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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G03710.1 | AT | polyribonucleotide nucleotidyltransferase, putative | JGI | N/A | IEA |
| GO:0006298 | GO-bp | mismatch repair | EnsemblGenomes | N/A | IEA |
| GO:0006301 | GO-bp | postreplication repair | EnsemblGenomes | N/A | IEA |
| GO:0006311 | GO-bp | meiotic gene conversion | EnsemblGenomes | N/A | IEA |
| GO:0006355 | GO-bp | regulation of transcription, DNA-templated | EnsemblGenomes | N/A | IEA |
| GO:0006396 | GO-bp | RNA processing | EnsemblGenomes | N/A | IEA |
| GO:0006402 | GO-bp | mRNA catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0043570 | GO-bp | maintenance of DNA repeat elements | EnsemblGenomes | N/A | IEA |
| GO:0045128 | GO-bp | negative regulation of reciprocal meiotic recombination | EnsemblGenomes | N/A | IEA |
| GO:0032301 | GO-cc | MutSalpha complex | EnsemblGenomes | N/A | IEA |
| GO:0032302 | GO-cc | MutSbeta complex | EnsemblGenomes | N/A | IEA |
| GO:0000400 | GO-mf | four-way junction DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0000403 | GO-mf | Y-form DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0000404 | GO-mf | heteroduplex DNA loop binding | EnsemblGenomes | N/A | IEA |
| GO:0000406 | GO-mf | double-strand/single-strand DNA junction binding | EnsemblGenomes | N/A | IEA |
| GO:0003676 | GO-mf | nucleic acid binding | EnsemblGenomes | N/A | IEA |
| GO:0003684 | GO-mf | damaged DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003723 | GO-mf | RNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003723 | GO-mf | RNA binding | JGI | N/A | IEA |
| GO:0004654 | GO-mf | polyribonucleotide nucleotidyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0008094 | GO-mf | DNA-dependent ATPase activity | EnsemblGenomes | N/A | IEA |
| GO:0032137 | GO-mf | guanine/thymine mispair binding | EnsemblGenomes | N/A | IEA |
| GO:0032138 | GO-mf | single base insertion or deletion binding | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| KOG1067 | KOG | Predicted RNA-binding polyribonucleotide nucleotidyltransferase | JGI | N/A | IEA |
| PTHR11252 | Panther | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE | JGI | N/A | IEA |
| PF00013 | PFAM | KH domain | JGI | N/A | IEA |
| PF01138 | PFAM | 3' exoribonuclease family, domain 1 | JGI | N/A | IEA |
| PF03725 | PFAM | 3' exoribonuclease family, domain 2 | JGI | N/A | IEA |
|
Glyma.16g036100 not represented in the dataset |
