagaagaaaaaaaaagcaaagaaaaTCCTGTTTCCCGATAAAAACCCCGTCCGTACATGGTCTGGTCACGCGGATCGGGTTGATTGAGATGCACACCGCGAGCAGGAGCAAcggcggcggcggcggcgtgctggcgtcgcggACGAGTTCGCGGTCGGTGACGGAGACGGTGAACGGGTCGCACAAGTTCGTGATAAAGGGATACTCGCTGGCGAAGGGGATCGGAGTCGGAAAACACATCGCGAGCGAGACGTTCACGGTAGGAGGGTACCAGTGGGCGATATACTTCTACCCTGACGGCAAGAACCCAGAGGACAACTCCGCCTACGTCTCCGTCTTCATCGCGCTCGCCTCCGAGGGCACCGACGTCCGCGCCCTGTTTGAGCTCACGCTGCTCGACCAGAGCGGGAATGGGAAGCACAAGGTGCATAGCCACTTCGATCGCTCGCTCGAGAGCGGCCCCTACACTCTCAAATACCGCGGCAGCATGTGGGGGTATAAGAGATTTTTCAAACGGGCTCAACTCGAGGCGTCAACTTTCCTCAAGGATGACTGCTTGAAGATAAACTGCACTGTTGGTGTTGTGGTGTCTTCCATTGATTGTTCCAAGTTAAACACAATACAGGTTCCCGAATCCGATATTGGGGCACATTTCGGGATGCTGTTAGAGAATGAGGAGGGATCAGATGTTACTTTCTCTGTCGGTGGAGAAAGGTTTCATGCACATAAGCTTGTTTTGGCTGCTCGATCAACTGCATTTGAAACCGAGTTTTTTAATGGGATGGAGGAGGATGATCATGATGTAGTTGTTACTGACATGGAACCAAAAGTTTTCAAGGCTTTGCTTCATTTTATTTATAGAGACACTCTAATAGATGATGAAGAGCTCTTTATGTCACGTTCATCATTCTTGCCTTCGGTATCTGAATCATTTGCTGCAAAGTTGTTAGCTGCTGCAGAAAAGTATGGTTTGCCAAGACTTAAACTGATGTGCGAGTCTGTACTTTGCAAAGACATCTCCATAGATTCTGTTGCCTATATTCTGGCTCTTGCTGATCGTTATCGTGCTACAGAATTGAAGTCTGTCTGTCTACAATTTTCTGCTGAAAACCTTGTCGCTGTGATGCAATCTGATGGTTTTGAGTATCTTAAGGAAAATTGTCCCTTGCTGCAATCAGAACTGCTAAAGACTGTGGCAGGATGCGAGGAGGAATTTAGTGGAGAAGGAAAGTGTCGAAGTGTGTGGGCCCAATTTTCTGATGGTGGTGACACCAATGATAGGAGTGTAAGACAACAAACCTGGGAAAATGGTGTTGAAAGAAGTCAAAGCTTATGGGTTCACCTTTCTGATGGTGTTAACAACAATGATAGGAGTCCAGGGCAAGAAACCTGACAAGGGATTCTGCTGGGACAAGTTAAACGTGTCATTGGTACAAGACCAACCTGCAGGGATTAATCCATTGCATGCAGTGTTGTTTTTCTTTTCTTTTAACGGGGGATAGTGGTTAACTGGTTGAGAATAGTATATTCATCTTGTAACGTTAGTGATGTATCTATTAACATCAATGAATGCTAGCAAGTTAACAAATGAGATGAAGTGCAAAACAAGTTCTAGTTTGCCTTTGGTTGTGTATCTTTTTCTCTTCATGTATGATTGCTGTAGCTTTACACCGTGGGAATCTTCATCCTTCTGAATCGTGAAACCTATGGATCAAATTAGACTAGTATAGCCGTTATACCATCAATAATT

