Glyma.16g035800

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Report for Sequence Feature Glyma.16g035800

Feature Type:	gene_model
Chromosome:	Gm16
Start:	3385842
stop:	3389176
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.16g035800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G17840.1	AT	DnaJ/Hsp40 cysteine-rich domain superfamily protein	JGI	N/A	IEA
GO:0031072	GO-mf	heat shock protein binding	EnsemblGenomes	N/A	IEA
GO:0051082	GO-mf	unfolded protein binding	EnsemblGenomes	N/A	IEA

Expression Patterns of Glyma.16g035800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.16g035800

Paralog	Evidence	Comments
Glyma.19g117300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.16g035800 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma16g04010	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.16g035800

Limit To All Plant Sequences

>Glyma.16g035800.2 sequence-type=transcript locus=Glyma.16g035800 ID=Glyma.16g035800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGTGAATTGAAACGAGCGATTTGTACGAGGAAGTGGTGCTGTTGCATTGCGTGAACAAATTGAGGTGTGGTGTGCATGTTCAACATTGGGCACCGATGATGGGTTCAGCTACTGTGCAAATAGCGACGTCAAAATTTGTTCTTTGCCCGAATGCTTCAGCGGCGAAGGTTGCGAGTCCCAAGAAGAATGCCGTCATCAATTTCTCTTCCAACTTCAAAGGAAGTGTCACCAAAATCCATGCCATTCCCCCTAATGGCTCTGTCTCTATCTGCTCTTCGCGTGTGTCTGTGTCAAGTTTAAAGGCAGATGAGAACAAGCGCAGAAGTAATCTTGAATCCCTGTTTTGTTATGATAAGGCTATTCCAGAAGAAATAATTGAGAAACCTGTTGGGTTATCTTTGGAAGAGAAAGCTATTGGTAACAATACCCGATGCACTGATTGCCAGGCCAAAGGTGCTGTGCTTTGTGCCACTTGTGCTGGTTCTGGTCTATATGTTGACTCCATAATGGAAAGCCAGGGCATAATTGTTAAAGTTCGTTGCTTAGGGTCTGCTGCAGTTGGCTTTCTGCACCCTTTGCAGCTTTGATCCTACAGCTGCAGATTGCGGAATCATGTTTATAATGTTGCGGCGGAACAGGAAATATAATGTGTGCAGAATGTGGTGGACGAGGTCATCTGGGACCCAAATGATCAAGTCTGACTTTTTTGAAATTTGTTGTATTTGTACCTCCAGtatgtaatattttcgttgatattgattgtaaccatttttattattattattattatttttGTAAATCAAGGAGTCGTTATGACTGAAACCTAAGATATTTACCAAATTCTCTGCTATTCCTAATGCATGAGCTAAAGCTCACATAGCTGTCATATTTATTCTTAATTATTTCTCAAAGTATTTTCTTTGCTCACAGTGATGATAACCT

Coding sequences of Glyma.16g035800

Limit To All Plant Sequences

>Glyma.16g035800.1 sequence-type=CDS polypeptide=Glyma.16g035800.1.p locus=Glyma.16g035800 ID=Glyma.16g035800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGGGTTCAGCTACTGTGCAAATAGCGACGTCAAAATTTGTTCTTTGCCCGAATGCTTCAGCGGCGAAGGTTGCGAGTCCCAAGAAGAATGCCGTCATCAATTTCTCTTCCAACTTCAAAGGAAGTGTCACCAAAATCCATGCCATTCCCCCTAATGGCTCTGTCTCTATCTGCTCTTCGCGTGTGTCTGTGTCAAGTTTAAAGGCAGATGAGAACAAGCGCAGAAGTAATCTTGAATCCCTGTTTTGTTATGATAAGGCTATTCCAGAAGAAATAATTGAGAAACCTGTTGGGTTATCTTTGGAAGAGAAAGCTATTGGTAACAATACCCGATGCACTGATTGCCAGGCCAAAGGTGCTGTGCTTTGTGCCACTTGTGCTGGTTCTGGTCTATATGTTGACTCCATAATGGAAAGCCAGGGCATAATTGTTAAAGTTCGTTGCTTAGGTTGCGGCGGAACAGGAAATATAATGTGTGCAGAATGTGGTGGACGAGGTCATCTGGGACCCAAATGA

>Glyma.16g035800.2 sequence-type=CDS polypeptide=Glyma.16g035800.2.p locus=Glyma.16g035800 ID=Glyma.16g035800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGGGTTCAGCTACTGTGCAAATAGCGACGTCAAAATTTGTTCTTTGCCCGAATGCTTCAGCGGCGAAGGTTGCGAGTCCCAAGAAGAATGCCGTCATCAATTTCTCTTCCAACTTCAAAGGAAGTGTCACCAAAATCCATGCCATTCCCCCTAATGGCTCTGTCTCTATCTGCTCTTCGCGTGTGTCTGTGTCAAGTTTAAAGGCAGATGAGAACAAGCGCAGAAGTAATCTTGAATCCCTGTTTTGTTATGATAAGGCTATTCCAGAAGAAATAATTGAGAAACCTGTTGGGTTATCTTTGGAAGAGAAAGCTATTGGTAACAATACCCGATGCACTGATTGCCAGGCCAAAGGTGCTGTGCTTTGTGCCACTTGTGCTGGTTCTGGTCTATATGTTGACTCCATAATGGAAAGCCAGGGCATAATTGTTAAAGTTCGTTGCTTAGGGTCTGCTGCAGTTGGCTTTCTGCACCCTTTGCAGCTTTGA

Predicted protein sequences of Glyma.16g035800

Limit To All Plant Sequences

>Glyma.16g035800.1.p sequence-type=predicted peptide transcript=Glyma.16g035800.1 locus=Glyma.16g035800 ID=Glyma.16g035800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMGSATVQIATSKFVLCPNASAAKVASPKKNAVINFSSNFKGSVTKIHAIPPNGSVSICSSRVSVSSLKADENKRRSNLESLFCYDKAIPEEIIEKPVGLSLEEKAIGNNTRCTDCQAKGAVLCATCAGSGLYVDSIMESQGIIVKVRCLGCGGTGNIMCAECGGRGHLGPK*

>Glyma.16g035800.2.p sequence-type=predicted peptide transcript=Glyma.16g035800.2 locus=Glyma.16g035800 ID=Glyma.16g035800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMGSATVQIATSKFVLCPNASAAKVASPKKNAVINFSSNFKGSVTKIHAIPPNGSVSICSSRVSVSSLKADENKRRSNLESLFCYDKAIPEEIIEKPVGLSLEEKAIGNNTRCTDCQAKGAVLCATCAGSGLYVDSIMESQGIIVKVRCLGSAAVGFLHPLQL*

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