Glyma.16g036100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.19g116700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma16g04030 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.16g036100.1 sequence-type=CDS polypeptide=Glyma.16g036100.1.p locus=Glyma.16g036100 ID=Glyma.16g036100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGATACTAAAGCAGAATGGGCTTAGCACTTTCTCCTTCTCTCCATTGTCCTCTGTGTCCCACTCTCTTCCTCACACTCACCACTCCCTGAAACTGAGAAGCAACAACTTCAACTCGCTCCACAAATTACAGCGAGAGAAGAAGAAGAAGAAGAAGATGCTAGCATGTCCTAGCAGCTCCCTCCATGGCCTCGCCACGCTCCAACGCCATTCCCAACCATCTCACTTCCTCCTCTCCAAGCCTCTCTTCTTCCCTCGCTTCCACGCTTCCCGCAAATGCAACTTCCGCTCTCTCCTTTCCGGCAACAACCGTCGCCGCTCCGCCGTCAGAGCCTCCGCGGACTCGCCGGAGGTGTCGGAGTCCGTCGTCGGTGCCGACGGTGGAGGCTTGCAACCGTATTCCGTGAAGATTCCCGTTGGTGATAGACATATTTTGGTTGAAACCGGTTCTATAGGAAGACAAGCAAGTGGCTCTGTTACAGTTACAGATGGAGAAACTATTGTGTACACAACTGTTTGCTTGGATGATGTTCCTTGTGAACCATCTGACTTTTTCCCTCTTTCTGTTATTTATCAAGAGCGTTTTTCAGCAGCTGGTCGCACTAGTGGAGGTTTTTTTAAGCGAGAAGGAAAGATAAAAGATCATGAGGTTCTTATTTGTAGATTGATTGATAGGCCTCTACGTCCTACAATGCCAAAGGGTTTCTATCATGAAACTCAAATATTATCTTGGGTTTTGAGCTATGATGGATTGCACTCCCCTGATTCTTTGGCTATCACTGCAGCTGGTATAGCAGTTGCACTTTCAGAAGTACCAATGTCAAAAGCAGTTGCTGGAGTTCGTGTTGGTCTTGTTGGTGATAAGTATATAGTAAATCCTACGACTGAGGAGATGGAACACTCTGAGTTGGACCTCTTGCTGGCTGGCACAGATAGTGCAATATTGATGATAGAGGGCTATAGCAGTTTTCTCCCAGAAGAGAAGTTACTTAAAGCTGTAGAAGTTGGTCAGGATGCAGTGCGAGCAATCTGTAATGAGGTAGAAGCCTTGGTTAAGAAGTGTGGGAAGCCAAAGATGTTGGATGCCATTAAGTTGCCTCCTCCCGAACTTTATGAACATGTTGAAGCAATTGCTGGTGATGAGTTAGTAAAAGTTCTTCAAATTAGAAACAAAATACCCAGAAGGAAAGCCCTTTCATCATTAGAAGAAAAGGTTCTGAAGATACTCACAGAAAATGGGTTTGTCTCAAATGATTCAACACTGAGGAGTAATTCTGAGACCATTGCGGAGATTCTTGAGGTTGAGGATGAAGACGAGGAAGTAATTGTTGATGGTGAAGTTGACGAAGGTGATGTTCATATAAAGCCAACTCCACGTAAACCAGCCCTTTTATTTTCTGAGGTGGATGTGAAGTTGGTATTTAAGGAAATTACTTCGAAATATTGGAGGAAGCGCATAGTAGAGGGGGGGAAAAGGAGTGATGGGCGAACACCTGACGGAATACGTCCAATTAACTCGAGATGTGGCCTATTACCTAGAGCACATGGAAGTACTCTTTTTACAAGAGGCGAGACACAGGCACTAGCAGTTGTTACACTTGGAGATAAACAAATGGCGCAAAGAATTGACACCCTTGATGGTGTTGATGAATTCAAGAGGTTCTATCTGCAGTATTCATTTCCTCCTTCATGTGTTGGGGAAGCTGGCCGGATTGGTGCCCCAAGTAGAAGAGAAATTGGTCATGGGATGCTTGCTGAGAGATCCCTTGCACCAATTTTGCCTTCTGAAGATGATTTCCCTTACACTATACGTGTTGAGAGTACTATCACTGAAAGCAATGGCTCTTCAAGCATGGCTTCTGTTTGTGGAGGTTGCTTAGCATTGCAAGATGCTGGGGTTCCTATTAAGTGTTCTATTGCTGGAATTGCAATGGGTATGGTACTGGACACCAAGGAATTTGGTGGAGATGGAACTCCACTTATTCTGTCTGACATAACTGGATCTGAAGATGCGTCTGGAGATATGGATTTCAAGGTTGCTGGAAATGGAGATGGCATAACTGCATTTCAAATGGACATTAAGGTGGGTGGAATTACTTTGCCCATCATGAGAAAGGCACTTCTACAAGCAAGAGATGGCAGGAAGCATATACTTGGAGCAATGATGAATTCCTCACCTCCTCCAGCAAAAATGCTTTCCAAGTATGCTCCTCTGATTCATGTTATGAAGGTAAGACCGGATAGAATAAATCTTATAATTGGTTCTGGTGGGAAAAAAGTGAAGAGCATTATTGAGGAATCTGGAGTAGACACTATTGATACAGAAGATGATGGCACTGTGAAAATATTTGCAAAAGATTTACCTAGTTTAGAGAAGTCTAAAGCTATTATTAATAGTTTGACGATGGTTCCAACTATTGGTGATATATATAGTCCCTTTGTTAGGCTTCTATTTGTTTTGTCTGTTAAGTGGGAAGATGGCTGGAAAGAAGATGGGGTCCCATTGCTGGAAAAATATCCTAGACTGTACTGTATCTCAAAGCAGCAACAGCATTATATTCAGCAGATGGGATTGGTGTCAAGTGGGGTGTGGGAATGGCAGCTCAAGTGGAGGAGACTGCTAATGGAGGGAGAGATGGATGTGGCAGCACATTTCCTGGAGGATATTGACGGGATGGCAGTTCAGGTCCAACATCAAGATAGCGGGTCATGGGAGGGAGATCCGGGAGGGGAGTACTCAGTGGGAAGTGCATATCGGGCACTTAATGAATATGCAATTGAAGAAGATGATGAGAGGGCATTTTCTATCCTTTGGAAACTAAAAATTCCCAGCAAGGTGTCTCTTTTTGCTTGGAGATTGATCCGGGATAGATTGCCAACAAGGAAGAATCTTAGAAACCGAAACGTAGTTTTGGATGAAGTCTGCTGCCCGTTTTGCCTAAACCACAACGAGGATGCAGGGCATTTGTTTTTTGGATGCACCAAAATCATGCCATTGTGGTGGGAGACCCTGTCATGGATAAATACGCTCTCTGTATTTTCAGAAAGGCCAAAAGAACATTTTCTCCAACATTCTCAATGCTTTCTGAATGGTTTTTCTGAACATAGATGGCAGATTTGGTGGATCTCTCTGGCTTGGTGCACTTGGAATCATAGGAACAGGATTTTTTTTCAGGTGACAGCTTTGATGGTCAAAAACTGA
>Glyma.16g036100.1.p sequence-type=predicted peptide transcript=Glyma.16g036100.1 locus=Glyma.16g036100 ID=Glyma.16g036100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MILKQNGLSTFSFSPLSSVSHSLPHTHHSLKLRSNNFNSLHKLQREKKKKKKMLACPSSSLHGLATLQRHSQPSHFLLSKPLFFPRFHASRKCNFRSLLSGNNRRRSAVRASADSPEVSESVVGADGGGLQPYSVKIPVGDRHILVETGSIGRQASGSVTVTDGETIVYTTVCLDDVPCEPSDFFPLSVIYQERFSAAGRTSGGFFKREGKIKDHEVLICRLIDRPLRPTMPKGFYHETQILSWVLSYDGLHSPDSLAITAAGIAVALSEVPMSKAVAGVRVGLVGDKYIVNPTTEEMEHSELDLLLAGTDSAILMIEGYSSFLPEEKLLKAVEVGQDAVRAICNEVEALVKKCGKPKMLDAIKLPPPELYEHVEAIAGDELVKVLQIRNKIPRRKALSSLEEKVLKILTENGFVSNDSTLRSNSETIAEILEVEDEDEEVIVDGEVDEGDVHIKPTPRKPALLFSEVDVKLVFKEITSKYWRKRIVEGGKRSDGRTPDGIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDTLDGVDEFKRFYLQYSFPPSCVGEAGRIGAPSRREIGHGMLAERSLAPILPSEDDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGIAMGMVLDTKEFGGDGTPLILSDITGSEDASGDMDFKVAGNGDGITAFQMDIKVGGITLPIMRKALLQARDGRKHILGAMMNSSPPPAKMLSKYAPLIHVMKVRPDRINLIIGSGGKKVKSIIEESGVDTIDTEDDGTVKIFAKDLPSLEKSKAIINSLTMVPTIGDIYSPFVRLLFVLSVKWEDGWKEDGVPLLEKYPRLYCISKQQQHYIQQMGLVSSGVWEWQLKWRRLLMEGEMDVAAHFLEDIDGMAVQVQHQDSGSWEGDPGGEYSVGSAYRALNEYAIEEDDERAFSILWKLKIPSKVSLFAWRLIRDRLPTRKNLRNRNVVLDEVCCPFCLNHNEDAGHLFFGCTKIMPLWWETLSWINTLSVFSERPKEHFLQHSQCFLNGFSEHRWQIWWISLAWCTWNHRNRIFFQVTALMVKN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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