>Glyma.16g036400.3 sequence-type=transcript locus=Glyma.16g036400 ID=Glyma.16g036400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTCTCTTCACTTTCCCgaaaaagaagaaaaaaaaagcaaagaaaaTCCTGTTTCCCGATAAAAACCCCGTCCGTACATGGTCTGGTCACGCGGATCGGGTTGATTGAGATGCACACCGCGAGCAGGAGCAAcggcggcggcggcggcgtgctggcgtcgcggACGAGTTCGCGGTCGGTGACGGAGACGGTGAACGGGTCGCACAAGTTCGTGATAAAGGGATACTCGCTGGCGAAGGGGATCGGAGTCGGAAAACACATCGCGAGCGAGACGTTCACGGTAGGAGGGTACCAGTGGGCGATATACTTCTACCCTGACGGCAAGAACCCAGAGGACAACTCCGCCTACGTCTCCGTCTTCATCGCGCTCGCCTCCGAGGGCACCGACGTCCGCGCCCTGTTTGAGCTCACGCTGCTCGACCAGAGCGGGAATGGGAAGCACAAGGTGCATAGCCACTTCGATCGCTCGCTCGAGAGCGGCCCCTACACTCTCAAATACCGCGGCAGCATGTGGGGGTATAAGAGATTTTTCAAACGGGCTCAACTCGAGGCGTCAACTTTCCTCAAGGATGACTGCTTGAAGATAAACTGCACTGTTGGTGTTGTGGTGTCTTCCATTGATTGTTCCAAGTTAAACACAATACAGGTTCCCGAATCCGATATTGGGGCACATTTCGGGATGCTGTTAGAGAATGAGGAGGGATCAGATGTTACTTTCTCTGTCGGTGGAGAAAGGTTTCATGCACATAAGCTTGTTTTGGCTGCTCGATCAACTGCATTTGAAACCGAGTTTTTTAATGGGATGGAGGAGGATGATCATGATGTAGTTGTTACTGACATGGAACCAAAAGTTTTCAAGGCTTTGCTTCATTTTATTTATAGAGACACTCTAATAGATGATGAAGAGCTCTTTATGTCACGTTCATCATTCTTGCCTTCGGTATCTGAATCATTTGCTGCAAAGTTGTTAGCTGCTGCAGAAAAGTATGGTTTGCCAAGACTTAAACTGATGTGCGAGTCTGTACTTTGCAAAGACATCTCCATAGATTCTGTTGCCTATATTCTGGCTCTTGCTGATCGTTATCGTGCTACAGAATTGAAGTCTGTCTGTCTACAATTTTCTGCTGAAAACCTTGTCGGTGAGTTTTTCTGTTCAACTCTCCCACCCAAGTCTACACTCAAATTCATAGTCAGGCACTTTTTAGCTTGTAATATATTCTCATCATTTTGATGACTGCATTACTTGTTATTTGGCAAAACCACTGGATCATACATGCTATACATGAACAAACTCATTTGTTCTGTTGTTGCTGGAAATTCTTACGGCTGGCAGACTTGGTGGTATGGAAATAAGCTTTAATTCTCAGTATTATGAACATGTGAAGCAGTACCCTTTATTTTTAATCTTGATTAAGTCTCTTCCATAAATAAGGATTGTACCCATTGTCTACACGAAAATAAAGACTATCTATCTTCCAAAAATGTAAATGCTTTTACTTTATAGTGTAAAAAAGGAACAACAAAAAAGAAACACACCCTCATCTTTTCCACCTATCCTACATCTTATGTTATCTATTTTACTAATATTTGATAGACAACTGTGATTGAAGTTTTTTTCTTTTTGTTTCTTGCTCTTTTTCTTGTGATGATTGAGGAAGTACCCTTTTTCTGGAAAAG

Coding sequences of Glyma.16g036400

Limit To All Plant Sequences

>Glyma.16g036400.1 sequence-type=CDS polypeptide=Glyma.16g036400.1.p locus=Glyma.16g036400 ID=Glyma.16g036400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCACACCGCGAGCAGGAGCAACGGCGGCGGCGGCGGCGTGCTGGCGTCGCGGACGAGTTCGCGGTCGGTGACGGAGACGGTGAACGGGTCGCACAAGTTCGTGATAAAGGGATACTCGCTGGCGAAGGGGATCGGAGTCGGAAAACACATCGCGAGCGAGACGTTCACGGTAGGAGGGTACCAGTGGGCGATATACTTCTACCCTGACGGCAAGAACCCAGAGGACAACTCCGCCTACGTCTCCGTCTTCATCGCGCTCGCCTCCGAGGGCACCGACGTCCGCGCCCTGTTTGAGCTCACGCTGCTCGACCAGAGCGGGAATGGGAAGCACAAGGTGCATAGCCACTTCGATCGCTCGCTCGAGAGCGGCCCCTACACTCTCAAATACCGCGGCAGCATGTGGGGGTATAAGAGATTTTTCAAACGGGCTCAACTCGAGGCGTCAACTTTCCTCAAGGATGACTGCTTGAAGATAAACTGCACTGTTGGTGTTGTGGTGTCTTCCATTGATTGTTCCAAGTTAAACACAATACAGGTTCCCGAATCCGATATTGGGGCACATTTCGGGATGCTGTTAGAGAATGAGGAGGGATCAGATGTTACTTTCTCTGTCGGTGGAGAAAGGTTTCATGCACATAAGCTTGTTTTGGCTGCTCGATCAACTGCATTTGAAACCGAGTTTTTTAATGGGATGGAGGAGGATGATCATGATGTAGTTGTTACTGACATGGAACCAAAAGTTTTCAAGGCTTTGCTTCATTTTATTTATAGAGACACTCTAATAGATGATGAAGAGCTCTTTATGTCACGTTCATCATTCTTGCCTTCGGTATCTGAATCATTTGCTGCAAAGTTGTTAGCTGCTGCAGAAAAGTATGGTTTGCCAAGACTTAAACTGATGTGCGAGTCTGTACTTTGCAAAGACATCTCCATAGATTCTGTTGCCTATATTCTGGCTCTTGCTGATCGTTATCGTGCTACAGAATTGAAGTCTGTCTGTCTACAATTTTCTGCTGAAAACCTTGTCGCTGTGATGCAATCTGATGGTTTTGAGTATCTTAAGGAAAATTGTCCCTTGCTGCAATCAGAACTGCTAAAGACTGTGGCAGGATGCGAGGAGGAATTTAGTGGAGAAGGAAAGTGTCGAAGTGTGTGGGCCCAATTTTCTGATGGTGGTGACACCAATGATAGGAGTGTAAGACAACAAACCTGGGAAAATGGTGTTGAAAGAAGTCAAAGCTTATGGGTTCACCTTTCTGATGGTGTTAACAACAATGATAGGAGTCCAGGGCAAGAAACCTGA

