SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.16g035400

Feature Type:gene_model
Chromosome:Gm16
Start:3348514
stop:3362406
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.16g035400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G09360.1AT Cyclin/Brf1-like TBP-binding protein JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006359GO-bp regulation of transcription by RNA polymerase III EnsemblGenomesN/AIEA
GO:0006383GO-bp transcription by RNA polymerase III EnsemblGenomesN/AIEA
GO:0045893GO-bp positive regulation of transcription, DNA-templated JGI N/AIEA
GO:0070897GO-bp DNA-templated transcriptional preinitiation complex assembly EnsemblGenomesN/AIEA
GO:0000126GO-cc transcription factor TFIIIB complex EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0001026GO-mf TFIIIB-type transcription factor activity EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0017025GO-mf TBP-class protein binding EnsemblGenomesN/AIEA
GO:0017025GO-mf TBP-class protein binding JGI N/AIEA
KOG1598 KOG Transcription initiation factor TFIIIB, Brf1 subunit JGI N/AIEA
PTHR11618Panther TRANSCRIPTION INITIATION FACTOR IIB-RELATED JGI N/AIEA
PTHR11618:SF4Panther TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT JGI N/AIEA
PF00382PFAM Transcription factor TFIIB repeat JGI N/AIEA
PF07741PFAM Brf1-like TBP-binding domain JGI N/AIEA

Expression Patterns of Glyma.16g035400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.16g035400 not represented in the dataset
Glyma.16g035400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.16g035400
ParalogEvidenceComments
Glyma.19g117700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.16g035400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma16g03973 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.16g035400
>Glyma.16g035400.1 sequence-type=CDS polypeptide=Glyma.16g035400.1.p locus=Glyma.16g035400 ID=Glyma.16g035400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGTACTGCAGTCACTGTGCCAAAAATGTCGCTGGCGAGCGACTAGATGATGGTTTCTTATGTTGTGGAAGCTGTGGGAGGGTGTTGGAAGATTACTTTTTTGCCGAGGAGCCTTCATTTGTTAAGAATGCAGCGGGGCAGAGTAAATTATCAGGCAATTATGTAAGAACAGTTCAAAGTGAGTACTCTGAATCACGTCAAAGGACTTTAGATAGAGCTTATGATGAAATTAAATATTTAAGTTTCGGCCTTGGAGTTAATGATGAACATATGGCTGAACAAGCTTTGACCTTTTATAAAATAGCGCTTGAGCGAAATTTCACCCGTGGACGTAAATCAGAACAAGTACATGCTGCTTGTCTCTACATTGCATTCCGGCACAACAATAAACCATACCTTCTTATTGATTTTTCAAATTATTTAAGGACAGATGTTTATGTGCTAGGAGCAGTTTTCTTGCAGCTTTGTCAAGTGTTAAGGCTTGGAGAGCACCCAATTGTTCAAAAGCCTGTTGATCCAAGTCTTTTTATTCATAGATATACCAAGAATTTGTTAAAGCGAGGGAGTAAGGCTGTTTCGGATACTGCACTGGCCATTGTTGCAAGCATGAAACGTGACTGGATGCAGACAGGGAGGAAACCTAGCGGACTATGCGGTGCAGCATTATACATATCTGCTCTTGCTCATGGTATTAAGTGCTCTAAGCCGGATATTCTTAAAATTGTCCATGTATGTGAAGCAACATTAACCAAACGATTGGTAGAATTTGAGGATACAGAGTCTTCTAGCTTGACAGTTGAGGAGTTGAATACAATGGCAAAAGAGCATGAAAAAAATCCAACGATAATGCCAGAAGGTGGATTAAAAGGATGTATTTCAAAAGATCTACTGTGTGAGCACAAGGAGGATAGTGGGGTGACCCATTTTGCACTTGGATTATGTGAAGCATGCTATAAGGATTTTGATAAGCTCTCTGGTGGACTTGGTGGTGGTTTGGATCCTCCTGCGTTCCAGCGTGCTGAGAGGGAAAGACTTAAAAAAACACTTCCAGAGGAGAGTGTCGATGAAGCATGTGCTTTGGCGAATGCATCAAATGATCAGTTTAAGAGCCACAAAGAAGATTTGCCTGCCTATGTGCCAGAAAGTATTGGGGCTAATGTTGAGCATGAGGCCACTAAAGATGGTAAATATGATGATTCACATAGAGAAGATGAATCAGAAACTTTATCTGATATTGATGATGAAGAAGTTGATTTGTACATTCATGATGAGGAGGGGAAGCATATCAAGAAGATACTGTGGGAAACAGCAAATAGGGAGTATCTTGAGGAGCAGGCAGCCAAGGAAGCAGCTGCAGCAGCTAACAAGAAAGCTTTTGAGGCAAAATTTGAAAACTGTTCGGAGGATATACTAGCGGCAAGAGAGCTTGCTGCATCTTCTATTGAAGCTGTGGCAAAATCCAGAAAGGAAATGAGACAGAAACGAGCCTATGAGGCAAAAAATACAAGGCCAGCTCAATCTGCTGCAGAGGCCTTTGGCCAAATGTCTAATAAAAAAAGGAATTTGCAGGGTCTCAAATCTAAAGTCAATTTTGAACTCCTGAATGAATTGTTTGATGAAATGGATACGCAGGAAAATACCGATGGTCTCAAGAAACAGAAGAAAGTACGATTTGATTCGCCCCTAGATAAACATGACAATTTACCGTCCAAGATTGAGAACAAAAATGAAGATGAGATGGGATCAGTGGATGAATTCGAAGATGAAGGTGATATGGGGGAGATGTATCAAAATACTGAAAATATGGCTGATAAATATTTCCCTGAGGATGACGGTTTCAGCTATAATGACTATAATGATTATTACTGA
Predicted protein sequences of Glyma.16g035400
>Glyma.16g035400.1.p sequence-type=predicted peptide transcript=Glyma.16g035400.1 locus=Glyma.16g035400 ID=Glyma.16g035400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVYCSHCAKNVAGERLDDGFLCCGSCGRVLEDYFFAEEPSFVKNAAGQSKLSGNYVRTVQSEYSESRQRTLDRAYDEIKYLSFGLGVNDEHMAEQALTFYKIALERNFTRGRKSEQVHAACLYIAFRHNNKPYLLIDFSNYLRTDVYVLGAVFLQLCQVLRLGEHPIVQKPVDPSLFIHRYTKNLLKRGSKAVSDTALAIVASMKRDWMQTGRKPSGLCGAALYISALAHGIKCSKPDILKIVHVCEATLTKRLVEFEDTESSSLTVEELNTMAKEHEKNPTIMPEGGLKGCISKDLLCEHKEDSGVTHFALGLCEACYKDFDKLSGGLGGGLDPPAFQRAERERLKKTLPEESVDEACALANASNDQFKSHKEDLPAYVPESIGANVEHEATKDGKYDDSHREDESETLSDIDDEEVDLYIHDEEGKHIKKILWETANREYLEEQAAKEAAAAANKKAFEAKFENCSEDILAARELAASSIEAVAKSRKEMRQKRAYEAKNTRPAQSAAEAFGQMSNKKRNLQGLKSKVNFELLNELFDEMDTQENTDGLKKQKKVRFDSPLDKHDNLPSKIENKNEDEMGSVDEFEDEGDMGEMYQNTENMADKYFPEDDGFSYNDYNDYY*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo