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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G25530.1 | AT | glyoxylate reductase 1 | JGI | N/A | IEA |
| GO:0006098 | GO-bp | pentose-phosphate shunt | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0004616 | GO-mf | phosphogluconate dehydrogenase (decarboxylating) activity | EnsemblGenomes | N/A | IEA |
| GO:0004616 | GO-mf | phosphogluconate dehydrogenase (decarboxylating) activity | JGI | N/A | IEA |
| GO:0008677 | GO-mf | 2-dehydropantoate 2-reductase activity | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0050661 | GO-mf | NADP binding | EnsemblGenomes | N/A | IEA |
| GO:0051287 | GO-mf | NAD binding | EnsemblGenomes | N/A | IEA |
| KOG0409 | KOG | Predicted dehydrogenase | JGI | N/A | IEA |
| PTHR22981 | Panther | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-RELATED | JGI | N/A | IEA |
| PTHR22981:SF13 | Panther | JGI | N/A | IEA | |
| PF03446 | PFAM | NAD binding domain of 6-phosphogluconate dehydrogenase | JGI | N/A | IEA |
| PWY-4321 | SoyCyc9 | L-glutamate degradation IV | Plant Metabolic Network | ISS | |
| PWY-6473 | SoyCyc9 | 4-aminobutanoate degradation IV | Plant Metabolic Network | ISS | |
| PWY-6535 | SoyCyc9 | 4-aminobutanoate degradation I | Plant Metabolic Network | ISS | |
| GN7V-44690 | SoyCyc9-rxn | succinate-semialdehyde dehydrogenase (NAD+) | Plant Metabolic Network | ISS |
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Glyma.16g028700 not represented in the dataset |
Glyma.16g028700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.07g059800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma16g03160 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.16g028700.1 sequence-type=CDS polypeptide=Glyma.16g028700.1.p locus=Glyma.16g028700 ID=Glyma.16g028700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAGGTTGGATTTTTGGGTTTGGGGATAATGGGCAAGGCTATGGCAATCAATCTTCTACGCCATGGCTTCAAAGTCACTGTTTGGAACAGAACCCTCTCCAAGTGTGACGAACTCGTGCAACATGGTGCTTCAGTTGGAGAAACCCCAGCAACTGTAGTCAAGAAATGCAAGTATACAATTGCAATGTTATCTGATCCTTCGGCTGCTTTATCGGTTGTGTTTGATAATGATGGTGTTCTTGAGCATATTAATGGAAAAGGTTATATTGACATGTCAACAGTTAATGCTGATACATCTTCCAAAATATCTGAGGCTATCAAAGCAAAAGGTGGTTACTTCCTTGAAGGTCCTGTTTCGGGTAGCAAGAAGCCTGCAGAAGATGGCCAACTCATAATACTTGCTGCTGGACATAAGGCATTGTATGATGAAGTGCTTCCAGCATTTGATATACTGGGGAAGAAGTCTTTCTTTCTGGGTGAGGTTGGAAATGGTGCAAAAATGAAACTAGTTGTTAACATGATAATGGGCAGTATGATGAATGCTTTCTCTGAGGGAATCACACTAGCTGAAAGAAGTGGTTTGAACCCTGGTACTCTTCTTGATGTGCTGGATCTTGGTGCCATAAGTAACGGCATGTTTAAATTGAAAGGACCTACAATGCTCCAAAACAGTTATTCCCCAGCTTTTCCGCTGAAACACCAGCAGAAGGACATGAGATTAGCTCTTGCCCTTGGAGATGAAAATGCTGTATCAATGCCAGTAGCAGCTGCAGCAAACGAGGCTTTCAAGAAAGCCAGAAGCATGGGGTTGGGAGACCTTGATTTTTCAGCAGTTCATGAGACTTTGAAAGCTCCTGATCATTCATCTTGA
>Glyma.16g028700.1.p sequence-type=predicted peptide transcript=Glyma.16g028700.1 locus=Glyma.16g028700 ID=Glyma.16g028700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEVGFLGLGIMGKAMAINLLRHGFKVTVWNRTLSKCDELVQHGASVGETPATVVKKCKYTIAMLSDPSAALSVVFDNDGVLEHINGKGYIDMSTVNADTSSKISEAIKAKGGYFLEGPVSGSKKPAEDGQLIILAAGHKALYDEVLPAFDILGKKSFFLGEVGNGAKMKLVVNMIMGSMMNAFSEGITLAERSGLNPGTLLDVLDLGAISNGMFKLKGPTMLQNSYSPAFPLKHQQKDMRLALALGDENAVSMPVAAAANEAFKKARSMGLGDLDFSAVHETLKAPDHSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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