>Glyma.16g036400.2 sequence-type=CDS polypeptide=Glyma.16g036400.2.p locus=Glyma.16g036400 ID=Glyma.16g036400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCACACCGCGAGCAGGAGCAACGGCGGCGGCGGCGGCGTGCTGGCGTCGCGGACGAGTTCGCGGTCGGTGACGGAGACGGTGAACGGGTCGCACAAGTTCGTGATAAAGGGATACTCGCTGGCGAAGGGGATCGGAGTCGGAAAACACATCGCGAGCGAGACGTTCACGGTAGGAGGGTACCAGTGGGCGATATACTTCTACCCTGACGGCAAGAACCCAGAGGACAACTCCGCCTACGTCTCCGTCTTCATCGCGCTCGCCTCCGAGGGCACCGACGTCCGCGCCCTGTTTGAGCTCACGCTGCTCGACCAGAGCGGGAATGGGAAGCACAAGGTGCATAGCCACTTCGATCGCTCGCTCGAGAGCGGCCCCTACACTCTCAAATACCGCGGCAGCATGTGGGGGTATAAGAGATTTTTCAAACGGGCTCAACTCGAGGCGTCAACTTTCCTCAAGGATGACTGCTTGAAGATAAACTGCACTGTTGGTGTTGTGGTGTCTTCCATTGATTGTTCCAAGTTAAACACAATACAGGTTCCCGAATCCGATATTGGGGCACATTTCGGGATGCTGTTAGAGAATGAGGAGGGATCAGATGTTACTTTCTCTGTCGGTGGAGAAAGGTTTCATGCACATAAGCTTGTTTTGGCTGCTCGATCAACTGCATTTGAAACCGAGTTTTTTAATGGGATGGAGGAGGATGATCATGATGTAGTTGTTACTGACATGGAACCAAAAGTTTTCAAGGCTTTGCTTCATTTTATTTATAGAGACACTCTAATAGATGATGAAGAGCTCTTTATGTCACGTTCATCATTCTTGCCTTCGGTATCTGAATCATTTGCTGCAAAGTTGTTAGCTGCTGCAGAAAAGTATGGTTTGCCAAGACTTAAACTGATGTGCGAGTCTGTACTTTGCAAAGACATCTCCATAGATTCTGTTGCCTATATTCTGGCTCTTGCTGATCGTTATCGTGCTACAGAATTGAAGTCTGTCTGTCTACAATTTTCTGCTGAAAACCTTGTCGCTGTGATGCAATCTGATGGTTTTGAGTATCTTAAGGAAAATTGTCCCTTGCTGCAATCAGAACTGCTAAAGACTGTGGCAGGATGCGAGGAGGAATTTAGTGGAGAAGGAAAGTGTCGAAGTGTGTGGGCCCAATTTTCTGATGGTGGTGACACCAATGATAGGAGTGTAAGACAACAAACCTGGGAAAATGGTGTTGAAAGAAGTCAAAGCTTATGGGTTCACCTTTCTGATGGTGTTAACAACAATGATAGGAGTCCAGGGCAAGAAACCTGA

>Glyma.16g036400.3 sequence-type=CDS polypeptide=Glyma.16g036400.3.p locus=Glyma.16g036400 ID=Glyma.16g036400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCACACCGCGAGCAGGAGCAACGGCGGCGGCGGCGGCGTGCTGGCGTCGCGGACGAGTTCGCGGTCGGTGACGGAGACGGTGAACGGGTCGCACAAGTTCGTGATAAAGGGATACTCGCTGGCGAAGGGGATCGGAGTCGGAAAACACATCGCGAGCGAGACGTTCACGGTAGGAGGGTACCAGTGGGCGATATACTTCTACCCTGACGGCAAGAACCCAGAGGACAACTCCGCCTACGTCTCCGTCTTCATCGCGCTCGCCTCCGAGGGCACCGACGTCCGCGCCCTGTTTGAGCTCACGCTGCTCGACCAGAGCGGGAATGGGAAGCACAAGGTGCATAGCCACTTCGATCGCTCGCTCGAGAGCGGCCCCTACACTCTCAAATACCGCGGCAGCATGTGGGGGTATAAGAGATTTTTCAAACGGGCTCAACTCGAGGCGTCAACTTTCCTCAAGGATGACTGCTTGAAGATAAACTGCACTGTTGGTGTTGTGGTGTCTTCCATTGATTGTTCCAAGTTAAACACAATACAGGTTCCCGAATCCGATATTGGGGCACATTTCGGGATGCTGTTAGAGAATGAGGAGGGATCAGATGTTACTTTCTCTGTCGGTGGAGAAAGGTTTCATGCACATAAGCTTGTTTTGGCTGCTCGATCAACTGCATTTGAAACCGAGTTTTTTAATGGGATGGAGGAGGATGATCATGATGTAGTTGTTACTGACATGGAACCAAAAGTTTTCAAGGCTTTGCTTCATTTTATTTATAGAGACACTCTAATAGATGATGAAGAGCTCTTTATGTCACGTTCATCATTCTTGCCTTCGGTATCTGAATCATTTGCTGCAAAGTTGTTAGCTGCTGCAGAAAAGTATGGTTTGCCAAGACTTAAACTGATGTGCGAGTCTGTACTTTGCAAAGACATCTCCATAGATTCTGTTGCCTATATTCTGGCTCTTGCTGATCGTTATCGTGCTACAGAATTGAAGTCTGTCTGTCTACAATTTTCTGCTGAAAACCTTGTCGGTGAGTTTTTCTGTTCAACTCTCCCACCCAAGTCTACACTCAAATTCATAGTCAGGCACTTTTTAGCTTGTAATATATTCTCATCATTTTGA

Predicted protein sequences of Glyma.16g036400

Limit To All Plant Sequences

>Glyma.16g036400.1.p sequence-type=predicted peptide transcript=Glyma.16g036400.1 locus=Glyma.16g036400 ID=Glyma.16g036400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MHTASRSNGGGGGVLASRTSSRSVTETVNGSHKFVIKGYSLAKGIGVGKHIASETFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLLDQSGNGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEASTFLKDDCLKINCTVGVVVSSIDCSKLNTIQVPESDIGAHFGMLLENEEGSDVTFSVGGERFHAHKLVLAARSTAFETEFFNGMEEDDHDVVVTDMEPKVFKALLHFIYRDTLIDDEELFMSRSSFLPSVSESFAAKLLAAAEKYGLPRLKLMCESVLCKDISIDSVAYILALADRYRATELKSVCLQFSAENLVAVMQSDGFEYLKENCPLLQSELLKTVAGCEEEFSGEGKCRSVWAQFSDGGDTNDRSVRQQTWENGVERSQSLWVHLSDGVNNNDRSPGQET*

>Glyma.16g036400.2.p sequence-type=predicted peptide transcript=Glyma.16g036400.2 locus=Glyma.16g036400 ID=Glyma.16g036400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MHTASRSNGGGGGVLASRTSSRSVTETVNGSHKFVIKGYSLAKGIGVGKHIASETFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLLDQSGNGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEASTFLKDDCLKINCTVGVVVSSIDCSKLNTIQVPESDIGAHFGMLLENEEGSDVTFSVGGERFHAHKLVLAARSTAFETEFFNGMEEDDHDVVVTDMEPKVFKALLHFIYRDTLIDDEELFMSRSSFLPSVSESFAAKLLAAAEKYGLPRLKLMCESVLCKDISIDSVAYILALADRYRATELKSVCLQFSAENLVAVMQSDGFEYLKENCPLLQSELLKTVAGCEEEFSGEGKCRSVWAQFSDGGDTNDRSVRQQTWENGVERSQSLWVHLSDGVNNNDRSPGQET*

>Glyma.16g036400.3.p sequence-type=predicted peptide transcript=Glyma.16g036400.3 locus=Glyma.16g036400 ID=Glyma.16g036400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MHTASRSNGGGGGVLASRTSSRSVTETVNGSHKFVIKGYSLAKGIGVGKHIASETFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLLDQSGNGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEASTFLKDDCLKINCTVGVVVSSIDCSKLNTIQVPESDIGAHFGMLLENEEGSDVTFSVGGERFHAHKLVLAARSTAFETEFFNGMEEDDHDVVVTDMEPKVFKALLHFIYRDTLIDDEELFMSRSSFLPSVSESFAAKLLAAAEKYGLPRLKLMCESVLCKDISIDSVAYILALADRYRATELKSVCLQFSAENLVGEFFCSTLPPKSTLKFIVRHFLACNIFSSF*

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